Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0030350.1

Orthogroup ID

OG0001789

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 683

Gene Structure 683 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0030350.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 281 bp

agtctgagcctgatgcttttgagagttatcaggatcttttaactgccttgaatgaaggggaggacttaaggaagaagtgcaaggtggtggaggccaggatgtacatgggggctaatgggtttgttgaagcacttctgcactttcttaactcagctgtgcgtgaagcaaatgttttggctcaagaaagtggagctatggctctattcaatcttgctgtgaatattaacagcaggattgatatcagcgttaatatgtgcttcttcgaatgcctagctcagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0033612 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0070647 GO:0070696 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KAP U-box

Protein Analysis

92

Amino Acids

10.21

Weight (kDa)

4.55

Isoelectric Point (pI)

41.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001789)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24330 AT1G24330 AT1G27910 AT1G67530 AT1G67530 AT1G67530 AT1G67530
fragaria_vesca	FvH4_4g24030 FvH4_4g24030 FvH4_4g24030
malus_domestica	MD16G1116600.v1.1
prunus_persica	Prupe.1G229500_v2.0.a1 Prupe.1G229500_v2.0.a1 Prupe.1G229500_v2.0.a1 Prupe.1G229500_v2.0.a1 Prupe.1G229500_v2.0.a1
pyrus_communis	pycom13g10100 pycom16g09990
rosa_chinensis	RchiOBHm_Chr4g0430741 RchiOBHm_Chr7g0222371 RchiOBHm_Chr7g0222381
rosa_laevigata	RLG00000002065 RLG00000002066 RLG00000006953
rosa_multiflora	Rmu_co8254499.1_g000001 Rmu_sc0008769.1_g000015 Rmu_sc0030350.1_g000001 Rmu_sc0034402.1_g000003
rosa_roxburghii	Rroxscaffold_3G00237030 Rroxscaffold_5G00372450
rosa_rugosa	Rorug04G0245300 Rorug04G0245300 Rorug04G0245400 Rorug04G0245500 Rorug07G0207800
rosa_samantha	Rh4AG301500 Rh4BG309400 Rh4CG326100 Rh4DG306400 Rh7AG350300 Rh7BG340600 Rh7BG340700 Rh7CG367800 Rh7DG346500 Rh7DG346600
rosa_wichuraiana	Rw4G026200 Rw7G029570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	41
AfaI	GTAC	1 cut(s)	103
AflII	CTTAAG	1 cut(s)	66
AgsI	TTSAA	3 cut(s)	51, 127, 207
AjnI	CCWGG	1 cut(s)	94
AluBI	AGCT	3 cut(s)	154, 193, 274
AluI	AGCT	3 cut(s)	154, 193, 274
AlwI	GGATC	1 cut(s)	41
AoxI	GGCC	1 cut(s)	92
Asp700I	GAANNNNTTC	1 cut(s)	131
AsuII	TTCGAA	1 cut(s)	263
BciT130I	CCWGG	1 cut(s)	96
BfaI	CTAG	1 cut(s)	271
BfrI	CTTAAG	1 cut(s)	66
Bme1390I	CCNGG	1 cut(s)	96
BmrFI	CCNGG	1 cut(s)	96
BmsI	GCATC	1 cut(s)	3
Bpu14I	TTCGAA	1 cut(s)	263
BpuEI	CTTGAG	1 cut(s)	164
BsaBI	GATNNNNATC	1 cut(s)	238
Bse8I	GATNNNNATC	1 cut(s)	238
BseBI	CCWGG	1 cut(s)	96
BseGI	GGATG	1 cut(s)	104
BseJI	GATNNNNATC	1 cut(s)	238
BseMII	CTCAG	1 cut(s)	164
BsgI	GTGCAG	1 cut(s)	121
BshFI	GGCC	1 cut(s)	94
BsmI	GAATGC	1 cut(s)	271
BsnI	GGCC	1 cut(s)	94
