Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0001789

Physical Location & Seq

Genomic Coordinates Reverse (-)

46053188 .. 46056373

Gene Structure 3186 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG367800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGGATAGTCTCAGGCGTGCTGAAGATATTGTTTCACAATCTATTGGTTGTCAGATTCAAGAGGTTCTTAGTGAACTTGAGTGTACCGTCTTCGCACTTGATCCCTCAGAGAAGCCAGTTGGTGATGACATAATTGCTCTGCTCCAGCAAGGAAGAAAATTTGACAACTGCAGTGACATTAACGAGCCAGAATCTTTTCATCAGGCTGCTATCAAGGTTGGTATTGCGTCTTCTACGGCAGCTCTTGGAGAGAGAAGAGCTCTAAAGAAACTCATCCAAAGAGCCCCTGCTGAGGAAGATAAGCGTAAGGAGTCAATCTCAATCGTGGCTTATCTATTGCATCCTATGAGAAAGGGAGGACTTAAGGAAGAAGTGCATGTGGTGGAGCAAATAAGGCTCCTGCTGAAGGATGATGAGGAGGCCAGGATGTACATGGGGGCTAATGGGTTTGTTGAAGCACTTCTACGCTTTCTTAACTCAGCTGTGCGTGAAGCAAATGTTTTGGCTCAAGAAAGTGGAGCTATGGCTCTATTCAATCTTGCTGTGAATAATAACAGAAATAAGGAGACAATATGCTTGCGTCAGGGTATCATCAGTGGTTTGCAATCCCTTCTTGCAGACTCCGGTGAACATTCATGGACAGAAAAATGTATAGCTGTTTTGATAAATTTGGCTTCAAGTAATTCTGCAAAAGATGAAATGATTTCAAATACGAAGCTTATCAGTGCATTAGCAGCACTTCTGGAGTCTGAACAACCCATTGAGCAGGAGCAAGTTGTCTCATGTCTCTTTATGTTGTGTAATGGGAATGAGAAATGCAGTCAGATAGTCCTGCGGGAAGGGGTAATTCCTGCATTGGTGTTGATGTCCGTTAATGGAACATCAAGAGGAAAAGAGAAAGCTCAGAAGCTGTTAATGCTGTTTTGTGAGCAGAGAGACAAAAGAGACCAATCACCTCCGGAGGAGAAGGTACAACTCTGCGAACAAAATGACAACAATCCCATACCCGCTCCAGAATCAAAGCCTATGCAAATCCATCTCAAGAAGAAAGATGGGCAAAGCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0033612 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0070647 GO:0070696 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KAP U-box

Protein Analysis

355

Amino Acids

39.27

Weight (kDa)

5.33

Isoelectric Point (pI)

51.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARM_PUB	PF25598	88 - 310	4.2e-13	Plant U-box protein ARM repeat region
ARM_ARMC5	PF24768	147 - 310	5.9e-07	ARMC5

