Rorug05G0025600

subunit, beta

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
1638253 .. 1642263
4011 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0025600.1

Sequence Viewer

Length: 987 bp
ATGAGAAAGATCGGTCATCGGAGTAAGAGTACTAGTACTGAGTCGACGTCGTCGGGACCACGGAAGGAGCTGTTGATGCGCGCCATAGTTGCTACGAGTGAAGGTCAACTCAAAGTACAACTGGTGCCTAGACCAGTACCCAAAGCAAACGAGGTACTTGTCAAAGTAGACTACGCCGGGGTCAACGGACCCGACGTTGAAGAGAGCAAGCACGGCAAGTCACCTCAGATCAAGGAACTTGAGGAGGATGGAACTAAAAGCAAGTATTTGGGTCTAGAGTGTTCAGGAACCATCAGTGCTCTTGGGGAGGGGATCTCCAAAAAAGACAAGCAAATCTGGAAAAAAGACACTAAGGTGTGTGCCATTGTTTTTGGCGGTGCCTATGCGGAGTACGTTGCTGTTCCAGTAGGACACCTTCTGAAATTCACAACAAAGATTACCGTCAAGCAAGCTGCTTGCACCGTCTGGTCCGAATTGTTCATGAAGAAAAGGCTAGATGAGGGGCTTGCATTAGAGGAGGAAGAAGGGAGTCGGCTTTCTTCAGGCGAGACAGTTTTGATTCATGGAGGCTGCAGTGGAATTGGCATATTTGCGATTCAGATGGCTAAGCACCAGGGAGCCATTGTATTTGCAACAGCAGGTACCGACGCAAAGATAGCTGAATGTAAACGTCTTGGAGCTGACCTATGCATCAACTATAACAAAAATGACTTTGTTGAAGTGATAAGGGACAGCACTAAAGGCCAAGGCGTTGATGTTATCTTGGATTGCGTTGGGTTTAAGTATTTTCAGAGAAATCTTGAATGCCTGAAGGAAGGTGGGAGACTTGTTCAAATTGGTGGCTGTTGGATGACACAATACGATTCTTATGGAAAAGTACAAAAGCTCTTTTCAAATTTCAAATGCATTGATGTGGCTGCCTTGGTATACAGAACTCCAGAGATGAAGACTTCCATTGTTGAGGAGGTTCAGTGGCTGAGTAGTTAA

Protein Analysis

328

Amino Acids

35.9

Weight (kDa)

8.55

Isoelectric Point (pI)

