FvH4_1g01201

Proteasome subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000613
Physical Location & Seq
Reverse (-)
609561 .. 611296
1736 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g01201.t1

Sequence Viewer

Length: 1110 bp
ATGAAGTTCTACAAGGGGACAACCACTCTTGCCTTTAAATACAAGCATGGCATTGCTATTGCCGCTGAATCCAGACTTACAACCGTGGAGATTAAAGGATTATATGCTACCCTAAAAGCTATATTAAAAGATGAGGAGACTAAAGTTTTACCATTGAACTCCGAGAAAAACGTAGTATGTACACTTACGGGGAATTTTGAATATTGGTATAAGATGTACAATGATATAGCGACGAAGGCGCCTGCACCTATATCATCAGCTGAAGATGCTGCGGAAAAAGCATACACGCATATGAAAGAAATAAGCCACGAGGATTTGGAAGATTACAAGCAGAACTATCGTCAAGAGTTGCAGTTTGGAACCATAATTGCCGGATGCAAACAAGGTCTTCAACTACATTGCTTGAGACTAGACGAGGAAAATAATGTTGCAAAACATGAGTTAAATGTTGGAGCACTAGGATCTGGTGCTAGATATGCTATGTGGGTTCTGCTGGACGGTCACCCTTTTGATTCCTATGGTGAAACCAAAGACTTAACAGAGCAAGAAGCTATTGACTTAGCCATGAAAGCTGCATTCTGTGCAACCGTGTTTGATCCATTTAGTGGTGGATATATTAGGGTATATCTCATGGATGAAACAAACGAGGTCGGATGCCGTGAAGTCGCATGTGAAAACCCGTTGGATGTTTACTACGCAAATTACAATCTCTACGACATGGATGAATGCACGATTTTCTTGCTGTACTCTACAAAAATCAAACCATATTTTGCGGAAGATGAGCTCAATGACCTCATGGGCGCGCTCTGGCCAACATGGGAAAACAAGAAGGATCATATCTATGCAAACCATTTGGTAGCAATGAAACGAGACTTCTATTTCCATCGAATCGTGATGAGCTCAAGAGAAGTGGCGAAAAAGGCTTATGATCTTATCAACAGAGAATTAGCTCCCCAGCGTGATCCTGTGGCTCTAGGAGGAGAGTTTCTAGCTTGCGAAATAGAGTTGGACCCTGATGATTATATCACTATTTATGTTGAGAAAAGCTCCAAGAATTTGTTGCAAATCATACGCGATTTAGAAACTCCAGACAATTTAGACTACTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000226 GO:0000502 GO:0002376 GO:0003674 GO:0003824 GO:0004175 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005813 GO:0005815 GO:0005829 GO:0005839 GO:0005856 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007098 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010498 GO:0015630 GO:0016043 GO:0016579 GO:0016787 GO:0019221 GO:0019222 GO:0019538 GO:0019774 GO:0019882 GO:0019941 GO:0022402 GO:0023052 GO:0030154 GO:0030162 GO:0030163 GO:0031023 GO:0031974 GO:0031981 GO:0032502 GO:0032991 GO:0034097 GO:0034340 GO:0036211 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043632 GO:0043687 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0045444 GO:0048869 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051246 GO:0051336 GO:0051603 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0060337 GO:0065007 GO:0065009 GO:0070011 GO:0070013 GO:0070646 GO:0070647 GO:0070887 GO:0071310 GO:0071345 GO:0071357 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369 GO:1990111
KEGG Pathways
Metabolic & Signaling
ko03050 map03050
Pfam Domains
Protein Families
Proteasome

Protein Analysis

370

Amino Acids

42.22

Weight (kDa)

4.87

Isoelectric Point (pI)