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001789)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24330 AT1G24330 AT1G27910 AT1G67530 AT1G67530 AT1G67530 AT1G67530
fragaria_vesca	FvH4_4g24030 FvH4_4g24030 FvH4_4g24030
malus_domestica	MD16G1116600.v1.1
prunus_persica	Prupe.1G229500_v2.0.a1 Prupe.1G229500_v2.0.a1 Prupe.1G229500_v2.0.a1 Prupe.1G229500_v2.0.a1 Prupe.1G229500_v2.0.a1
pyrus_communis	pycom13g10100 pycom16g09990
rosa_chinensis	RchiOBHm_Chr4g0430741 RchiOBHm_Chr7g0222371 RchiOBHm_Chr7g0222381
rosa_laevigata	RLG00000002065 RLG00000002066 RLG00000006953
rosa_multiflora	Rmu_co8254499.1_g000001 Rmu_sc0008769.1_g000015 Rmu_sc0030350.1_g000001 Rmu_sc0034402.1_g000003
rosa_roxburghii	Rroxscaffold_3G00237030 Rroxscaffold_5G00372450
rosa_rugosa	Rorug04G0245300 Rorug04G0245300 Rorug04G0245400 Rorug04G0245500 Rorug07G0207800
rosa_samantha	Rh4AG301500 Rh4BG309400 Rh4CG326100 Rh4DG306400 Rh7AG350300 Rh7BG340600 Rh7BG340700 Rh7CG367800 Rh7DG346500 Rh7DG346600
rosa_wichuraiana	Rw4G026200 Rw7G029570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	1010
AccIII	TCCGGA	1 cut(s)	958
AciI	CCGC	2 cut(s)	835, 1008
AclWI	GGATC	1 cut(s)	95
AcsI	RAATTY	2 cut(s)	158, 667
AcuI	CTGAAG	2 cut(s)	42, 425
AfaI	GTAC	3 cut(s)	85, 431, 972
AfiI	CCNNNNNNNGG	2 cut(s)	292, 406
AflII	CTTAAG	1 cut(s)	362
AgsI	TTSAA	5 cut(s)	59, 455, 535, 678, 708
AjnI	CCWGG	1 cut(s)	422
AluBI	AGCT	9 cut(s)	242, 260, 482, 521, 656, 718, 902, 910, 1062
AluI	AGCT	9 cut(s)	242, 260, 482, 521, 656, 718, 902, 910, 1062
Alw21I	GWGCWC	1 cut(s)	262
Alw26I	GTCTC	6 cut(s)	14, 560, 784, 791, 930, 939
AlwI	GGATC	1 cut(s)	95
AlwNI	CAGNNNCTG	1 cut(s)	910
Aor13HI	TCCGGA	1 cut(s)	958
AoxI	GGCC	1 cut(s)	420
ApeKI	GCWGC	3 cut(s)	206, 239, 734
ApoI	RAATTY	2 cut(s)	158, 667
Asp700I	GAANNNNTTC	2 cut(s)	195, 459
AsuHPI	GGTGA	3 cut(s)	134, 638, 945
BanII	GRGCYC	2 cut(s)	262, 286
BarI	GAAGNNNNNNTAC	4 cut(s)	214, 246, 447, 479
BbsI	GAAGAC	2 cut(s)	82, 222
Bbv12I	GWGCWC	1 cut(s)	262
BbvCI	CCTCAGC	1 cut(s)	291
BbvI	GCAGC	3 cut(s)	193, 251, 746
BccI	CCATC	2 cut(s)	1044, 1046
BceAI	ACGGC	1 cut(s)	252
BciT130I	CCWGG	1 cut(s)	424