Bsp119I	TTCGAA	1 cut(s)	263
Bsp1407I	TGTACA	1 cut(s)	101
Bsp143I	GATC	1 cut(s)	33
BspANI	GGCC	1 cut(s)	94
BspCNI	CTCAG	1 cut(s)	163
BspPI	GGATC	1 cut(s)	41
BspT104I	TTCGAA	1 cut(s)	263
BspTI	CTTAAG	1 cut(s)	66
BsrGI	TGTACA	1 cut(s)	101
BssMI	GATC	1 cut(s)	33
Bst2UI	CCWGG	1 cut(s)	96
BstAFI	CTTAAG	1 cut(s)	66
BstAUI	TGTACA	1 cut(s)	101
BstBI	TTCGAA	1 cut(s)	263
BstDEI	CTNAG	3 cut(s)	5, 150, 275
BstF5I	GGATG	1 cut(s)	104
BstKTI	GATC	1 cut(s)	36
BstMBI	GATC	1 cut(s)	33
BstNI	CCWGG	1 cut(s)	96
BstSCI	CCNGG	1 cut(s)	94
BstX2I	RGATCY	1 cut(s)	33
BstYI	RGATCY	1 cut(s)	33
BsuRI	GGCC	1 cut(s)	94
BtsCI	GGATG	1 cut(s)	104
Csp6I	GTAC	1 cut(s)	102
CviAII	CATG	1 cut(s)	105
CviJI	RGCY	8 cut(s)	9, 94, 112, 154, 178, 193, 199, 274
CviKI_1	RGCY	8 cut(s)	9, 94, 112, 154, 178, 193, 199, 274
CviQI	GTAC	1 cut(s)	102
DdeI	CTNAG	3 cut(s)	5, 150, 275
DpnI	GATC	1 cut(s)	35
DpnII	GATC	1 cut(s)	33
Eco32I	GATATC	1 cut(s)	240
EcoRII	CCWGG	1 cut(s)	94
EcoRV	GATATC	1 cut(s)	240
FaeI	CATG	1 cut(s)	108
FaiI	YATR	3 cut(s)	106, 196, 253
FatI	CATG	1 cut(s)	104
FokI	GGATG	1 cut(s)	111
FspBI	CTAG	1 cut(s)	271
HaeIII	GGCC	1 cut(s)	94
Hin1II	CATG	1 cut(s)	108
Hpy188I	TCNGA	1 cut(s)	6
Hpy188III	TCNNGA	2 cut(s)	31, 181
HpyAV	CCTTC	1 cut(s)	49
HpyCH4V	TGCA	2 cut(s)	80, 138
HpyF3I	CTNAG	3 cut(s)	5, 150, 275
Hsp92II	CATG	1 cut(s)	108
Kzo9I	GATC	1 cut(s)	33
LmnI	GCTCC	1 cut(s)	190
LpnPI	CCDG	5 cut(s)	16, 23, 81, 108, 216
LweI	GCATC	1 cut(s)	3
MaeI	CTAG	1 cut(s)	271
MalI	GATC	1 cut(s)	35
MboI	GATC	1 cut(s)	33
MboII	GAAGA	2 cut(s)	84, 252
MflI	RGATCY	1 cut(s)	33
MnlI	CCTC	2 cut(s)	54, 84
MroXI	GAANNNNTTC	1 cut(s)	131
MseI	TTAA	5 cut(s)	40, 67, 146, 224, 248
MspA1I	CMGCKG	1 cut(s)	154
MspCI	CTTAAG	1 cut(s)	66
MspR9I	CCNGG	1 cut(s)	96
Mva1269I	GAATGC	1 cut(s)	271
MvaI	CCWGG	1 cut(s)	96
NdeII	GATC	1 cut(s)	33
NlaIII	CATG	1 cut(s)	108
NspV	TTCGAA	1 cut(s)	263
PctI	GAATGC	1 cut(s)	271
PdmI	GAANNNNTTC	1 cut(s)	131
Psp6I	CCWGG	1 cut(s)	94
PspGI	CCWGG	1 cut(s)	94
PsuI	RGATCY	1 cut(s)	33
PvuII	CAGCTG	1 cut(s)	154
RsaI	GTAC	1 cut(s)	103
RsaNI	GTAC	1 cut(s)	102
SaqAI	TTAA	5 cut(s)	40, 67, 146, 224, 248
Sau3AI	GATC	1 cut(s)	33
ScrFI	CCNGG	1 cut(s)	96
SetI	ASST	4 cut(s)	86, 156, 195, 276
SfaNI	GCATC	1 cut(s)	3
SfuI	TTCGAA	1 cut(s)	263
SmlI	CTYRAG	2 cut(s)	66, 179
SmoI	CTYRAG	2 cut(s)	66, 179
SspI	AATATT	1 cut(s)	222
SspMI	CTAG	1 cut(s)	271
StyD4I	CCNGG	1 cut(s)	94
TaqI	TCGA	1 cut(s)	263
TatI	WGTACW	1 cut(s)	101
Tru1I	TTAA	5 cut(s)	40, 67, 146, 224, 248
Tru9I	TTAA	5 cut(s)	40, 67, 146, 224, 248
TspDTI	ATGAA	1 cut(s)	68
Vha464I	CTTAAG	1 cut(s)	66
XcmI	CCANNNNNNNNNTGG	1 cut(s)	102
XmnI	GAANNNNTTC	1 cut(s)	131
XspI	CTAG	1 cut(s)	271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.