FvH4_4g24020

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000613
Physical Location & Seq
Reverse (-)
26296391 .. 26299670
3280 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g24020.t2

Sequence Viewer

Length: 834 bp
ATGAGGCAGCTCGACTTCAGCAGTCTCCAGACCACCGCGCCGTTGCTCGGCGATAGCAGCGGGTTTTCTGGTGGGTTTCCCGGTGACTTTTCAGCTGCGCCGTCGTTTGAGGTCCCTGTTACTGATGATTTTGATGGATTTCAGAAAGAAGCTAGAGATATGGTGAAGTCGAAGAAGGGGACTACCACTCTTGCCTTTATTTTCAAGGACGGGGTTATGGTGGCGGCGGATTCTCGAGCTAGCATGGGAGGATATATATCGTCTCAGTCTGTGAAGAAGATTATCGAAATCAATCCTTACATGCTTGGAACTATGGCTGGAGGAGCTGCTGACTGCCAGTTTTGGCATAGGAATTTGGGGATTAAGTGCAGACTTCATGAATTGGCAAACAAGCGCAGAATTTCGGTTACAGGTGCGTCCAAGCTCCTGGCCAACATTCTGTACTCTTACCGTGGCATGGGTCTGTCTGTTGGAACAATGATAGCTGGTTGGGATGAAACGGGTCCTGGACTTTACTATGTGGACAGCGAGGGAGGAAGGTTGAAAGGCATGCGGTTTTCAGTTGGATCTGGTTCACCATATGCTTATGGTGTCCTGGATAACGGGTACCGCTATGATATGTCAGTTGAAGAAGCTTCTGAGCTTGCCAGGAGAGCCATATATCATGCAACATTCCGTGATGGAGCTAGTGGTGGAGTTGCCAGCGTTTACCATGTCGGTCCAAATGGGTGGAAAAAGCTATCTGGAGATGATGTCGGGGAACTTCACTACGAATACTATCCTGTAACCCCTGAGACCGTGGAACAAGAAATGGTGGAAGTAGGTGCAGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005839 GO:0019774 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1905368 GO:1905369
KEGG Pathways
Metabolic & Signaling
ko03050 map03050
Pfam Domains
Protein Families
Proteasome

Protein Analysis

278

Amino Acids

29.9

Weight (kDa)

5.59

Isoelectric Point (pI)

