Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000613

Physical Location & Seq

Genomic Coordinates Reverse (-)

83389472 .. 83390763

Gene Structure 1292 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00061170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGCGTTTGAGAAAACCAATCAAGCTAGAGAAGGGGACAATCACTCTTGCTTTTCCATTCAAGGAAGGCATTATGATTGGGGTTGATTCTAGAATCACGCGGAAACAGACTATAGTTTCAGACAAGAAGCAGAAGTTTTTTGAAATATCATCCAACATATTTTGTACAATGATGGGGAGAGTTCATGTCTGGGAAAACATGGCCCTATATGTGCAGCAAAAGGTAAAGAGCGAAGGACGTCTTCGCTGTGCACCTGCAACAGTTTCATATGCAGCAGAAAAGGCGCTTGAACATTTAGAGTATGAATTCAGTGACTATGAATATATGGAGGATGAAGAGGATTTAATATTTGGCACTATCATCGCTGGATGGCAAAAAACAACGGGTTTTGAACTTTATAGTGTTAACCTGAATGGCAACCGGACTTGGAAGACAGACTGTAAAAGTTCAAGTTCAACAATACTAGGATCTGGTGCTAAATATGCTGGGCGTGTTATGGACTCAGTTAATAACTTCTACGACATGTCTAGTGAAGATGCTGCCGACTTTGCCCTAAAAGCACTTTTTATGGCAACCTTTTATGATAAGTGGTGTGGAGGGACTCTACATGTTTATCATGTGCATGAAAATGGGTATCAAGAGAAACGCAGCCTCGATGCTTTAGAAGTCTACTCGCGATATTACAACATTTACGACCTTTACACATATGAACCAATGACGTTTTTGTTGCTGTATTCTACAGATTACCAACCCATTGCTGGCGATGATCTCATAAACCTCGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005839 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0019538 GO:0019774 GO:0032991 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044464 GO:0071704 GO:1901564 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

Proteasome

Protein Analysis

261

Amino Acids

30.06

Weight (kDa)

5.48

Isoelectric Point (pI)

