Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001789

Physical Location & Seq

Genomic Coordinates Forward (+)

24555943 .. 24558607

Gene Structure 2665 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00237030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGAGCAAATAAGGCTCCTGCTGAAGGATGATGAGGAGGCCAGGATGTACATGGGGGCTAATGGGTTTGTTGAAGCGCTTCTACACTATCTTAACTCAGCTGTGCGTGAAGCAAATGTTTTGGCTCAAGAAAGTGGAGCTATGGCTCTATTCAATCTTGCTGTGAATAATAACAGAAATAAGGAGACAATGCTTGCGTCAGGGGTAATTTCGTTGCTGGAGGAAATGATCTCCCATCCCAGTTCTCATGGACCTGCGACAGCCCTTTATCTGAATCTCTCCTGCCTTGAAGAAGCCCAGCCTTTAATTGGCGCAAGCCCTTCTCTTGATGCCCTCCATGCCCTATACAACCTTTCTAGCATTCCCTCAAACATTCCAAATCTTCTTTCAGCCAGTATCATCAGTGGTTTGCAATCCCTTCTTGCAGACTCCGGTGAACATTCATGGACAGAAAAATGTATAGCTGTTTTGATAAATTTGGCTTCAAGTAATTCTGCAAAAGATGAAATGATTTCAAATACGAAGCTTATCAGTGCACTAGCAGCACTTCTGGAGGCTGAACAACCCATTGAGCAGGAGCAAGCTGTCTCATGTCTCTTTATGTTGTGTAATGGGAATGAGAAATGCAGTCAGATGGTCCTGCGGGAAGGGGTAATTCCTGCATTGGTGTCGATGTCCGTTAATAGAACATCAAGAGGAAAAGAGAAAGCTCAGAAGCTGTTAATGCTGTTTCGTGAGCCTAGACAAAAGAGACCAATAACCTCCGGAGGAGAAGGTACAACTCTGCGAACAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0033612 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0070647 GO:0070696 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KAP U-box

Protein Analysis

265

Amino Acids

28.69

Weight (kDa)

5.47

Isoelectric Point (pI)

46.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARM_PUB	PF25598	111 - 248	7e-11	Plant U-box protein ARM repeat region
ARM_ARMC5	PF24768	111 - 236	4.9e-08	ARMC5

