Rh4BG230300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000613
Physical Location & Seq
Reverse (-)
39498993 .. 39499256
264 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG230300.1

Sequence Viewer

Length: 183 bp
ATGGCCGACGGCGAGTCTCCGGAACCGTATTCCGTCCAGATAATGCACAAAGGAACAACCAATTTTGGTTTTATATATGAGGGAGGTGTAGTATTAGGAGGGGATTCCAGAATCAGCGTTTATCACACAGATAACAACGTTGTATACGATCATATCGGTAAGAGAATTATCATGAGTTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

60

Amino Acids

6.62

Weight (kDa)

5.33

Isoelectric Point (pI)

61.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 144
AccIII TCCGGA 1 cut(s) 19
AclI AACGTT 1 cut(s) 138
AcoI YGGCCR 1 cut(s) 3
AhdI GACNNNNNGTC 1 cut(s) 13
Alw26I GTCTC 1 cut(s) 21
Aor13HI TCCGGA 1 cut(s) 19
AoxI GGCC 1 cut(s) 3
BceAI ACGGC 1 cut(s) 25
BcoDI GTCTC 1 cut(s) 21
BmeRI GACNNNNNGTC 1 cut(s) 13
BmiI GGNNCC 1 cut(s) 24
BsaWI WCCGGW 1 cut(s) 19
BsaXI ACNNNNNCTCC 2 cut(s) 75, 105
BseAI TCCGGA 1 cut(s) 19
BshFI GGCC 1 cut(s) 5
BsiSI CCGG 1 cut(s) 20
BsmAI GTCTC 1 cut(s) 21
BsnI GGCC 1 cut(s) 5
Bsp13I TCCGGA 1 cut(s) 19
Bsp143I GATC 1 cut(s) 148
BspANI GGCC 1 cut(s) 5
BspEI TCCGGA 1 cut(s) 19
BspHI TCATGA 1 cut(s) 171
BspLI GGNNCC 1 cut(s) 24
BssMI GATC 1 cut(s) 148
BssNAI GTATAC 1 cut(s) 145
Bst1107I GTATAC 1 cut(s) 145
Bst4CI ACNGT 1 cut(s) 27
BstKTI GATC 1 cut(s) 151
BstMAI GTCTC 1 cut(s) 21
BstMBI GATC 1 cut(s) 148
BstZ17I GTATAC 1 cut(s) 145
BsuRI GGCC 1 cut(s) 5
CciI TCATGA 1 cut(s) 171
CviAII CATG 1 cut(s) 172
CviJI RGCY 1 cut(s) 5
CviKI_1 RGCY 1 cut(s) 5
DpnI GATC 1 cut(s) 150
DpnII GATC 1 cut(s) 148
DriI GACNNNNNGTC 1 cut(s) 13
EaeI YGGCCR 1 cut(s) 3
Eam1105I GACNNNNNGTC 1 cut(s) 13
FaeI CATG 1 cut(s) 175
FaiI YATR 7 cut(s) 74, 76, 78, 145, 153, 173, 181
FatI CATG 1 cut(s) 171
FblI GTMKAC 1 cut(s) 144
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 20
Hin1II CATG 1 cut(s) 175
HinfI GANTC 3 cut(s) 14, 104, 111
HpaII CCGG 1 cut(s) 20
Hpy166II GTNNAC 1 cut(s) 145
Hpy188III TCNNGA 4 cut(s) 20, 37, 108, 172
Hpy8I GTNNAC 1 cut(s) 145
Hpy99I CGWCG 1 cut(s) 11
HpyCH4III ACNGT 1 cut(s) 27
HpyCH4IV ACGT 1 cut(s) 138
HpyCH4V TGCA 1 cut(s) 46
HpySE526I ACGT 1 cut(s) 138
Hsp92II CATG 1 cut(s) 175
Kpn2I TCCGGA 1 cut(s) 19
Kzo9I GATC 1 cut(s) 148
LpnPI CCDG 3 cut(s) 33, 50, 121
MaeII ACGT 1 cut(s) 138
MalI GATC 1 cut(s) 150
MboI GATC 1 cut(s) 148
MluCI AATT 2 cut(s) 61, 165
MlyI GAGTC 1 cut(s) 23
MnlI CCTC 3 cut(s) 73, 77, 92
MroI TCCGGA 1 cut(s) 19
MspI CCGG 1 cut(s) 20
NdeII GATC 1 cut(s) 148
NlaIII CATG 1 cut(s) 175
NlaIV GGNNCC 1 cut(s) 24
PagI TCATGA 1 cut(s) 171
PcsI WCGNNNNNNNCGW 1 cut(s) 144
PfeI GAWTC 2 cut(s) 104, 111
PleI GAGTC 1 cut(s) 22
PpsI GAGTC 1 cut(s) 22
Psp1406I AACGTT 1 cut(s) 138
PspN4I GGNNCC 1 cut(s) 24
Sau3AI GATC 1 cut(s) 148
SchI GAGTC 1 cut(s) 23
SetI ASST 2 cut(s) 88, 141
SgeI CNNG 4 cut(s) 25, 32, 49, 120
Sse9I AATT 2 cut(s) 61, 165
TaaI ACNGT 1 cut(s) 27
TaiI ACGT 1 cut(s) 141
TasI AATT 2 cut(s) 61, 165
TfiI GAWTC 2 cut(s) 104, 111
TspGWI ACGGA 1 cut(s) 22
XmiI GTMKAC 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.