41.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Proteasome	PF00227	10 - 207	3.9e-23	Proteasome subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000613)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13060 AT1G13060 AT1G13060 AT3G26340
fragaria_vesca	FvH4_1g01201 FvH4_4g24020 FvH4_6g30500
malus_domestica	MD10G1030600.v1.1 MD16G1116800.v1.1
prunus_persica	Prupe.1G229300_v2.0.a1 Prupe.1G229300_v2.0.a1 Prupe.1G229300_v2.0.a1
pyrus_communis	pycom10g01980 pycom13g10110
rosa_chinensis	RchiOBHm_Chr4g0430701 RchiOBHm_Chr5g0003071
rosa_laevigata	RLG00000006954 RLG00000031090 RLG00000031094 RLG00000031099 RLG00000031107 RLG00000031108 RLG00000031111 RLG00000031116 RLG00000032188
rosa_multiflora	Rmu_sc0000131.1_g000009 Rmu_sc0000146.1_g000015 Rmu_sc0002209.1_g000027
rosa_roxburghii	Rroxscaffold_1G00061170 Rroxscaffold_1G00061240 Rroxscaffold_1G00061300 Rroxscaffold_1G00072510 Rroxscaffold_1G00072750 Rroxscaffold_1G00072760 Rroxscaffold_5G00372440 Rroxscaffold_6G00429800 Rroxscaffold_6G00429810 Rroxscaffold_6G00429820 Rroxscaffold_6G00429850
rosa_rugosa	Rorug04G0245300 Rorug04G0402100 Rorug04G0402100 Rorug04G0402100 Rorug05G0025600 Rorug05G0026200
rosa_samantha	Rh3BG233200 Rh3DG047000 Rh3DG047300 Rh3DG047400 Rh3DG047800 Rh4AG053100 Rh4AG227500 Rh4BG230300 Rh4BG309300 Rh4CG242400 Rh4DG160600 Rh4DG225800 Rh5AG024300 Rh5AG024400 Rh5AG024700 Rh5AG027100 Rh5AG119900 Rh5BG118400 Rh5CG027100 Rh5CG027300 Rh5CG027700 Rh5CG128900 Rh5DG026900 Rh5DG027000 Rh5DG027700 Rh5DG028000 Rh5DG028500
rosa_wichuraiana	Rw0G010900 Rw3G003590 Rw4G026180 Rw5G002310 Rw5G002480 Rw5G002600 Rw5G010340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	262
AatII	GACGTC	1 cut(s)	241
Acc36I	ACCTGC	1 cut(s)	262
AccI	GTMKAC	1 cut(s)	669
AccII	CGCG	2 cut(s)	100, 676
AciI	CCGC	1 cut(s)	100
AclWI	GGATC	1 cut(s)	475
AcsI	RAATTY	1 cut(s)	305
AcyI	GRCGYC	1 cut(s)	238
AfaI	GTAC	1 cut(s)	166
AfiI	CCNNNNNNNGG	1 cut(s)	758
AflIII	ACRYGT	2 cut(s)	522, 607
AgsI	TTSAA	6 cut(s)	61, 143, 290, 392, 450, 456
AluBI	AGCT	1 cut(s)	25
AluI	AGCT	1 cut(s)	25
Alw21I	GWGCWC	1 cut(s)	253
Alw44I	GTGCAC	1 cut(s)	249
AlwI	GGATC	1 cut(s)	475
Ama87I	CYCGRG	1 cut(s)	779
AoxI	GGCC	1 cut(s)	201
ApaLI	GTGCAC	1 cut(s)	249
ApeKI	GCWGC	4 cut(s)	214, 272, 539, 648
ApoI	RAATTY	1 cut(s)	305
AspLEI	GCGC	1 cut(s)	286
AspS9I	GGNCC	1 cut(s)	202
AvaI	CYCGRG	1 cut(s)	779
BaeGI	GKGCMC	1 cut(s)	253
BbsI	GAAGAC	2 cut(s)	233, 437
Bbv12I	GWGCWC	1 cut(s)	253
BbvI	GCAGC	4 cut(s)	226, 284, 526, 660
BccI	CCATC	2 cut(s)	166, 363
BcgI	CGANNNNNNTGC	2 cut(s)	343, 377
BfaI	CTAG	4 cut(s)	26, 90, 464, 528
BfmI	CTRYAG	2 cut(s)	111, 738
BfoI	RGCGCY	1 cut(s)	287
BfuAI	ACCTGC	1 cut(s)	262
BisI	GCNGC	4 cut(s)	215, 273, 540, 649
BlsI	GCNGC	4 cut(s)	216, 274, 541, 650
BmeT110I	CYCGRG	1 cut(s)	779
BmgT120I	GGNCC	1 cut(s)	202
BmsI	GCATC	2 cut(s)	526, 646
BpiI	GAAGAC	2 cut(s)	233, 437
BsaHI	GRCGYC	1 cut(s)	238
BsaJI	CCNNGG	1 cut(s)	778
BsaWI	WCCGGW	1 cut(s)	420
Bsc4I	CCNNNNNNNGG	1 cut(s)	758
Bse3DI	GCAATG	1 cut(s)	753