32.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 49 - 141 6.2e-10 Alcohol dehydrogenase GroES-like domain
ADH_zinc_N PF00107 193 - 289 4.3e-29 Zinc-binding dehydrogenase
ADH_zinc_N_2 PF13602 225 - 283 2.1e-12 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 50
Acc36I ACCTGC 1 cut(s) 629
Acc65I GGTACC 1 cut(s) 641
AccB1I GGYRCC 3 cut(s) 124, 377, 641
AccI GTMKAC 3 cut(s) 44, 168, 927
AccII CGCG 1 cut(s) 81
AciI CCGC 2 cut(s) 375, 386
AclWI GGATC 1 cut(s) 320
AcsI RAATTY 2 cut(s) 422, 895
AcuI CTGAAG 2 cut(s) 525, 830
AcyI GRCGYC 1 cut(s) 47
AfaI GTAC 8 cut(s) 31, 37, 117, 138, 156, 392, 643, 879
AgsI TTSAA 6 cut(s) 200, 719, 803, 833, 894, 901
AhlI ACTAGT 1 cut(s) 32
AjnI CCWGG 1 cut(s) 612
AleI CACNNNNGTG 1 cut(s) 353
AluBI AGCT 5 cut(s) 70, 452, 659, 680, 886
AluI AGCT 5 cut(s) 70, 452, 659, 680, 886
Alw21I GWGCWC 1 cut(s) 301
Alw26I GTCTC 2 cut(s) 542, 817
AlwI GGATC 1 cut(s) 320
AlwNI CAGNNNCTG 1 cut(s) 976
AoxI GGCC 1 cut(s) 742
ApeKI GCWGC 3 cut(s) 452, 570, 917
ApoI RAATTY 2 cut(s) 422, 895
Asp718I GGTACC 1 cut(s) 641
AspLEI GCGC 2 cut(s) 81, 83
AspS9I GGNCC 3 cut(s) 56, 188, 468
AsuC2I CCSGG 1 cut(s) 178
AsuHPI GGTGA 1 cut(s) 213
AvaII GGWCC 3 cut(s) 56, 188, 468
BanI GGYRCC 3 cut(s) 124, 377, 641
BarI GAAGNNNNNNTAC 2 cut(s) 399, 431
BbsI GAAGAC 1 cut(s) 953
Bbv12I GWGCWC 1 cut(s) 301
BbvI GCAGC 3 cut(s) 439, 557, 904
BccI CCATC 3 cut(s) 242, 299, 595
BceAI ACGGC 1 cut(s) 229
BciT130I CCWGG 1 cut(s) 614
BcnI CCSGG 1 cut(s) 178
BcoDI GTCTC 2 cut(s) 542, 817
BcuI ACTAGT 1 cut(s) 32
BfaI CTAG 4 cut(s) 33, 129, 275, 494
BfmI CTRYAG 1 cut(s) 571
BfuAI ACCTGC 1 cut(s) 629
BisI GCNGC 3 cut(s) 453, 571, 918
BlpI GCTNAGC 1 cut(s) 606
BlsI GCNGC 3 cut(s) 454, 572, 919
BmcAI AGTACT 2 cut(s) 31, 37
Bme1390I CCNGG 2 cut(s) 178, 614
Bme18I GGWCC 3 cut(s) 56, 188, 468
BmgT120I GGNCC 3 cut(s) 56, 188, 468
BmiI GGNNCC 7 cut(s) 57, 126, 190, 289, 379, 619, 643
BmrFI CCNGG 2 cut(s) 178, 614
BmsI GCATC 2 cut(s) 66, 699
BpiI GAAGAC 1 cut(s) 953
BplI GAGNNNNNCTC 2 cut(s) 299, 331
BpmI CTGGAG 1 cut(s) 921
Bpu1102I GCTNAGC 1 cut(s) 606
BpuEI CTTGAG 1 cut(s) 260
BpuMI CCSGG 1 cut(s) 178
BsaHI GRCGYC 1 cut(s) 47
BsaJI CCNNGG 5 cut(s) 59, 177, 613, 745, 921
BsaXI ACNNNNNCTCC 6 cut(s) 13, 43, 609, 639, 956, 986
Bse1I ACTGG 3 cut(s) 126, 134, 404
BseBI CCWGG 1 cut(s) 614
BseDI CCNNGG 5 cut(s) 59, 177, 613, 745, 921
BseGI GGATG 2 cut(s) 253, 855
BseMII CTCAG 3 cut(s) 30, 239, 968