42.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Proteasome PF00227 5 - 209 2.1e-09 Proteasome subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 238
AccB7I CCANNNNNTGG 1 cut(s) 605
AccII CGCG 2 cut(s) 803, 1074
AciI CCGC 3 cut(s) 63, 272, 773
AclWI GGATC 4 cut(s) 469, 590, 840, 956
AcoI YGGCCR 1 cut(s) 809
AcsI RAATTY 2 cut(s) 193, 1054
AcuI CTGAAG 1 cut(s) 282
AcyI GRCGYC 1 cut(s) 239
AfaI GTAC 3 cut(s) 181, 218, 746
AfiI CCNNNNNNNGG 1 cut(s) 605
AgsI TTSAA 3 cut(s) 157, 200, 392
AluBI AGCT 9 cut(s) 119, 260, 551, 572, 784, 900, 950, 992, 1047
AluI AGCT 9 cut(s) 119, 260, 551, 572, 784, 900, 950, 992, 1047
Alw21I GWGCWC 3 cut(s) 457, 786, 902
Alw26I GTCTC 3 cut(s) 131, 400, 864
AlwI GGATC 4 cut(s) 469, 590, 840, 956
AoxI GGCC 1 cut(s) 809
ApeKI GCWGC 2 cut(s) 269, 572
ApoI RAATTY 2 cut(s) 193, 1054
AspLEI GCGC 3 cut(s) 241, 803, 805
AspS9I GGNCC 1 cut(s) 1009
AsuHPI GGTGA 2 cut(s) 494, 533
AvaII GGWCC 1 cut(s) 1009
BalI TGGCCA 1 cut(s) 811
BanI GGYRCC 1 cut(s) 238
BanII GRGCYC 2 cut(s) 786, 902
BauI CACGAG 1 cut(s) 308
BbsI GAAGAC 1 cut(s) 380
Bbv12I GWGCWC 3 cut(s) 457, 786, 902
BbvI GCAGC 2 cut(s) 256, 559
BccI CCATC 1 cut(s) 891
BceAI ACGGC 1 cut(s) 642
BcgI CGANNNNNNTGC 4 cut(s) 320, 354, 721, 755
BcoDI GTCTC 3 cut(s) 131, 400, 864
BfaI CTAG 6 cut(s) 410, 458, 471, 974, 989, 1108
BfoI RGCGCY 1 cut(s) 242
BisI GCNGC 3 cut(s) 63, 270, 573
BlsI GCNGC 3 cut(s) 64, 271, 574
Bme18I GGWCC 1 cut(s) 1009
BmgT120I GGNCC 1 cut(s) 1009
BmiI GGNNCC 3 cut(s) 240, 361, 1011
BmsI GCATC 3 cut(s) 256, 365, 644
BpiI GAAGAC 1 cut(s) 380
BplI GAGNNNNNCTC 2 cut(s) 1031, 1063
BpmI CTGGAG 1 cut(s) 1071
BpuEI CTTGAG 2 cut(s) 424, 886
BsaHI GRCGYC 1 cut(s) 239
BsaJI CCNNGG 1 cut(s) 84
Bsc4I CCNNNNNNNGG 1 cut(s) 605
Bse3DI GCAATG 3 cut(s) 51, 397, 867
BseDI CCNNGG 1 cut(s) 84
BseGI GGATG 5 cut(s) 380, 640, 659, 691, 727
BseLI CCNNNNNNNGG 1 cut(s) 605
BseMI GCAATG 3 cut(s) 51, 397, 867
BsePI GCGCGC 1 cut(s) 801
BseRI GAGGAG 2 cut(s) 149, 993
BseXI GCAGC 2 cut(s) 256, 559
BseYI CCCAGC 1 cut(s) 954
BsgI GTGCAG 1 cut(s) 228
Bsh1236I CGCG 2 cut(s) 803, 1074
BshFI GGCC 1 cut(s) 811
BshNI GGYRCC 1 cut(s) 238
BsiHKAI GWGCWC 3 cut(s) 457, 786, 902
BsiSI CCGG 1 cut(s) 372
BslFI GGGAC 1 cut(s) 31