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001789)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24330 AT1G24330 AT1G27910 AT1G67530 AT1G67530 AT1G67530 AT1G67530
fragaria_vesca	FvH4_4g24030 FvH4_4g24030 FvH4_4g24030
malus_domestica	MD16G1116600.v1.1
prunus_persica	Prupe.1G229500_v2.0.a1 Prupe.1G229500_v2.0.a1 Prupe.1G229500_v2.0.a1 Prupe.1G229500_v2.0.a1 Prupe.1G229500_v2.0.a1
pyrus_communis	pycom13g10100 pycom16g09990
rosa_chinensis	RchiOBHm_Chr4g0430741 RchiOBHm_Chr7g0222371 RchiOBHm_Chr7g0222381
rosa_laevigata	RLG00000002065 RLG00000002066 RLG00000006953
rosa_multiflora	Rmu_co8254499.1_g000001 Rmu_sc0008769.1_g000015 Rmu_sc0030350.1_g000001 Rmu_sc0034402.1_g000003
rosa_roxburghii	Rroxscaffold_3G00237030 Rroxscaffold_5G00372450
rosa_rugosa	Rorug04G0245300 Rorug04G0245300 Rorug04G0245400 Rorug04G0245500 Rorug07G0207800
rosa_samantha	Rh4AG301500 Rh4BG309400 Rh4CG326100 Rh4DG306400 Rh7AG350300 Rh7BG340600 Rh7BG340700 Rh7CG367800 Rh7DG346500 Rh7DG346600
rosa_wichuraiana	Rw4G026200 Rw7G029570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	262
AccIII	TCCGGA	1 cut(s)	764
AciI	CCGC	1 cut(s)	643
AcsI	RAATTY	1 cut(s)	475
AcuI	CTGAAG	1 cut(s)	44
AfaI	GTAC	2 cut(s)	50, 778
AfeI	AGCGCT	1 cut(s)	78
AfiI	CCNNNNNNNGG	2 cut(s)	25, 308
AgsI	TTSAA	5 cut(s)	74, 154, 290, 486, 516
AjnI	CCWGG	1 cut(s)	41
AjuI	GAANNNNNNNTTGG	2 cut(s)	370, 402
AluBI	AGCT	7 cut(s)	101, 140, 464, 526, 584, 710, 718
AluI	AGCT	7 cut(s)	101, 140, 464, 526, 584, 710, 718
Alw21I	GWGCWC	1 cut(s)	538
Alw26I	GTCTC	4 cut(s)	179, 592, 599, 745
Alw44I	GTGCAC	1 cut(s)	534
AlwNI	CAGNNNCTG	1 cut(s)	718
Aor13HI	TCCGGA	1 cut(s)	764
Aor51HI	AGCGCT	1 cut(s)	78
AoxI	GGCC	1 cut(s)	39
ApaLI	GTGCAC	1 cut(s)	534
ApeKI	GCWGC	1 cut(s)	542
ApoI	RAATTY	1 cut(s)	475
Asp700I	GAANNNNTTC	1 cut(s)	78
AspLEI	GCGC	2 cut(s)	79, 314
AspS9I	GGNCC	2 cut(s)	251, 637
AsuHPI	GGTGA	1 cut(s)	446
AvaII	GGWCC	2 cut(s)	251, 637
BaeGI	GKGCMC	1 cut(s)	538
BarI	GAAGNNNNNNTAC	2 cut(s)	66, 98
Bbv12I	GWGCWC	1 cut(s)	538
BbvI	GCAGC	1 cut(s)	554
BccI	CCATC	2 cut(s)	243, 628
BcgI	CGANNNNNNTGC	2 cut(s)	651, 685
BciT130I	CCWGG	1 cut(s)	43
BcoDI	GTCTC	4 cut(s)	179, 592, 599, 745
BfaI	CTAG	3 cut(s)	357, 539, 741
BfoI	RGCGCY	1 cut(s)	80
BfuAI	ACCTGC	1 cut(s)	262
BisI	GCNGC	1 cut(s)	543
BlsI	GCNGC	1 cut(s)	544
Bme1390I	CCNGG	1 cut(s)	43
Bme18I	GGWCC	2 cut(s)	251, 637
BmgT120I	GGNCC	2 cut(s)	251, 637
BmiI	GGNNCC	1 cut(s)	17
BmrFI	CCNGG	1 cut(s)	43
BmrI	ACTGGG	1 cut(s)	234
BmsI	GCATC	1 cut(s)	319
BmuI	ACTGGG	1 cut(s)	234
BpmI	CTGGAG	2 cut(s)	239, 572
BpuEI	CTTGAG	1 cut(s)	111
BsaI	GGTCTC	1 cut(s)	745
BsaWI	WCCGGW	2 cut(s)	431, 764
Bsc4I	CCNNNNNNNGG	2 cut(s)	25, 308
