Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001789

Physical Location & Seq

Genomic Coordinates Reverse (-)

45907821 .. 45908315

Gene Structure 495 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG346600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGTATGACCCGGTCATCATTGCTTCTGGTCAAACATATGAAAGGATTTGCATTGAAAAGTGGTTTAGCGATGGGCATAGTACCTGCCCAAAGACTCAACAAAAGCTGAGTCATCTTTCTTTAACTCCAAATTACTGTGTCAAGGGTCTCATTTCTAGTTGGTGCGAACAGAATGGAATTTCCATTCCCGATGGCCCCCCAGAGTTTCTTGACCTTAACTATTGGAAGCTGGCATTTTCTGAGTCTGAGTCCGCTAATTCAAAATCTATGGGTAGTGTTGGCTCTTGCAACTTGAAGGGTGCTAAAGTGATTCCTATAGAGGAGAGTTGTACAATAGAGGAGGCTGTCGGAAATGAAACAGAAGAGCTTTCTCCGGCATCAGAAGAGTCTGAGCCTGATGCTTTTGAGAGTTATCAGGATCTTTTAACTGCCTTGAATGAAGGGGAGGACTTAAGGAAGAAGTGCAGAGCAAATAAGGCTCCTGCTGAAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0033612 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0070647 GO:0070696 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KAP U-box

Protein Analysis

164

Amino Acids

17.99

Weight (kDa)

4.52

Isoelectric Point (pI)

