The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| HMA | PF00403 | 1 - 54 | 1e-12 | Heavy-metal-associated domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 203 |
| AclWI | GGATC | 1 cut(s) | 110 |
| AflIII | ACRYGT | 1 cut(s) | 201 |
| AgsI | TTSAA | 2 cut(s) | 46, 133 |
| AjuI | GAANNNNNNNTTGG | 1 cut(s) | 301 |
| AlwI | GGATC | 1 cut(s) | 110 |
| ApeKI | GCWGC | 1 cut(s) | 261 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 188, 220 |
| AseI | ATTAAT | 1 cut(s) | 233 |
| BbvI | GCAGC | 1 cut(s) | 248 |
| BisI | GCNGC | 1 cut(s) | 262 |
| BlsI | GCNGC | 1 cut(s) | 263 |
| BsaBI | GATNNNNATC | 1 cut(s) | 303 |
| Bse3DI | GCAATG | 1 cut(s) | 16 |
| Bse8I | GATNNNNATC | 1 cut(s) | 303 |
| BseGI | GGATG | 1 cut(s) | 241 |
| BseJI | GATNNNNATC | 1 cut(s) | 303 |
| BseMI | GCAATG | 1 cut(s) | 16 |
| BseXI | GCAGC | 1 cut(s) | 248 |
| Bsh1236I | CGCG | 1 cut(s) | 203 |
| Bsp143I | GATC | 2 cut(s) | 115, 274 |
| BspFNI | CGCG | 1 cut(s) | 203 |
| BspPI | GGATC | 1 cut(s) | 110 |
| BsrDI | GCAATG | 1 cut(s) | 16 |
| BssMI | GATC | 2 cut(s) | 115, 274 |
| BstDEI | CTNAG | 1 cut(s) | 140 |
| BstF5I | GGATG | 1 cut(s) | 241 |
| BstFNI | CGCG | 1 cut(s) | 203 |
| BstKTI | GATC | 2 cut(s) | 118, 277 |
| BstMBI | GATC | 2 cut(s) | 115, 274 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 270 |
| BstNSI | RCATGY | 1 cut(s) | 18 |
| BstUI | CGCG | 1 cut(s) | 203 |
| BstV1I | GCAGC | 1 cut(s) | 248 |
| BtsCI | GGATG | 1 cut(s) | 241 |
| BtsI | GCAGTG | 1 cut(s) | 4 |
| BtsIMutI | CAGTG | 1 cut(s) | 4 |
| CseI | GACGC | 2 cut(s) | 192, 209 |
| CviAII | CATG | 3 cut(s) | 15, 79, 250 |
| DdeI | CTNAG | 1 cut(s) | 140 |
| DpnI | GATC | 2 cut(s) | 117, 276 |
| DpnII | GATC | 2 cut(s) | 115, 274 |
| EcoT22I | ATGCAT | 1 cut(s) | 16 |
| FaeI | CATG | 3 cut(s) | 18, 82, 253 |
| FaiI | YATR | 5 cut(s) | 16, 80, 251, 287, 323 |
| FatI | CATG | 3 cut(s) | 14, 78, 249 |
| Fnu4HI | GCNGC | 1 cut(s) | 262 |
| FokI | GGATG | 1 cut(s) | 228 |
| Fsp4HI | GCNGC | 1 cut(s) | 262 |
| GluI | GCNGC | 1 cut(s) | 262 |
| HgaI | GACGC | 2 cut(s) | 192, 209 |
| Hin1II | CATG | 3 cut(s) | 18, 82, 253 |
| HinfI | GANTC | 1 cut(s) | 304 |
| Hpy188I | TCNGA | 1 cut(s) | 208 |
| Hpy188III | TCNNGA | 1 cut(s) | 119 |
| HpyAV | CCTTC | 1 cut(s) | 206 |
| HpyCH4V | TGCA | 5 cut(s) | 4, 9, 14, 71, 264 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 270 |
| HpyF3I | CTNAG | 1 cut(s) | 140 |
| Hsp92II | CATG | 3 cut(s) | 18, 82, 253 |
| Kzo9I | GATC | 2 cut(s) | 115, 274 |
| LmnI | GCTCC | 1 cut(s) | 61 |
| LpnPI | CCDG | 1 cut(s) | 132 |
| Lsp1109I | GCAGC | 1 cut(s) | 248 |
| MaeIII | GTNAC | 2 cut(s) | 100, 279 |
| MalI | GATC | 2 cut(s) | 117, 276 |
| MboI | GATC | 2 cut(s) | 115, 274 |
| MboII | GAAGA | 3 cut(s) | 121, 145, 169 |
| MluCI | AATT | 2 cut(s) | 217, 234 |
| MluI | ACGCGT | 1 cut(s) | 201 |
| Mph1103I | ATGCAT | 1 cut(s) | 16 |
| MseI | TTAA | 1 cut(s) | 233 |
| MslI | CAYNNNNRTG | 1 cut(s) | 9 |
| MvnI | CGCG | 1 cut(s) | 203 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 270 |
| NdeII | GATC | 2 cut(s) | 115, 274 |
| NlaIII | CATG | 3 cut(s) | 18, 82, 253 |
| NsiI | ATGCAT | 1 cut(s) | 16 |
| NspI | RCATGY | 1 cut(s) | 18 |
| PfeI | GAWTC | 1 cut(s) | 304 |
| PkrI | GCNGC | 1 cut(s) | 263 |
| PshBI | ATTAAT | 1 cut(s) | 233 |
| RseI | CAYNNNNRTG | 1 cut(s) | 9 |
| SaqAI | TTAA | 1 cut(s) | 233 |
| SatI | GCNGC | 1 cut(s) | 262 |
| Sau3AI | GATC | 2 cut(s) | 115, 274 |
| SetI | ASST | 2 cut(s) | 96, 129 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 9 |
| Sse9I | AATT | 2 cut(s) | 217, 234 |
| TasI | AATT | 2 cut(s) | 217, 234 |
| TfiI | GAWTC | 1 cut(s) | 304 |
| Tru1I | TTAA | 1 cut(s) | 233 |
| Tru9I | TTAA | 1 cut(s) | 233 |
| TseI | GCWGC | 1 cut(s) | 261 |
| TspDTI | ATGAA | 3 cut(s) | 95, 225, 230 |
| VspI | ATTAAT | 1 cut(s) | 233 |
| XceI | RCATGY | 1 cut(s) | 18 |
| Zsp2I | ATGCAT | 1 cut(s) | 16 |