Bse1I	ACTGG	2 cut(s)	240, 393
BseAI	TCCGGA	1 cut(s)	764
BseBI	CCWGG	1 cut(s)	43
BseGI	GGATG	3 cut(s)	34, 51, 235
BseLI	CCNNNNNNNGG	2 cut(s)	25, 308
BseMII	CTCAG	2 cut(s)	111, 725
BseNI	ACTGG	2 cut(s)	240, 393
BseRI	GAGGAG	2 cut(s)	50, 783
BseSI	GKGCMC	1 cut(s)	538
BseXI	GCAGC	1 cut(s)	554
BseYI	CCCAGC	1 cut(s)	297
BshFI	GGCC	1 cut(s)	41
BsiHKAI	GWGCWC	1 cut(s)	538
BsiSI	CCGG	2 cut(s)	432, 765
BslI	CCNNNNNNNGG	2 cut(s)	25, 308
BsmAI	GTCTC	4 cut(s)	179, 592, 599, 745
BsmI	GAATGC	1 cut(s)	360
BsnI	GGCC	1 cut(s)	41
Bso31I	GGTCTC	1 cut(s)	745
Bsp1286I	GDGCHC	1 cut(s)	538
Bsp13I	TCCGGA	1 cut(s)	764
Bsp1407I	TGTACA	1 cut(s)	48
Bsp143I	GATC	1 cut(s)	228
BspACI	CCGC	1 cut(s)	643
BspANI	GGCC	1 cut(s)	41
BspCNI	CTCAG	2 cut(s)	110, 724
BspEI	TCCGGA	1 cut(s)	764
BspLI	GGNNCC	1 cut(s)	17
BspMI	ACCTGC	1 cut(s)	262
BspTNI	GGTCTC	1 cut(s)	745
BsrGI	TGTACA	1 cut(s)	48
BsrI	ACTGG	2 cut(s)	240, 393
BssMI	GATC	1 cut(s)	228
Bst2UI	CCWGG	1 cut(s)	43
BstAUI	TGTACA	1 cut(s)	48
BstC8I	GCNNGC	3 cut(s)	195, 316, 582
BstDEI	CTNAG	2 cut(s)	97, 711
BstENI	CCTNNNNNAGG	1 cut(s)	23
BstF5I	GGATG	3 cut(s)	34, 51, 235
BstH2I	RGCGCY	1 cut(s)	80
BstHHI	GCGC	2 cut(s)	79, 314
BstKTI	GATC	1 cut(s)	231
BstMAI	GTCTC	4 cut(s)	179, 592, 599, 745
BstMBI	GATC	1 cut(s)	228
BstMWI	GCNNNNNNNGC	4 cut(s)	13, 338, 542, 724
BstNI	CCWGG	1 cut(s)	43
BstSCI	CCNGG	1 cut(s)	41
BstSLI	GKGCMC	1 cut(s)	538
BstV1I	GCAGC	1 cut(s)	554
BsuRI	GGCC	1 cut(s)	41
BtsCI	GGATG	3 cut(s)	34, 51, 235
BtsIMutI	CAGTG	2 cut(s)	409, 538
BveI	ACCTGC	1 cut(s)	262
Cac8I	GCNNGC	3 cut(s)	195, 316, 582
CaiI	CAGNNNCTG	1 cut(s)	718
CfoI	GCGC	2 cut(s)	79, 314
Cfr13I	GGNCC	2 cut(s)	251, 637
CseI	GACGC	1 cut(s)	186
Csp6I	GTAC	2 cut(s)	49, 777
CviAII	CATG	5 cut(s)	52, 248, 338, 444, 591
CviQI	GTAC	2 cut(s)	49, 777
DdeI	CTNAG	2 cut(s)	97, 711
DpnI	GATC	1 cut(s)	230
DpnII	GATC	1 cut(s)	228
Eco31I	GGTCTC	1 cut(s)	745
Eco47I	GGWCC	2 cut(s)	251, 637
Eco47III	AGCGCT	1 cut(s)	78
Eco57I	CTGAAG	1 cut(s)	44
EcoNI	CCTNNNNNAGG	1 cut(s)	23
EcoRII	CCWGG	1 cut(s)	41
FaeI	CATG	5 cut(s)	55, 251, 341, 447, 594
FaiI	YATR	9 cut(s)	53, 143, 249, 339, 346, 445, 461, 592, 602
FatI	CATG	5 cut(s)	51, 247, 337, 443, 590
FauI	CCCGC	1 cut(s)	636
Fnu4HI	GCNGC	1 cut(s)	543
FokI	GGATG	3 cut(s)	41, 58, 222
Fsp4HI	GCNGC	1 cut(s)	543
FspBI	CTAG	3 cut(s)	357, 539, 741
GlaI	GCGC	2 cut(s)	78, 313
GluI	GCNGC	1 cut(s)	543
GsaI	CCCAGC	1 cut(s)	301
GsuI	CTGGAG	2 cut(s)	239, 572
HaeII	RGCGCY	1 cut(s)	80
HaeIII	GGCC	1 cut(s)	41
HapII	CCGG	2 cut(s)	432, 765
HgaI	GACGC	1 cut(s)	186
HhaI	GCGC	2 cut(s)	79, 314
Hin1II	CATG	5 cut(s)	55, 251, 341, 447, 594
Hin6I	GCGC	2 cut(s)	77, 312
HinP1I	GCGC	2 cut(s)	77, 312
HindIII	AAGCTT	1 cut(s)	524