39.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Proteasome PF00227 58 - 203 6.9e-41 Proteasome subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 606
AccB1I GGYRCC 1 cut(s) 606
AccII CGCG 1 cut(s) 38
AciI CCGC 6 cut(s) 36, 60, 224, 227, 553, 610
AclWI GGATC 1 cut(s) 574
AcoI YGGCCR 1 cut(s) 429
AcsI RAATTY 2 cut(s) 352, 399
AfaI GTAC 2 cut(s) 443, 608
AfiI CCNNNNNNNGG 2 cut(s) 47, 457
AgsI TTSAA 3 cut(s) 205, 544, 629
AjnI CCWGG 4 cut(s) 426, 505, 594, 647
Alw26I GTCTC 3 cut(s) 29, 267, 788
AlwI GGATC 1 cut(s) 574
Ama87I CYCGRG 1 cut(s) 234
AoxI GGCC 1 cut(s) 429
ApeKI GCWGC 5 cut(s) 7, 57, 95, 326, 827
ApoI RAATTY 2 cut(s) 352, 399
Asp718I GGTACC 1 cut(s) 606
AspLEI GCGC 3 cut(s) 40, 100, 396
AspS9I GGNCC 3 cut(s) 112, 503, 719
AsuC2I CCSGG 1 cut(s) 81
AsuHPI GGTGA 3 cut(s) 95, 175, 567
AsuNHI GCTAGC 1 cut(s) 239
AvaI CYCGRG 1 cut(s) 234
AvaII GGWCC 3 cut(s) 112, 503, 719
BalI TGGCCA 1 cut(s) 431
BanI GGYRCC 1 cut(s) 606
BbvI GCAGC 4 cut(s) 19, 69, 82, 313
BccI CCATC 2 cut(s) 128, 674
BceAI ACGGC 2 cut(s) 25, 85
BciT130I CCWGG 4 cut(s) 428, 507, 596, 649
BcnI CCSGG 1 cut(s) 81
BcoDI GTCTC 3 cut(s) 29, 267, 788
BfaI CTAG 3 cut(s) 153, 240, 687
BisI GCNGC 6 cut(s) 8, 58, 96, 225, 327, 828
BlsI GCNGC 6 cut(s) 9, 59, 97, 226, 328, 829
Bme1390I CCNGG 5 cut(s) 81, 428, 507, 596, 649
Bme18I GGWCC 3 cut(s) 112, 503, 719
BmeT110I CYCGRG 1 cut(s) 234
BmgT120I GGNCC 3 cut(s) 112, 503, 719
BmiI GGNNCC 3 cut(s) 114, 504, 608
BmrFI CCNGG 5 cut(s) 81, 428, 507, 596, 649
BmtI GCTAGC 1 cut(s) 243
BpmI CTGGAG 3 cut(s) 11, 339, 765
BpuMI CCSGG 1 cut(s) 81
BsaBI GATNNNNATC 1 cut(s) 256
BsaI GGTCTC 1 cut(s) 788
BsaJI CCNNGG 2 cut(s) 451, 798
BsaXI ACNNNNNCTCC 2 cut(s) 738, 768
Bsc4I CCNNNNNNNGG 2 cut(s) 47, 457
Bse1I ACTGG 1 cut(s) 337
Bse8I GATNNNNATC 1 cut(s) 256
BseBI CCWGG 4 cut(s) 428, 507, 596, 649
BseDI CCNNGG 2 cut(s) 451, 798
BseGI GGATG 1 cut(s) 499
BseJI GATNNNNATC 1 cut(s) 256
BseLI CCNNNNNNNGG 2 cut(s) 47, 457
BseMII CTCAG 3 cut(s) 278, 630, 783
BseNI ACTGG 1 cut(s) 337
BseRI GAGGAG 1 cut(s) 336
BseXI GCAGC 4 cut(s) 19, 69, 82, 313
BsgI GTGCAG 1 cut(s) 388
Bsh1236I CGCG 1 cut(s) 38
BshFI GGCC 1 cut(s) 431
BshNI GGYRCC 1 cut(s) 606
BsiHKCI CYCGRG 1 cut(s) 234
BsiSI CCGG 1 cut(s) 81
BslFI GGGAC 2 cut(s) 98, 193
BslI CCNNNNNNNGG 2 cut(s) 47, 457
BsmAI GTCTC 3 cut(s) 29, 267, 788
BsmBI CGTCTC 1 cut(s) 267
BsmFI GGGAC 2 cut(s) 98, 193
BsnI GGCC 1 cut(s) 431
Bso31I GGTCTC 1 cut(s) 788
BsoBI CYCGRG 1 cut(s) 234
Bsp143I GATC 1 cut(s) 566
BspACI CCGC 6 cut(s) 36, 60, 224, 227, 553, 610
BspANI GGCC 1 cut(s) 431
BspCNI CTCAG 3 cut(s) 277, 631, 784
BspFNI CGCG 1 cut(s) 38
BspHI TCATGA 1 cut(s) 376
BspLI GGNNCC 3 cut(s) 114, 504, 608
BspOI GCTAGC 1 cut(s) 243