BseDI	CCNNGG	1 cut(s)	778
BseGI	GGATG	3 cut(s)	149, 337, 374
BseLI	CCNNNNNNNGG	1 cut(s)	758
BseMI	GCAATG	1 cut(s)	753
BseMII	CTCAG	1 cut(s)	516
BseSI	GKGCMC	1 cut(s)	253
BseXI	GCAGC	4 cut(s)	226, 284, 526, 660
BseYI	CCCAGC	1 cut(s)	485
BsgI	GTGCAG	1 cut(s)	233
Bsh1236I	CGCG	2 cut(s)	100, 676
BshFI	GGCC	1 cut(s)	203
BsiHKAI	GWGCWC	1 cut(s)	253
BsiHKCI	CYCGRG	1 cut(s)	779
BsiSI	CCGG	1 cut(s)	421
BslFI	GGGAC	2 cut(s)	49, 613
BslI	CCNNNNNNNGG	1 cut(s)	758
BsmFI	GGGAC	2 cut(s)	49, 613
BsnI	GGCC	1 cut(s)	203
BsoBI	CYCGRG	1 cut(s)	779
Bsp1286I	GDGCHC	1 cut(s)	253
Bsp1407I	TGTACA	1 cut(s)	164
Bsp143I	GATC	2 cut(s)	467, 766
Bsp68I	TCGCGA	1 cut(s)	676
BspACI	CCGC	1 cut(s)	100
BspANI	GGCC	1 cut(s)	203
BspCNI	CTCAG	1 cut(s)	515
BspFNI	CGCG	2 cut(s)	100, 676
BspMI	ACCTGC	1 cut(s)	262
BspPI	GGATC	1 cut(s)	475
BsrDI	GCAATG	1 cut(s)	753
BsrGI	TGTACA	1 cut(s)	164
BssECI	CCNNGG	1 cut(s)	778
BssMI	GATC	2 cut(s)	467, 766
BssNI	GRCGYC	1 cut(s)	238
Bst4CI	ACNGT	2 cut(s)	262, 440
Bst6I	CTCTTC	1 cut(s)	330
BstACI	GRCGYC	1 cut(s)	238
BstAUI	TGTACA	1 cut(s)	164
BstC8I	GCNNGC	1 cut(s)	760
BstDEI	CTNAG	1 cut(s)	502
BstF5I	GGATG	3 cut(s)	149, 337, 374
BstFNI	CGCG	2 cut(s)	100, 676
BstH2I	RGCGCY	1 cut(s)	287
BstHHI	GCGC	1 cut(s)	286
BstKTI	GATC	2 cut(s)	470, 769
BstMBI	GATC	2 cut(s)	467, 766
BstMWI	GCNNNNNNNGC	4 cut(s)	281, 482, 548, 557
BstNSI	RCATGY	2 cut(s)	526, 611
BstSFI	CTRYAG	2 cut(s)	111, 738
BstSLI	GKGCMC	1 cut(s)	253
BstUI	CGCG	2 cut(s)	100, 676
BstV1I	GCAGC	4 cut(s)	226, 284, 526, 660
BstV2I	GAAGAC	2 cut(s)	233, 437
BstX2I	RGATCY	1 cut(s)	467
BstYI	RGATCY	1 cut(s)	467
BsuRI	GGCC	1 cut(s)	203
BtgZI	GCGATG	2 cut(s)	346, 777
BtsCI	GGATG	3 cut(s)	149, 337, 374
BtsIMutI	CAGTG	1 cut(s)	316
BtuMI	TCGCGA	1 cut(s)	676
BveI	ACCTGC	1 cut(s)	262
Cac8I	GCNNGC	1 cut(s)	760
CfoI	GCGC	1 cut(s)	286
Cfr13I	GGNCC	1 cut(s)	202
Csp6I	GTAC	1 cut(s)	165
CviAII	CATG	6 cut(s)	185, 199, 523, 608, 617, 623
CviJI	RGCY	3 cut(s)	25, 203, 651
CviKI_1	RGCY	3 cut(s)	25, 203, 651
CviQI	GTAC	1 cut(s)	165
DdeI	CTNAG	1 cut(s)	502
DpnI	GATC	2 cut(s)	469, 768
DpnII	GATC	2 cut(s)	467, 766
Eam1104I	CTCTTC	1 cut(s)	330
EarI	CTCTTC	1 cut(s)	330
Eco88I	CYCGRG	1 cut(s)	779
EcoRI	GAATTC	1 cut(s)	305
FaeI	CATG	6 cut(s)	188, 202, 526, 611, 620, 626
FalI	AAGNNNNNCTT	2 cut(s)	225, 257
FaqI	GGGAC	2 cut(s)	49, 613
FatI	CATG	6 cut(s)	184, 198, 522, 607, 616, 622
FauNDI	CATATG	2 cut(s)	268, 706
FblI	GTMKAC	1 cut(s)	669
Fnu4HI	GCNGC	4 cut(s)	215, 273, 540, 649
FokI	GGATG	3 cut(s)	136, 344, 381
Fsp4HI	GCNGC	4 cut(s)	215, 273, 540, 649
FspBI	CTAG	4 cut(s)	26, 90, 464, 528
GlaI	GCGC	1 cut(s)	285
GluI	GCNGC	4 cut(s)	215, 273, 540, 649
GsaI	CCCAGC	1 cut(s)	489
HaeII	RGCGCY	1 cut(s)	287
HaeIII	GGCC	1 cut(s)	203
HapII	CCGG	1 cut(s)	421
HhaI	GCGC	1 cut(s)	286
Hin1I	GRCGYC	1 cut(s)	238
Hin1II	CATG	6 cut(s)	188, 202, 526, 611, 620, 626
Hin6I	GCGC	1 cut(s)	284
HinP1I	GCGC	1 cut(s)	284
HincII	GTYRAC	1 cut(s)	406
HindII	GTYRAC	1 cut(s)	406
HinfI	GANTC	4 cut(s)	86, 93, 500, 601