BslI CCNNNNNNNGG 1 cut(s) 605
BsmAI GTCTC 3 cut(s) 131, 400, 864
BsmFI GGGAC 1 cut(s) 31
BsmI GAATGC 2 cut(s) 575, 731
BsnI GGCC 1 cut(s) 811
Bsp1286I GDGCHC 3 cut(s) 457, 786, 902
Bsp1407I TGTACA 2 cut(s) 179, 216
Bsp143I GATC 5 cut(s) 461, 595, 832, 928, 961
BspACI CCGC 3 cut(s) 63, 272, 773
BspANI GGCC 1 cut(s) 811
BspFNI CGCG 2 cut(s) 803, 1074
BspLI GGNNCC 3 cut(s) 240, 361, 1011
BspPI GGATC 4 cut(s) 469, 590, 840, 956
BspT107I GGYRCC 1 cut(s) 238
BsrDI GCAATG 3 cut(s) 51, 397, 867
BsrGI TGTACA 2 cut(s) 179, 216
BssECI CCNNGG 1 cut(s) 84
BssHII GCGCGC 1 cut(s) 801
BssMI GATC 5 cut(s) 461, 595, 832, 928, 961
BssNI GRCGYC 1 cut(s) 239
BssSI CACGAG 1 cut(s) 308
Bst2BI CACGAG 1 cut(s) 308
Bst4CI ACNGT 3 cut(s) 85, 500, 589
BstACI GRCGYC 1 cut(s) 239
BstAPI GCANNNNNTGC 1 cut(s) 581
BstAUI TGTACA 2 cut(s) 179, 216
BstC8I GCNNGC 3 cut(s) 243, 803, 994
BstDEI CTNAG 1 cut(s) 559
BstDSI CCRYGG 1 cut(s) 84
BstEII GGTNACC 1 cut(s) 500
BstF5I GGATG 5 cut(s) 380, 640, 659, 691, 727
BstFNI CGCG 2 cut(s) 803, 1074
BstH2I RGCGCY 1 cut(s) 242
BstHHI GCGC 3 cut(s) 241, 803, 805
BstKTI GATC 5 cut(s) 464, 598, 835, 931, 964
BstMAI GTCTC 3 cut(s) 131, 400, 864
BstMBI GATC 5 cut(s) 461, 595, 832, 928, 961
BstMWI GCNNNNNNNGC 8 cut(s) 62, 236, 266, 278, 476, 569, 581, 920
BstNSI RCATGY 1 cut(s) 672
BstPI GGTNACC 1 cut(s) 500
BstUI CGCG 2 cut(s) 803, 1074
BstV1I GCAGC 2 cut(s) 256, 559
BstV2I GAAGAC 1 cut(s) 380
BstX2I RGATCY 1 cut(s) 461
BstYI RGATCY 1 cut(s) 461
BsuRI GGCC 1 cut(s) 811
BtgI CCRYGG 1 cut(s) 84
BtsCI GGATG 5 cut(s) 380, 640, 659, 691, 727
Cac8I GCNNGC 3 cut(s) 243, 803, 994
CfoI GCGC 3 cut(s) 241, 803, 805
Cfr13I GGNCC 1 cut(s) 1009
Csp6I GTAC 3 cut(s) 180, 217, 745
CspCI CAANNNNNGTGG 2 cut(s) 891, 926
CviAII CATG 8 cut(s) 47, 437, 565, 631, 669, 718, 796, 816
CviQI GTAC 3 cut(s) 180, 217, 745
DdeI CTNAG 1 cut(s) 559
DinI GGCGCC 1 cut(s) 240
DpnI GATC 5 cut(s) 463, 597, 834, 930, 963
DpnII GATC 5 cut(s) 461, 595, 832, 928, 961
DraI TTTAAA 1 cut(s) 37
EaeI YGGCCR 1 cut(s) 809
Ecl136II GAGCTC 2 cut(s) 784, 900
Eco24I GRGCYC 2 cut(s) 786, 902
Eco47I GGWCC 1 cut(s) 1009
Eco53kI GAGCTC 2 cut(s) 784, 900
Eco57I CTGAAG 1 cut(s) 282
Eco91I GGTNACC 1 cut(s) 500
EcoICRI GAGCTC 2 cut(s) 784, 900