BcoDI	GTCTC	6 cut(s)	14, 560, 784, 791, 930, 939
BfmI	CTRYAG	1 cut(s)	169
BfrI	CTTAAG	1 cut(s)	362
BisI	GCNGC	3 cut(s)	207, 240, 735
BlsI	GCNGC	3 cut(s)	208, 241, 736
Bme1390I	CCNGG	1 cut(s)	424
BmiI	GGNNCC	1 cut(s)	398
BmrFI	CCNGG	1 cut(s)	424
BmsI	GCATC	1 cut(s)	349
BpiI	GAAGAC	2 cut(s)	82, 222
BplI	GAGNNNNNCTC	4 cut(s)	244, 276, 302, 334
BpmI	CTGGAG	3 cut(s)	128, 764, 996
Bpu10I	CCTNAGC	1 cut(s)	291
BpuEI	CTTGAG	3 cut(s)	98, 492, 1025
BsaI	GGTCTC	1 cut(s)	939
BsaWI	WCCGGW	2 cut(s)	623, 958
Bsc4I	CCNNNNNNNGG	2 cut(s)	292, 406
Bse1I	ACTGG	1 cut(s)	116
BseAI	TCCGGA	1 cut(s)	958
BseBI	CCWGG	1 cut(s)	424
BseGI	GGATG	4 cut(s)	273, 340, 415, 432
BseLI	CCNNNNNNNGG	2 cut(s)	292, 406
BseMII	CTCAG	5 cut(s)	25, 120, 282, 492, 917
BseNI	ACTGG	1 cut(s)	116
BseRI	GAGGAG	2 cut(s)	431, 977
BseXI	GCAGC	3 cut(s)	193, 251, 746
BshFI	GGCC	1 cut(s)	422
BsiHKAI	GWGCWC	1 cut(s)	262
BsiSI	CCGG	2 cut(s)	624, 959
BslI	CCNNNNNNNGG	2 cut(s)	292, 406
BsmAI	GTCTC	6 cut(s)	14, 560, 784, 791, 930, 939
BsnI	GGCC	1 cut(s)	422
Bso31I	GGTCTC	1 cut(s)	939
Bsp1286I	GDGCHC	2 cut(s)	262, 286
Bsp13I	TCCGGA	1 cut(s)	958
Bsp1407I	TGTACA	1 cut(s)	429
Bsp143I	GATC	1 cut(s)	100
BspACI	CCGC	2 cut(s)	835, 1008
BspANI	GGCC	1 cut(s)	422
BspCNI	CTCAG	5 cut(s)	24, 119, 283, 491, 916
BspEI	TCCGGA	1 cut(s)	958
BspLI	GGNNCC	1 cut(s)	398
BspMAI	CTGCAG	1 cut(s)	173
BspPI	GGATC	1 cut(s)	95
BspQI	GCTCTTC	1 cut(s)	250
BspTI	CTTAAG	1 cut(s)	362
BspTNI	GGTCTC	1 cut(s)	939
BsrBI	CCGCTC	1 cut(s)	1010
BsrGI	TGTACA	1 cut(s)	429
BsrI	ACTGG	1 cut(s)	116
BssMI	GATC	1 cut(s)	100
Bst2UI	CCWGG	1 cut(s)	424
Bst4CI	ACNGT	1 cut(s)	88
Bst6I	CTCTTC	1 cut(s)	250
BstAFI	CTTAAG	1 cut(s)	362
BstAUI	TGTACA	1 cut(s)	429
BstC8I	GCNNGC	2 cut(s)	18, 578
BstDEI	CTNAG	6 cut(s)	11, 68, 106, 291, 478, 903
BstENI	CCTNNNNNAGG	1 cut(s)	404
BstF5I	GGATG	4 cut(s)	273, 340, 415, 432
BstKTI	GATC	1 cut(s)	103
BstMAI	GTCTC	6 cut(s)	14, 560, 784, 791, 930, 939
BstMBI	GATC	1 cut(s)	100
BstMWI	GCNNNNNNNGC	3 cut(s)	394, 734, 916
BstNI	CCWGG	1 cut(s)	424
BstNSI	RCATGY	1 cut(s)	380
BstSCI	CCNGG	1 cut(s)	422
BstSFI	CTRYAG	1 cut(s)	169
BstV1I	GCAGC	3 cut(s)	193, 251, 746
BstV2I	GAAGAC	2 cut(s)	82, 222
BsuRI	GGCC	1 cut(s)	422