BspPI GGATC 1 cut(s) 574
BspT107I GGYRCC 1 cut(s) 606
BspTNI GGTCTC 1 cut(s) 788
BsrI ACTGG 1 cut(s) 337
BssECI CCNNGG 2 cut(s) 451, 798
BssMI GATC 1 cut(s) 566
Bst2UI CCWGG 4 cut(s) 428, 507, 596, 649
Bst4CI ACNGT 2 cut(s) 452, 799
BstC8I GCNNGC 4 cut(s) 241, 551, 645, 703
BstDEI CTNAG 3 cut(s) 264, 639, 792
BstDSI CCRYGG 2 cut(s) 451, 798
BstF5I GGATG 1 cut(s) 499
BstFNI CGCG 1 cut(s) 38
BstHHI GCGC 3 cut(s) 40, 100, 396
BstKTI GATC 1 cut(s) 569
BstMAI GTCTC 3 cut(s) 29, 267, 788
BstMBI GATC 1 cut(s) 566
BstMWI GCNNNNNNNGC 3 cut(s) 57, 323, 653
BstNI CCWGG 4 cut(s) 428, 507, 596, 649
BstNSI RCATGY 2 cut(s) 304, 553
BstSCI CCNGG 5 cut(s) 79, 426, 505, 594, 647
BstUI CGCG 1 cut(s) 38
BstV1I GCAGC 4 cut(s) 19, 69, 82, 313
BstX2I RGATCY 1 cut(s) 566
BstXI CCANNNNNNTGG 2 cut(s) 427, 729
BstYI RGATCY 1 cut(s) 566
BsuRI GGCC 1 cut(s) 431
BtgI CCRYGG 2 cut(s) 451, 798
BtsCI GGATG 1 cut(s) 499
Cac8I GCNNGC 4 cut(s) 241, 551, 645, 703
CciI TCATGA 1 cut(s) 376
CfoI GCGC 3 cut(s) 40, 100, 396
Cfr13I GGNCC 3 cut(s) 112, 503, 719
CseI GACGC 1 cut(s) 405
Csp6I GTAC 2 cut(s) 442, 607
CviAII CATG 7 cut(s) 244, 301, 377, 457, 550, 665, 713
CviQI GTAC 2 cut(s) 442, 607
DdeI CTNAG 3 cut(s) 264, 639, 792
DpnI GATC 1 cut(s) 568
DpnII GATC 1 cut(s) 566
EaeI YGGCCR 1 cut(s) 429
EciI GGCGGA 1 cut(s) 242
Eco31I GGTCTC 1 cut(s) 788
Eco47I GGWCC 3 cut(s) 112, 503, 719
Eco88I CYCGRG 1 cut(s) 234
EcoO109I RGGNCCY 2 cut(s) 112, 503
EcoRII CCWGG 4 cut(s) 426, 505, 594, 647
Esp3I CGTCTC 1 cut(s) 267
FaeI CATG 7 cut(s) 247, 304, 380, 460, 553, 668, 716
FaqI GGGAC 2 cut(s) 98, 193
FatI CATG 7 cut(s) 243, 300, 376, 456, 549, 664, 712
FauI CCCGC 1 cut(s) 53
FauNDI CATATG 1 cut(s) 580
Fnu4HI GCNGC 6 cut(s) 8, 58, 96, 225, 327, 828
FokI GGATG 1 cut(s) 506
Fsp4HI GCNGC 6 cut(s) 8, 58, 96, 225, 327, 828
FspBI CTAG 3 cut(s) 153, 240, 687
GlaI GCGC 3 cut(s) 39, 99, 395
GluI GCNGC 6 cut(s) 8, 58, 96, 225, 327, 828
GsuI CTGGAG 3 cut(s) 11, 339, 765
HaeIII GGCC 1 cut(s) 431
HapII CCGG 1 cut(s) 81
HgaI GACGC 1 cut(s) 405
HhaI GCGC 3 cut(s) 40, 100, 396
Hin1II CATG 7 cut(s) 247, 304, 380, 460, 553, 668, 716
Hin6I GCGC 3 cut(s) 38, 98, 394
HinP1I GCGC 3 cut(s) 38, 98, 394
HindIII AAGCTT 1 cut(s) 633
HinfI GANTC 1 cut(s) 230
HpaII CCGG 1 cut(s) 81
HphI GGTGA 3 cut(s) 95, 175, 567
Hpy166II GTNNAC 3 cut(s) 523, 575, 709
Hpy188I TCNGA 2 cut(s) 144, 640
Hpy188III TCNNGA 4 cut(s) 28, 234, 377, 744
Hpy8I GTNNAC 3 cut(s) 523, 575, 709
Hpy99I CGWCG 1 cut(s) 106
HpyAV CCTTC 2 cut(s) 169, 531
HpyCH4III ACNGT 2 cut(s) 452, 799
HpyCH4V TGCA 3 cut(s) 369, 668, 827
HpyF10VI GCNNNNNNNGC 3 cut(s) 57, 323, 653
HpyF3I CTNAG 3 cut(s) 264, 639, 792
Hsp92II CATG 7 cut(s) 247, 304, 380, 460, 553, 668, 716