BseNI ACTGG 3 cut(s) 126, 134, 404
BsePI GCGCGC 1 cut(s) 79
BseRI GAGGAG 3 cut(s) 257, 530, 977
BseXI GCAGC 3 cut(s) 439, 557, 904
Bsh1236I CGCG 1 cut(s) 81
BshFI GGCC 1 cut(s) 744
BshNI GGYRCC 3 cut(s) 124, 377, 641
BsiHKAI GWGCWC 1 cut(s) 301
BsiSI CCGG 1 cut(s) 177
BslFI GGGAC 2 cut(s) 69, 743
BsmAI GTCTC 2 cut(s) 542, 817
BsmFI GGGAC 2 cut(s) 69, 743
BsmI GAATGC 1 cut(s) 809
BsnI GGCC 1 cut(s) 744
Bsp1286I GDGCHC 1 cut(s) 301
Bsp143I GATC 3 cut(s) 9, 228, 312
Bsp1720I GCTNAGC 1 cut(s) 606
BspACI CCGC 2 cut(s) 375, 386
BspANI GGCC 1 cut(s) 744
BspCNI CTCAG 3 cut(s) 31, 238, 969
BspFNI CGCG 1 cut(s) 81
BspHI TCATGA 1 cut(s) 480
BspLI GGNNCC 7 cut(s) 57, 126, 190, 289, 379, 619, 643
BspMAI CTGCAG 1 cut(s) 575
BspMI ACCTGC 1 cut(s) 629
BspPI GGATC 1 cut(s) 320
BspT107I GGYRCC 3 cut(s) 124, 377, 641
BsrI ACTGG 3 cut(s) 126, 134, 404
BssECI CCNNGG 5 cut(s) 59, 177, 613, 745, 921
BssHII GCGCGC 1 cut(s) 79
BssMI GATC 3 cut(s) 9, 228, 312
BssNAI GTATAC 1 cut(s) 928
BssNI GRCGYC 1 cut(s) 47
BssT1I CCWWGG 2 cut(s) 745, 921
Bst1107I GTATAC 1 cut(s) 928
Bst2UI CCWGG 1 cut(s) 614
Bst4CI ACNGT 3 cut(s) 442, 463, 553
Bst6I CTCTTC 1 cut(s) 195
BstACI GRCGYC 1 cut(s) 47
BstC8I GCNNGC 5 cut(s) 81, 209, 450, 457, 507
BstDEI CTNAG 5 cut(s) 39, 225, 351, 606, 977
BstDSI CCRYGG 1 cut(s) 59
BstF5I GGATG 2 cut(s) 253, 855
BstFNI CGCG 1 cut(s) 81
BstHHI GCGC 2 cut(s) 81, 83
BstKTI GATC 3 cut(s) 12, 231, 315
BstMAI GTCTC 2 cut(s) 542, 817
BstMBI GATC 3 cut(s) 9, 228, 312
BstMWI GCNNNNNNNGC 5 cut(s) 76, 89, 213, 656, 741
BstNI CCWGG 1 cut(s) 614
BstSCI CCNGG 2 cut(s) 176, 612
BstSFI CTRYAG 1 cut(s) 571
BstUI CGCG 1 cut(s) 81
BstV1I GCAGC 3 cut(s) 439, 557, 904
BstV2I GAAGAC 1 cut(s) 953
BstX2I RGATCY 1 cut(s) 312
BstYI RGATCY 1 cut(s) 312
BstZ17I GTATAC 1 cut(s) 928
BsuRI GGCC 1 cut(s) 744
BtgI CCRYGG 1 cut(s) 59
BtsCI GGATG 2 cut(s) 253, 855
BtsI GCAGTG 1 cut(s) 580
BtsIMutI CAGTG 3 cut(s) 301, 580, 977
BveI ACCTGC 1 cut(s) 629
Cac8I GCNNGC 5 cut(s) 81, 209, 450, 457, 507
CaiI CAGNNNCTG 1 cut(s) 976
CciI TCATGA 1 cut(s) 480
CfoI GCGC 2 cut(s) 81, 83
Cfr13I GGNCC 3 cut(s) 56, 188, 468
CseI GACGC 1 cut(s) 656
Csp6I GTAC 8 cut(s) 30, 36, 116, 137, 155, 391, 642, 878
CviAII CATG 2 cut(s) 481, 563
CviQI GTAC 8 cut(s) 30, 36, 116, 137, 155, 391, 642, 878
DdeI CTNAG 5 cut(s) 39, 225, 351, 606, 977
DpnI GATC 3 cut(s) 11, 230, 314
DpnII GATC 3 cut(s) 9, 228, 312
Eam1104I CTCTTC 1 cut(s) 195