BtsCI	GGATG	4 cut(s)	273, 340, 415, 432
BtsI	GCAGTG	1 cut(s)	178
BtsIMutI	CAGTG	3 cut(s)	178, 601, 730
Cac8I	GCNNGC	2 cut(s)	18, 578
CaiI	CAGNNNCTG	1 cut(s)	910
CseI	GACGC	2 cut(s)	216, 569
Csp6I	GTAC	3 cut(s)	84, 430, 971
CviAII	CATG	4 cut(s)	377, 433, 636, 783
CviQI	GTAC	3 cut(s)	84, 430, 971
DdeI	CTNAG	6 cut(s)	11, 68, 106, 291, 478, 903
DpnI	GATC	1 cut(s)	102
DpnII	GATC	1 cut(s)	100
Eam1104I	CTCTTC	1 cut(s)	250
EarI	CTCTTC	1 cut(s)	250
Ecl136II	GAGCTC	1 cut(s)	260
Eco24I	GRGCYC	2 cut(s)	262, 286
Eco31I	GGTCTC	1 cut(s)	939
Eco53kI	GAGCTC	1 cut(s)	260
Eco57I	CTGAAG	2 cut(s)	42, 425
EcoICRI	GAGCTC	1 cut(s)	260
EcoNI	CCTNNNNNAGG	1 cut(s)	404
EcoRII	CCWGG	1 cut(s)	422
EcoT38I	GRGCYC	2 cut(s)	262, 286
FaeI	CATG	4 cut(s)	380, 436, 639, 786
FalI	AAGNNNNNCTT	2 cut(s)	51, 83
FatI	CATG	4 cut(s)	376, 432, 635, 782
FauI	CCCGC	2 cut(s)	828, 1015
Fnu4HI	GCNGC	3 cut(s)	207, 240, 735
FokI	GGATG	4 cut(s)	260, 327, 422, 439
FriOI	GRGCYC	2 cut(s)	262, 286
Fsp4HI	GCNGC	3 cut(s)	207, 240, 735
GluI	GCNGC	3 cut(s)	207, 240, 735
GsuI	CTGGAG	3 cut(s)	128, 764, 996
HaeIII	GGCC	1 cut(s)	422
HapII	CCGG	2 cut(s)	624, 959
HgaI	GACGC	2 cut(s)	216, 569
Hin1II	CATG	4 cut(s)	380, 436, 639, 786
HindIII	AAGCTT	2 cut(s)	716, 1060
HinfI	GANTC	6 cut(s)	55, 191, 311, 620, 746, 1016
HpaII	CCGG	2 cut(s)	624, 959
HphI	GGTGA	3 cut(s)	134, 638, 945
Hpy166II	GTNNAC	3 cut(s)	74, 84, 629
Hpy188I	TCNGA	5 cut(s)	54, 109, 751, 825, 906
Hpy188III	TCNNGA	7 cut(s)	59, 509, 743, 885, 959, 1013, 1042
Hpy8I	GTNNAC	3 cut(s)	74, 84, 629
HpyAV	CCTTC	4 cut(s)	400, 620, 833, 961
HpyCH4III	ACNGT	1 cut(s)	88
HpyF10VI	GCNNNNNNNGC	3 cut(s)	394, 734, 916
HpyF3I	CTNAG	6 cut(s)	11, 68, 106, 291, 478, 903
Hsp92II	CATG	4 cut(s)	380, 436, 639, 786
Kpn2I	TCCGGA	1 cut(s)	958
Kzo9I	GATC	1 cut(s)	100
LguI	GCTCTTC	1 cut(s)	250
LmnI	GCTCC	6 cut(s)	147, 385, 402, 518, 769, 1015
Lsp1109I	GCAGC	3 cut(s)	193, 251, 746
LweI	GCATC	1 cut(s)	349
MaeIII	GTNAC	1 cut(s)	173
MalI	GATC	1 cut(s)	102
MbiI	CCGCTC	1 cut(s)	1010
MboI	GATC	1 cut(s)	100
MboII	GAAGA	8 cut(s)	35, 82, 165, 222, 267, 308, 380, 1057
MhlI	GDGCHC	2 cut(s)	262, 286
MluCI	AATT	5 cut(s)	132, 158, 667, 682, 846