56.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
U-box	PF04564	1 - 58	1.3e-13	U-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001789)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24330 AT1G24330 AT1G27910 AT1G67530 AT1G67530 AT1G67530 AT1G67530
fragaria_vesca	FvH4_4g24030 FvH4_4g24030 FvH4_4g24030
malus_domestica	MD16G1116600.v1.1
prunus_persica	Prupe.1G229500_v2.0.a1 Prupe.1G229500_v2.0.a1 Prupe.1G229500_v2.0.a1 Prupe.1G229500_v2.0.a1 Prupe.1G229500_v2.0.a1
pyrus_communis	pycom13g10100 pycom16g09990
rosa_chinensis	RchiOBHm_Chr4g0430741 RchiOBHm_Chr7g0222371 RchiOBHm_Chr7g0222381
rosa_laevigata	RLG00000002065 RLG00000002066 RLG00000006953
rosa_multiflora	Rmu_co8254499.1_g000001 Rmu_sc0008769.1_g000015 Rmu_sc0030350.1_g000001 Rmu_sc0034402.1_g000003
rosa_roxburghii	Rroxscaffold_3G00237030 Rroxscaffold_5G00372450
rosa_rugosa	Rorug04G0245300 Rorug04G0245300 Rorug04G0245400 Rorug04G0245500 Rorug07G0207800
rosa_samantha	Rh4AG301500 Rh4BG309400 Rh4CG326100 Rh4DG306400 Rh7AG350300 Rh7BG340600 Rh7BG340700 Rh7CG367800 Rh7DG346500 Rh7DG346600
rosa_wichuraiana	Rw4G026200 Rw7G029570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	92
AciI	CCGC	1 cut(s)	252
AclWI	GGATC	1 cut(s)	426
AcsI	RAATTY	1 cut(s)	177
AfaI	GTAC	2 cut(s)	82, 331
AfiI	CCNNNNNNNGG	1 cut(s)	488
AflII	CTTAAG	1 cut(s)	451
AgsI	TTSAA	4 cut(s)	56, 261, 295, 436
AluBI	AGCT	3 cut(s)	106, 229, 367
AluI	AGCT	3 cut(s)	106, 229, 367
Alw26I	GTCTC	1 cut(s)	152
AlwI	GGATC	1 cut(s)	426
AoxI	GGCC	1 cut(s)	193
ApoI	RAATTY	1 cut(s)	177
ArsI	GACNNNNNNTTYG	2 cut(s)	94, 126
AspS9I	GGNCC	1 cut(s)	194
AsuC2I	CCSGG	1 cut(s)	11
BccI	CCATC	2 cut(s)	65, 185
BcnI	CCSGG	1 cut(s)	11
BcoDI	GTCTC	1 cut(s)	152
BfaI	CTAG	1 cut(s)	156
BfmI	CTRYAG	1 cut(s)	315
BfrI	CTTAAG	1 cut(s)	451
BfuAI	ACCTGC	1 cut(s)	92
Bme1390I	CCNGG	1 cut(s)	11
BmgT120I	GGNCC	1 cut(s)	194
BmiI	GGNNCC	2 cut(s)	196, 480
BmrFI	CCNGG	1 cut(s)	11
BmsI	GCATC	2 cut(s)	386, 388
BpuMI	CCSGG	1 cut(s)	11
BsaI	GGTCTC	1 cut(s)	152
Bsc4I	CCNNNNNNNGG	1 cut(s)	488
Bse3DI	GCAATG	1 cut(s)	18
BseLI	CCNNNNNNNGG	1 cut(s)	488
BseMI	GCAATG	1 cut(s)	18
BseMII	CTCAG	4 cut(s)	98, 231, 237, 381
BseRI	GAGGAG	2 cut(s)	335, 353
BsgI	GTGCAG	1 cut(s)	484
BshFI	GGCC	1 cut(s)	195
BsiSI	CCGG	2 cut(s)	11, 374
BslI	CCNNNNNNNGG	1 cut(s)	488
BsmAI	GTCTC	1 cut(s)	152
BsnI	GGCC	1 cut(s)	195
Bso31I	GGTCTC	1 cut(s)	152
Bsp1407I	TGTACA	1 cut(s)	329
Bsp143I	GATC	1 cut(s)	418
BspACI	CCGC	1 cut(s)	252
BspANI	GGCC	1 cut(s)	195
BspCNI	CTCAG	4 cut(s)	99, 232, 238, 382
BspLI	GGNNCC	2 cut(s)	196, 480
BspMI	ACCTGC	1 cut(s)	92
BspPI	GGATC	1 cut(s)	426
BspQI	GCTCTTC	1 cut(s)	357
BspTI	CTTAAG	1 cut(s)	451
BspTNI	GGTCTC	1 cut(s)	152
BsrDI	GCAATG	1 cut(s)	18
BsrGI	TGTACA	1 cut(s)	329
BssMI	GATC	1 cut(s)	418
Bst4CI	ACNGT	1 cut(s)	137
Bst6I	CTCTTC	2 cut(s)	357, 378
BstAFI	CTTAAG	1 cut(s)	451
BstAUI	TGTACA	1 cut(s)	329
BstC8I	GCNNGC	1 cut(s)	231
BstDEI	CTNAG	4 cut(s)	107, 240, 246, 390
BstENI	CCTNNNNNAGG	1 cut(s)	486
BstKTI	GATC	1 cut(s)	421
BstMAI	GTCTC	1 cut(s)	152