EarI CTCTTC 1 cut(s) 195
Eco130I CCWWGG 2 cut(s) 745, 921
Eco47I GGWCC 3 cut(s) 56, 188, 468
Eco57I CTGAAG 2 cut(s) 525, 830
EcoRII CCWGG 1 cut(s) 612
EcoT14I CCWWGG 2 cut(s) 745, 921
EcoT22I ATGCAT 2 cut(s) 692, 908
ErhI CCWWGG 2 cut(s) 745, 921
FaeI CATG 2 cut(s) 484, 566
FaiI YATR 9 cut(s) 86, 384, 482, 564, 587, 688, 699, 870, 928
FaqI GGGAC 2 cut(s) 69, 743
FatI CATG 2 cut(s) 480, 562
FblI GTMKAC 3 cut(s) 44, 168, 927
Fnu4HI GCNGC 3 cut(s) 453, 571, 918
FokI GGATG 2 cut(s) 260, 862
Fsp4HI GCNGC 3 cut(s) 453, 571, 918
FspBI CTAG 4 cut(s) 33, 129, 275, 494
GlaI GCGC 2 cut(s) 80, 82
GluI GCNGC 3 cut(s) 453, 571, 918
GsuI CTGGAG 1 cut(s) 921
HaeIII GGCC 1 cut(s) 744
HapII CCGG 1 cut(s) 177
HgaI GACGC 1 cut(s) 656
HhaI GCGC 2 cut(s) 81, 83
Hin1I GRCGYC 1 cut(s) 47
Hin1II CATG 2 cut(s) 484, 566
Hin6I GCGC 2 cut(s) 79, 81
HinP1I GCGC 2 cut(s) 79, 81
HincII GTYRAC 3 cut(s) 45, 107, 184
HindII GTYRAC 3 cut(s) 45, 107, 184
HinfI GANTC 5 cut(s) 41, 529, 559, 595, 863
HpaII CCGG 1 cut(s) 177
HphI GGTGA 1 cut(s) 213
Hpy166II GTNNAC 6 cut(s) 45, 107, 169, 184, 668, 928
Hpy188I TCNGA 6 cut(s) 21, 228, 420, 472, 600, 792
Hpy188III TCNNGA 7 cut(s) 54, 275, 285, 337, 481, 800, 938
Hpy8I GTNNAC 6 cut(s) 45, 107, 169, 184, 668, 928
Hpy99I CGWCG 5 cut(s) 49, 52, 55, 197, 650
HpyAV CCTTC 6 cut(s) 58, 95, 425, 518, 805, 809
HpyCH4III ACNGT 3 cut(s) 442, 463, 553
HpyCH4IV ACGT 4 cut(s) 47, 195, 393, 670
HpyCH4V TGCA 6 cut(s) 459, 509, 573, 632, 690, 906
HpyF10VI GCNNNNNNNGC 5 cut(s) 76, 89, 213, 656, 741
HpyF3I CTNAG 5 cut(s) 39, 225, 351, 606, 977
HpySE526I ACGT 4 cut(s) 47, 195, 393, 670
Hsp92I GRCGYC 1 cut(s) 47
Hsp92II CATG 2 cut(s) 484, 566
HspAI GCGC 2 cut(s) 79, 81
KpnI GGTACC 1 cut(s) 645
Kzo9I GATC 3 cut(s) 9, 228, 312
LmnI GCTCC 3 cut(s) 67, 617, 677
Lsp1109I GCAGC 3 cut(s) 439, 557, 904
LweI GCATC 2 cut(s) 66, 699
MaeI CTAG 4 cut(s) 33, 129, 275, 494
MaeII ACGT 4 cut(s) 47, 195, 393, 670
MaeIII GTNAC 1 cut(s) 219
MalI GATC 3 cut(s) 11, 230, 314
MboI GATC 3 cut(s) 9, 228, 312
MboII GAAGA 5 cut(s) 212, 496, 531, 533, 958
MflI RGATCY 1 cut(s) 312
MhlI GDGCHC 1 cut(s) 301
MluCI AATT 5 cut(s) 422, 473, 579, 834, 895
MlyI GAGTC 2 cut(s) 50, 538
MmeI TCCRAC 1 cut(s) 827
Mph1103I ATGCAT 2 cut(s) 692, 908
MseI TTAA 2 cut(s) 780, 985
MslI CAYNNNNRTG 2 cut(s) 353, 911
MspI CCGG 1 cut(s) 177
MspR9I CCNGG 2 cut(s) 178, 614
Mva1269I GAATGC 1 cut(s) 809
MvaI CCWGG 1 cut(s) 614
MvnI CGCG 1 cut(s) 81