MlyI	GAGTC	3 cut(s)	320, 614, 755
MnlI	CCTC	9 cut(s)	55, 115, 286, 350, 409, 412, 881, 955, 966
MroI	TCCGGA	1 cut(s)	958
MroXI	GAANNNNTTC	2 cut(s)	195, 459
MseI	TTAA	5 cut(s)	180, 363, 474, 873, 914
MspA1I	CMGCKG	1 cut(s)	482
MspCI	CTTAAG	1 cut(s)	362
MspI	CCGG	2 cut(s)	624, 959
MspR9I	CCNGG	1 cut(s)	424
MvaI	CCWGG	1 cut(s)	424
MwoI	GCNNNNNNNGC	3 cut(s)	394, 734, 916
NdeII	GATC	1 cut(s)	100
NlaIII	CATG	4 cut(s)	380, 436, 639, 786
NlaIV	GGNNCC	1 cut(s)	398
NmuCI	GTSAC	1 cut(s)	173
NspI	RCATGY	1 cut(s)	380
PciSI	GCTCTTC	1 cut(s)	250
PdmI	GAANNNNTTC	2 cut(s)	195, 459
PfeI	GAWTC	3 cut(s)	55, 191, 1016
PkrI	GCNGC	3 cut(s)	208, 241, 736
PleI	GAGTC	3 cut(s)	319, 614, 754
PpsI	GAGTC	3 cut(s)	319, 614, 754
Psp124BI	GAGCTC	1 cut(s)	262
Psp6I	CCWGG	1 cut(s)	422
PspGI	CCWGG	1 cut(s)	422
PspN4I	GGNNCC	1 cut(s)	398
PstI	CTGCAG	1 cut(s)	173
PstNI	CAGNNNCTG	1 cut(s)	910
PvuII	CAGCTG	1 cut(s)	482
RsaI	GTAC	3 cut(s)	85, 431, 972
RsaNI	GTAC	3 cut(s)	84, 430, 971
SacI	GAGCTC	1 cut(s)	262
SapI	GCTCTTC	1 cut(s)	250
SaqAI	TTAA	5 cut(s)	180, 363, 474, 873, 914
SatI	GCNGC	3 cut(s)	207, 240, 735
Sau3AI	GATC	1 cut(s)	100
SchI	GAGTC	3 cut(s)	320, 614, 755
ScrFI	CCNGG	1 cut(s)	424
SduI	GDGCHC	2 cut(s)	262, 286
SfaNI	GCATC	1 cut(s)	349
SfcI	CTRYAG	1 cut(s)	169
SmlI	CTYRAG	4 cut(s)	77, 362, 507, 1040
SmoI	CTYRAG	4 cut(s)	77, 362, 507, 1040
Sse9I	AATT	5 cut(s)	132, 158, 667, 682, 846
SsiI	CCGC	2 cut(s)	835, 1008
SstI	GAGCTC	1 cut(s)	262
StyD4I	CCNGG	1 cut(s)	422
TaaI	ACNGT	1 cut(s)	88
TasI	AATT	5 cut(s)	132, 158, 667, 682, 846
TatI	WGTACW	1 cut(s)	429
TfiI	GAWTC	3 cut(s)	55, 191, 1016
Tru1I	TTAA	5 cut(s)	180, 363, 474, 873, 914
Tru9I	TTAA	5 cut(s)	180, 363, 474, 873, 914
TscAI	CASTG	3 cut(s)	178, 601, 730
TseFI	GTSAC	1 cut(s)	173
TseI	GCWGC	3 cut(s)	206, 239, 734
Tsp45I	GTSAC	1 cut(s)	173
TspDTI	ATGAA	3 cut(s)	188, 624, 711
TspGWI	ACGGA	1 cut(s)	859
TspRI	CASTG	3 cut(s)	178, 601, 730
Vha464I	CTTAAG	1 cut(s)	362
XagI	CCTNNNNNAGG	1 cut(s)	404
XapI	RAATTY	2 cut(s)	158, 667
XceI	RCATGY	1 cut(s)	380
XcmI	CCANNNNNNNNNTGG	1 cut(s)	430
XmnI	GAANNNNTTC	2 cut(s)	195, 459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.