HpaI	GTTAAC	1 cut(s)	406
HpaII	CCGG	1 cut(s)	421
Hpy166II	GTNNAC	3 cut(s)	251, 406, 670
Hpy188I	TCNGA	1 cut(s)	121
Hpy188III	TCNNGA	3 cut(s)	90, 638, 675
Hpy8I	GTNNAC	3 cut(s)	251, 406, 670
HpyAV	CCTTC	3 cut(s)	25, 59, 227
HpyCH4III	ACNGT	2 cut(s)	262, 440
HpyCH4IV	ACGT	2 cut(s)	238, 719
HpyCH4V	TGCA	5 cut(s)	214, 251, 257, 272, 622
HpyF10VI	GCNNNNNNNGC	4 cut(s)	281, 482, 548, 557
HpyF3I	CTNAG	1 cut(s)	502
HpySE526I	ACGT	2 cut(s)	238, 719
Hsp92I	GRCGYC	1 cut(s)	238
Hsp92II	CATG	6 cut(s)	188, 202, 526, 611, 620, 626
HspAI	GCGC	1 cut(s)	284
KspAI	GTTAAC	1 cut(s)	406
Kzo9I	GATC	2 cut(s)	467, 766
LpnPI	CCDG	8 cut(s)	175, 267, 351, 422, 434, 456, 471, 744
Lsp1109I	GCAGC	4 cut(s)	226, 284, 526, 660
LweI	GCATC	2 cut(s)	526, 646
MaeI	CTAG	4 cut(s)	26, 90, 464, 528
MaeII	ACGT	2 cut(s)	238, 719
MaeIII	GTNAC	1 cut(s)	311
MalI	GATC	2 cut(s)	469, 768
MboI	GATC	2 cut(s)	467, 766
MboII	GAAGA	4 cut(s)	233, 347, 442, 545
MflI	RGATCY	1 cut(s)	467
MhlI	GDGCHC	1 cut(s)	253
MluCI	AATT	1 cut(s)	305
MlyI	GAGTC	2 cut(s)	494, 595
MmeI	TCCRAC	1 cut(s)	177
MnlI	CCTC	4 cut(s)	322, 331, 590, 662
MseI	TTAA	3 cut(s)	344, 405, 507
MslI	CAYNNNNRTG	2 cut(s)	621, 627
MspI	CCGG	1 cut(s)	421
MvnI	CGCG	2 cut(s)	100, 676
MwoI	GCNNNNNNNGC	4 cut(s)	281, 482, 548, 557
NdeI	CATATG	2 cut(s)	268, 706
NdeII	GATC	2 cut(s)	467, 766
NlaIII	CATG	6 cut(s)	188, 202, 526, 611, 620, 626
NmuCI	GTSAC	1 cut(s)	311
NruI	TCGCGA	1 cut(s)	676
NspI	RCATGY	2 cut(s)	526, 611
PaqCI	CACCTGC	1 cut(s)	262
PciI	ACATGT	2 cut(s)	522, 607
PfeI	GAWTC	2 cut(s)	86, 93
PkrI	GCNGC	4 cut(s)	216, 274, 541, 650
PleI	GAGTC	2 cut(s)	494, 595
PpsI	GAGTC	2 cut(s)	494, 595
PscI	ACATGT	2 cut(s)	522, 607
PspFI	CCCAGC	1 cut(s)	485
PspPI	GGNCC	1 cut(s)	202
PsuI	RGATCY	1 cut(s)	467
RruI	TCGCGA	1 cut(s)	676
RsaI	GTAC	1 cut(s)	166
RsaNI	GTAC	1 cut(s)	165
RseI	CAYNNNNRTG	2 cut(s)	621, 627
SaqAI	TTAA	3 cut(s)	344, 405, 507
SatI	GCNGC	4 cut(s)	215, 273, 540, 649
Sau3AI	GATC	2 cut(s)	467, 766
Sau96I	GGNCC	1 cut(s)	202
SchI	GAGTC	2 cut(s)	494, 595
SduI	GDGCHC	1 cut(s)	253
SetI	ASST	9 cut(s)	27, 225, 241, 256, 411, 578, 699, 722, 780
SfaNI	GCATC	2 cut(s)	526, 646
SfcI	CTRYAG	2 cut(s)	111, 738
SmiMI	CAYNNNNRTG	2 cut(s)	621, 627
Sse9I	AATT	1 cut(s)	305
SsiI	CCGC	1 cut(s)	100
SspI	AATATT	1 cut(s)	348
SspMI	CTAG	4 cut(s)	26, 90, 464, 528
TaaI	ACNGT	2 cut(s)	262, 440
TaiI	ACGT	2 cut(s)	241, 722
TaqI	TCGA	1 cut(s)	654
TasI	AATT	1 cut(s)	305
TatI	WGTACW	1 cut(s)	164
TfiI	GAWTC	2 cut(s)	86, 93
Tru1I	TTAA	3 cut(s)	344, 405, 507
Tru9I	TTAA	3 cut(s)	344, 405, 507
TscAI	CASTG	1 cut(s)	316
TseFI	GTSAC	1 cut(s)	311
TseI	GCWGC	4 cut(s)	214, 272, 539, 648
Tsp45I	GTSAC	1 cut(s)	311
TspDTI	ATGAA	7 cut(s)	173, 255, 318, 333, 348, 639, 723
TspRI	CASTG	1 cut(s)	316
VneI	GTGCAC	1 cut(s)	249
XapI	RAATTY	1 cut(s)	305
XbaI	TCTAGA	1 cut(s)	89
XceI	RCATGY	2 cut(s)	526, 611
XcmI	CCANNNNNNNNNTGG	1 cut(s)	755
XmiI	GTMKAC	1 cut(s)	669
XspI	CTAG	4 cut(s)	26, 90, 464, 528
ZraI	GACGTC	1 cut(s)	239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.