MwoI GCNNNNNNNGC 5 cut(s) 76, 89, 213, 656, 741
NciI CCSGG 1 cut(s) 178
NdeII GATC 3 cut(s) 9, 228, 312
NlaIII CATG 2 cut(s) 484, 566
NlaIV GGNNCC 7 cut(s) 57, 126, 190, 289, 379, 619, 643
NmuCI GTSAC 1 cut(s) 219
NsiI ATGCAT 2 cut(s) 692, 908
OliI CACNNNNGTG 1 cut(s) 353
PagI TCATGA 1 cut(s) 480
PauI GCGCGC 1 cut(s) 79
PcsI WCGNNNNNNNCGW 1 cut(s) 192
PctI GAATGC 1 cut(s) 809
PfeI GAWTC 3 cut(s) 559, 595, 863
PflFI GACNNNGTC 1 cut(s) 49
PkrI GCNGC 3 cut(s) 454, 572, 919
PleI GAGTC 2 cut(s) 49, 537
PpsI GAGTC 2 cut(s) 49, 537
Psp6I CCWGG 1 cut(s) 612
PspGI CCWGG 1 cut(s) 612
PspN4I GGNNCC 7 cut(s) 57, 126, 190, 289, 379, 619, 643
PspPI GGNCC 3 cut(s) 56, 188, 468
PstI CTGCAG 1 cut(s) 575
PstNI CAGNNNCTG 1 cut(s) 976
PsuI RGATCY 1 cut(s) 312
PsyI GACNNNGTC 1 cut(s) 49
PteI GCGCGC 1 cut(s) 79
RsaI GTAC 8 cut(s) 31, 37, 117, 138, 156, 392, 643, 879
RsaNI GTAC 8 cut(s) 30, 36, 116, 137, 155, 391, 642, 878
RseI CAYNNNNRTG 2 cut(s) 353, 911
SalI GTCGAC 1 cut(s) 43
SaqAI TTAA 2 cut(s) 780, 985
SatI GCNGC 3 cut(s) 453, 571, 918
Sau3AI GATC 3 cut(s) 9, 228, 312
Sau96I GGNCC 3 cut(s) 56, 188, 468
ScaI AGTACT 2 cut(s) 31, 37
SchI GAGTC 2 cut(s) 50, 538
ScrFI CCNGG 2 cut(s) 178, 614
SduI GDGCHC 1 cut(s) 301
SfaNI GCATC 2 cut(s) 66, 699
SfcI CTRYAG 1 cut(s) 571
SinI GGWCC 3 cut(s) 56, 188, 468
SmiMI CAYNNNNRTG 2 cut(s) 353, 911
SmlI CTYRAG 1 cut(s) 239
SmoI CTYRAG 1 cut(s) 239
SpeI ACTAGT 1 cut(s) 32
Sse9I AATT 5 cut(s) 422, 473, 579, 834, 895
SsiI CCGC 2 cut(s) 375, 386
SspMI CTAG 4 cut(s) 33, 129, 275, 494
StyD4I CCNGG 2 cut(s) 176, 612
StyI CCWWGG 2 cut(s) 745, 921
TaaI ACNGT 3 cut(s) 442, 463, 553
TaiI ACGT 4 cut(s) 50, 198, 396, 673
TaqI TCGA 1 cut(s) 44
TasI AATT 5 cut(s) 422, 473, 579, 834, 895
TatI WGTACW 4 cut(s) 29, 35, 115, 877
TfiI GAWTC 3 cut(s) 559, 595, 863
Tru1I TTAA 2 cut(s) 780, 985
Tru9I TTAA 2 cut(s) 780, 985
TscAI CASTG 3 cut(s) 301, 580, 977
TseFI GTSAC 1 cut(s) 219
TseI GCWGC 3 cut(s) 452, 570, 917
Tsp45I GTSAC 1 cut(s) 219
TspDTI ATGAA 4 cut(s) 469, 497, 551, 959
TspGWI ACGGA 2 cut(s) 76, 201
TspRI CASTG 3 cut(s) 301, 580, 977
Tth111I GACNNNGTC 1 cut(s) 49
VpaK11BI GGWCC 3 cut(s) 56, 188, 468
XapI RAATTY 2 cut(s) 422, 895
XbaI TCTAGA 1 cut(s) 274
XmiI GTMKAC 3 cut(s) 44, 168, 927
XspI CTAG 4 cut(s) 33, 129, 275, 494
ZraI GACGTC 1 cut(s) 48
ZrmI AGTACT 2 cut(s) 31, 37
Zsp2I ATGCAT 2 cut(s) 692, 908
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.