HinfI	GANTC	2 cut(s)	274, 428
HpaII	CCGG	2 cut(s)	432, 765
HphI	GGTGA	1 cut(s)	446
Hpy166II	GTNNAC	2 cut(s)	437, 536
Hpy188I	TCNGA	3 cut(s)	273, 633, 714
Hpy188III	TCNNGA	6 cut(s)	128, 326, 551, 693, 734, 765
Hpy8I	GTNNAC	2 cut(s)	437, 536
HpyAV	CCTTC	5 cut(s)	19, 330, 428, 641, 767
HpyCH4V	TGCA	6 cut(s)	412, 425, 497, 536, 627, 662
HpyF10VI	GCNNNNNNNGC	4 cut(s)	13, 338, 542, 724
HpyF3I	CTNAG	2 cut(s)	97, 711
Hsp92II	CATG	5 cut(s)	55, 251, 341, 447, 594
HspAI	GCGC	2 cut(s)	77, 312
Kpn2I	TCCGGA	1 cut(s)	764
Kzo9I	GATC	1 cut(s)	228
LmnI	GCTCC	4 cut(s)	4, 21, 137, 577
Lsp1109I	GCAGC	1 cut(s)	554
LweI	GCATC	1 cut(s)	319
MaeI	CTAG	3 cut(s)	357, 539, 741
MalI	GATC	1 cut(s)	230
MboI	GATC	1 cut(s)	228
MboII	GAAGA	2 cut(s)	302, 374
MhlI	GDGCHC	1 cut(s)	538
MluCI	AATT	5 cut(s)	207, 306, 475, 490, 654
MlyI	GAGTC	1 cut(s)	422
MnlI	CCTC	9 cut(s)	28, 31, 214, 344, 376, 547, 689, 761, 772
MroI	TCCGGA	1 cut(s)	764
MroXI	GAANNNNTTC	1 cut(s)	78
MseI	TTAA	4 cut(s)	93, 305, 681, 722
MspA1I	CMGCKG	1 cut(s)	101
MspI	CCGG	2 cut(s)	432, 765
MspR9I	CCNGG	1 cut(s)	43
Mva1269I	GAATGC	1 cut(s)	360
MvaI	CCWGG	1 cut(s)	43
MwoI	GCNNNNNNNGC	4 cut(s)	13, 338, 542, 724
NdeII	GATC	1 cut(s)	228
NlaIII	CATG	5 cut(s)	55, 251, 341, 447, 594
NlaIV	GGNNCC	1 cut(s)	17
PctI	GAATGC	1 cut(s)	360
PdmI	GAANNNNTTC	1 cut(s)	78
PfeI	GAWTC	1 cut(s)	274
PkrI	GCNGC	1 cut(s)	544
PleI	GAGTC	1 cut(s)	422
PpsI	GAGTC	1 cut(s)	422
Psp6I	CCWGG	1 cut(s)	41
PspFI	CCCAGC	1 cut(s)	297
PspGI	CCWGG	1 cut(s)	41
PspN4I	GGNNCC	1 cut(s)	17
PspPI	GGNCC	2 cut(s)	251, 637
PstNI	CAGNNNCTG	1 cut(s)	718
PvuII	CAGCTG	1 cut(s)	101
RsaI	GTAC	2 cut(s)	50, 778
RsaNI	GTAC	2 cut(s)	49, 777
SaqAI	TTAA	4 cut(s)	93, 305, 681, 722
SatI	GCNGC	1 cut(s)	543
Sau3AI	GATC	1 cut(s)	228
Sau96I	GGNCC	2 cut(s)	251, 637
SchI	GAGTC	1 cut(s)	422
ScrFI	CCNGG	1 cut(s)	43
SduI	GDGCHC	1 cut(s)	538
SfaNI	GCATC	1 cut(s)	319
SinI	GGWCC	2 cut(s)	251, 637
SmlI	CTYRAG	1 cut(s)	126
SmoI	CTYRAG	1 cut(s)	126
Sse9I	AATT	5 cut(s)	207, 306, 475, 490, 654
SsiI	CCGC	1 cut(s)	643
SspMI	CTAG	3 cut(s)	357, 539, 741
StyD4I	CCNGG	1 cut(s)	41
TaqI	TCGA	1 cut(s)	671
TasI	AATT	5 cut(s)	207, 306, 475, 490, 654
TatI	WGTACW	1 cut(s)	48
TfiI	GAWTC	1 cut(s)	274
Tru1I	TTAA	4 cut(s)	93, 305, 681, 722
Tru9I	TTAA	4 cut(s)	93, 305, 681, 722
TscAI	CASTG	2 cut(s)	409, 538
TseI	GCWGC	1 cut(s)	542
TspDTI	ATGAA	2 cut(s)	432, 519
TspGWI	ACGGA	1 cut(s)	667
TspRI	CASTG	2 cut(s)	409, 538
VneI	GTGCAC	1 cut(s)	534
VpaK11BI	GGWCC	2 cut(s)	251, 637
XagI	CCTNNNNNAGG	1 cut(s)	23
XapI	RAATTY	1 cut(s)	475
XcmI	CCANNNNNNNNNTGG	2 cut(s)	49, 305
XmnI	GAANNNNTTC	1 cut(s)	78
XspI	CTAG	3 cut(s)	357, 539, 741

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.