HspAI GCGC 3 cut(s) 38, 98, 394
KpnI GGTACC 1 cut(s) 610
Kzo9I GATC 1 cut(s) 566
LmnI GCTCC 3 cut(s) 323, 429, 683
Lsp1109I GCAGC 4 cut(s) 19, 69, 82, 313
MaeI CTAG 3 cut(s) 153, 240, 687
MaeIII GTNAC 4 cut(s) 83, 118, 406, 784
MalI GATC 1 cut(s) 568
MboI GATC 1 cut(s) 566
MboII GAAGA 4 cut(s) 184, 286, 289, 641
MflI RGATCY 1 cut(s) 566
MlsI TGGCCA 1 cut(s) 431
MluCI AATT 3 cut(s) 352, 380, 399
MluNI TGGCCA 1 cut(s) 431
MmeI TCCRAC 2 cut(s) 451, 544
MnlI CCTC 5 cut(s) 103, 242, 314, 523, 527
Mox20I TGGCCA 1 cut(s) 431
MscI TGGCCA 1 cut(s) 431
MseI TTAA 1 cut(s) 363
Msp20I TGGCCA 1 cut(s) 431
MspA1I CMGCKG 2 cut(s) 60, 95
MspI CCGG 1 cut(s) 81
MspR9I CCNGG 5 cut(s) 81, 428, 507, 596, 649
MvaI CCWGG 4 cut(s) 428, 507, 596, 649
MvnI CGCG 1 cut(s) 38
MwoI GCNNNNNNNGC 3 cut(s) 57, 323, 653
NciI CCSGG 1 cut(s) 81
NdeI CATATG 1 cut(s) 580
NdeII GATC 1 cut(s) 566
NheI GCTAGC 1 cut(s) 239
NlaIII CATG 7 cut(s) 247, 304, 380, 460, 553, 668, 716
NlaIV GGNNCC 3 cut(s) 114, 504, 608
NmeAIII GCCGAG 1 cut(s) 27
NmuCI GTSAC 1 cut(s) 83
NspI RCATGY 2 cut(s) 304, 553
PaeI GCATGC 1 cut(s) 553
PaeR7I CTCGAG 1 cut(s) 234
PagI TCATGA 1 cut(s) 376
PfeI GAWTC 1 cut(s) 230
PfoI TCCNGGA 2 cut(s) 505, 594
PkrI GCNGC 6 cut(s) 9, 59, 97, 226, 328, 829
PpuMI RGGWCCY 2 cut(s) 112, 503
Psp5II RGGWCCY 2 cut(s) 112, 503
Psp6I CCWGG 4 cut(s) 426, 505, 594, 647
PspGI CCWGG 4 cut(s) 426, 505, 594, 647
PspN4I GGNNCC 3 cut(s) 114, 504, 608
PspPI GGNCC 3 cut(s) 112, 503, 719
PspPPI RGGWCCY 2 cut(s) 112, 503
PsuI RGATCY 1 cut(s) 566
PvuII CAGCTG 1 cut(s) 95
RsaI GTAC 2 cut(s) 443, 608
RsaNI GTAC 2 cut(s) 442, 607
SaqAI TTAA 1 cut(s) 363
SatI GCNGC 6 cut(s) 8, 58, 96, 225, 327, 828
Sau3AI GATC 1 cut(s) 566
Sau96I GGNCC 3 cut(s) 112, 503, 719
ScrFI CCNGG 5 cut(s) 81, 428, 507, 596, 649
Sfr274I CTCGAG 1 cut(s) 234
SinI GGWCC 3 cut(s) 112, 503, 719
SlaI CTCGAG 1 cut(s) 234
SmlI CTYRAG 1 cut(s) 234
SmoI CTYRAG 1 cut(s) 234
SphI GCATGC 1 cut(s) 553
Sse9I AATT 3 cut(s) 352, 380, 399
SsiI CCGC 6 cut(s) 36, 60, 224, 227, 553, 610
SspMI CTAG 3 cut(s) 153, 240, 687
StyD4I CCNGG 5 cut(s) 79, 426, 505, 594, 647
TaaI ACNGT 2 cut(s) 452, 799
TaqI TCGA 4 cut(s) 12, 170, 235, 285
TaqII GACCGA 1 cut(s) 707
TasI AATT 3 cut(s) 352, 380, 399
TatI WGTACW 1 cut(s) 441
TauI GCSGC 1 cut(s) 227
TfiI GAWTC 1 cut(s) 230
Tru1I TTAA 1 cut(s) 363
Tru9I TTAA 1 cut(s) 363
TseFI GTSAC 1 cut(s) 83
TseI GCWGC 5 cut(s) 7, 57, 95, 326, 827
Tsp45I GTSAC 1 cut(s) 83
TspDTI ATGAA 3 cut(s) 365, 393, 510
TspGWI ACGGA 1 cut(s) 665
VpaK11BI GGWCC 3 cut(s) 112, 503, 719
XapI RAATTY 2 cut(s) 352, 399
XceI RCATGY 2 cut(s) 304, 553
XhoI CTCGAG 1 cut(s) 234
XspI CTAG 3 cut(s) 153, 240, 687
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.