BstMBI	GATC	1 cut(s)	418
BstMWI	GCNNNNNNNGC	1 cut(s)	476
BstSCI	CCNGG	1 cut(s)	9
BstSFI	CTRYAG	1 cut(s)	315
BstX2I	RGATCY	1 cut(s)	418
BstYI	RGATCY	1 cut(s)	418
BsuRI	GGCC	1 cut(s)	195
BtgZI	GCGATG	1 cut(s)	84
BveI	ACCTGC	1 cut(s)	92
Cac8I	GCNNGC	1 cut(s)	231
Cfr13I	GGNCC	1 cut(s)	194
Csp6I	GTAC	2 cut(s)	81, 330
CviJI	RGCY	8 cut(s)	106, 195, 229, 282, 344, 367, 394, 479
CviKI_1	RGCY	8 cut(s)	106, 195, 229, 282, 344, 367, 394, 479
CviQI	GTAC	2 cut(s)	81, 330
DdeI	CTNAG	4 cut(s)	107, 240, 246, 390
DpnI	GATC	1 cut(s)	420
DpnII	GATC	1 cut(s)	418
Eam1104I	CTCTTC	2 cut(s)	357, 378
EarI	CTCTTC	2 cut(s)	357, 378
Eco31I	GGTCTC	1 cut(s)	152
EcoNI	CCTNNNNNAGG	1 cut(s)	486
FaiI	YATR	6 cut(s)	6, 37, 39, 78, 269, 317
FauNDI	CATATG	1 cut(s)	37
FspBI	CTAG	1 cut(s)	156
HaeIII	GGCC	1 cut(s)	195
HapII	CCGG	2 cut(s)	11, 374
HinfI	GANTC	6 cut(s)	94, 109, 242, 248, 310, 386
HpaII	CCGG	2 cut(s)	11, 374
Hpy188I	TCNGA	5 cut(s)	241, 247, 350, 382, 391
Hpy188III	TCNNGA	3 cut(s)	188, 209, 416
HpyAV	CCTTC	3 cut(s)	289, 434, 482
HpyCH4III	ACNGT	1 cut(s)	137
HpyCH4V	TGCA	3 cut(s)	51, 288, 465
HpyF10VI	GCNNNNNNNGC	1 cut(s)	476
HpyF3I	CTNAG	4 cut(s)	107, 240, 246, 390
Kzo9I	GATC	1 cut(s)	418
LguI	GCTCTTC	1 cut(s)	357
LmnI	GCTCC	1 cut(s)	484
LpnPI	CCDG	8 cut(s)	12, 24, 97, 213, 215, 387, 401, 408
LweI	GCATC	2 cut(s)	386, 388
MaeI	CTAG	1 cut(s)	156
MalI	GATC	1 cut(s)	420
MboI	GATC	1 cut(s)	418
MboII	GAAGA	3 cut(s)	374, 395, 469
MflI	RGATCY	1 cut(s)	418
MluCI	AATT	3 cut(s)	130, 177, 256
MlyI	GAGTC	5 cut(s)	88, 118, 251, 257, 395
MmeI	TCCRAC	1 cut(s)	328
MnlI	CCTC	4 cut(s)	313, 331, 334, 439
MseI	TTAA	4 cut(s)	122, 216, 425, 452
MspCI	CTTAAG	1 cut(s)	451
MspI	CCGG	2 cut(s)	11, 374
MspR9I	CCNGG	1 cut(s)	11
MwoI	GCNNNNNNNGC	1 cut(s)	476
NciI	CCSGG	1 cut(s)	11
NdeI	CATATG	1 cut(s)	37
NdeII	GATC	1 cut(s)	418
NlaIV	GGNNCC	2 cut(s)	196, 480
PciSI	GCTCTTC	1 cut(s)	357
PfeI	GAWTC	1 cut(s)	310
PflFI	GACNNNGTC	1 cut(s)	11
PleI	GAGTC	5 cut(s)	88, 117, 250, 256, 394
PpsI	GAGTC	5 cut(s)	88, 117, 250, 256, 394
PspN4I	GGNNCC	2 cut(s)	196, 480
PspPI	GGNCC	1 cut(s)	194
PsuI	RGATCY	1 cut(s)	418
PsyI	GACNNNGTC	1 cut(s)	11
RsaI	GTAC	2 cut(s)	82, 331
RsaNI	GTAC	2 cut(s)	81, 330
SapI	GCTCTTC	1 cut(s)	357
SaqAI	TTAA	4 cut(s)	122, 216, 425, 452
Sau3AI	GATC	1 cut(s)	418
Sau96I	GGNCC	1 cut(s)	194
SchI	GAGTC	5 cut(s)	88, 118, 251, 257, 395
ScrFI	CCNGG	1 cut(s)	11
SetI	ASST	5 cut(s)	86, 108, 216, 231, 369
SfaNI	GCATC	2 cut(s)	386, 388
SfcI	CTRYAG	1 cut(s)	315
SmlI	CTYRAG	1 cut(s)	451
SmoI	CTYRAG	1 cut(s)	451
Sse9I	AATT	3 cut(s)	130, 177, 256
SsiI	CCGC	1 cut(s)	252
SspMI	CTAG	1 cut(s)	156
StyD4I	CCNGG	1 cut(s)	9
TaaI	ACNGT	1 cut(s)	137
TasI	AATT	3 cut(s)	130, 177, 256
TatI	WGTACW	1 cut(s)	329
TfiI	GAWTC	1 cut(s)	310
Tru1I	TTAA	4 cut(s)	122, 216, 425, 452
Tru9I	TTAA	4 cut(s)	122, 216, 425, 452
TspDTI	ATGAA	3 cut(s)	54, 369, 453
Tth111I	GACNNNGTC	1 cut(s)	11
Vha464I	CTTAAG	1 cut(s)	451
XagI	CCTNNNNNAGG	1 cut(s)	486
XapI	RAATTY	1 cut(s)	177
XspI	CTAG	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.