EcoO65I GGTNACC 1 cut(s) 500
EcoT38I GRGCYC 2 cut(s) 786, 902
EgeI GGCGCC 1 cut(s) 240
EheI GGCGCC 1 cut(s) 240
FaeI CATG 8 cut(s) 50, 440, 568, 634, 672, 721, 799, 819
FaqI GGGAC 1 cut(s) 31
FatI CATG 8 cut(s) 46, 436, 564, 630, 668, 717, 795, 815
FauNDI CATATG 1 cut(s) 291
Fnu4HI GCNGC 3 cut(s) 63, 270, 573
FokI GGATG 5 cut(s) 387, 647, 666, 698, 734
FriOI GRGCYC 2 cut(s) 786, 902
Fsp4HI GCNGC 3 cut(s) 63, 270, 573
FspBI CTAG 6 cut(s) 410, 458, 471, 974, 989, 1108
GlaI GCGC 3 cut(s) 240, 802, 804
GluI GCNGC 3 cut(s) 63, 270, 573
GsaI CCCAGC 1 cut(s) 958
GsuI CTGGAG 1 cut(s) 1071
HaeII RGCGCY 1 cut(s) 242
HaeIII GGCC 1 cut(s) 811
HapII CCGG 1 cut(s) 372
HhaI GCGC 3 cut(s) 241, 803, 805
Hin1I GRCGYC 1 cut(s) 239
Hin1II CATG 8 cut(s) 50, 440, 568, 634, 672, 721, 799, 819
Hin6I GCGC 3 cut(s) 239, 801, 803
HinP1I GCGC 3 cut(s) 239, 801, 803
HinfI GANTC 3 cut(s) 68, 512, 888
HpaII CCGG 1 cut(s) 372
HphI GGTGA 2 cut(s) 494, 533
Hpy166II GTNNAC 2 cut(s) 182, 691
Hpy188I TCNGA 2 cut(s) 163, 653
Hpy188III TCNNGA 5 cut(s) 72, 344, 892, 903, 1088
Hpy8I GTNNAC 2 cut(s) 182, 691
Hpy99I CGWCG 1 cut(s) 235
HpyAV CCTTC 2 cut(s) 229, 823
HpyCH4III ACNGT 3 cut(s) 85, 500, 589
HpyCH4IV ACGT 1 cut(s) 171
HpyCH4V TGCA 9 cut(s) 245, 352, 378, 431, 575, 584, 729, 845, 1063
HpyF10VI GCNNNNNNNGC 8 cut(s) 62, 236, 266, 278, 476, 569, 581, 920
HpyF3I CTNAG 1 cut(s) 559
HpySE526I ACGT 1 cut(s) 171
Hsp92I GRCGYC 1 cut(s) 239
Hsp92II CATG 8 cut(s) 50, 440, 568, 634, 672, 721, 799, 819
HspAI GCGC 3 cut(s) 239, 801, 803
KasI GGCGCC 1 cut(s) 238
Kzo9I GATC 5 cut(s) 461, 595, 832, 928, 961
LmnI GCTCC 3 cut(s) 452, 955, 1052
Lsp1109I GCAGC 2 cut(s) 256, 559
LweI GCATC 3 cut(s) 256, 365, 644
MaeI CTAG 6 cut(s) 410, 458, 471, 974, 989, 1108
MaeII ACGT 1 cut(s) 171
MaeIII GTNAC 1 cut(s) 500
MalI GATC 5 cut(s) 463, 597, 834, 930, 963
MboI GATC 5 cut(s) 461, 595, 832, 928, 961
MboII GAAGA 4 cut(s) 275, 332, 380, 788
MflI RGATCY 1 cut(s) 461
MhlI GDGCHC 3 cut(s) 457, 786, 902
MlsI TGGCCA 1 cut(s) 811
MluCI AATT 6 cut(s) 193, 366, 700, 944, 1054, 1093
MluNI TGGCCA 1 cut(s) 811
Mly113I GGCGCC 1 cut(s) 239
MmeI TCCRAC 4 cut(s) 430, 631, 663, 987
MnlI CCTC 6 cut(s) 127, 304, 409, 640, 803, 971
Mox20I TGGCCA 1 cut(s) 811
MscI TGGCCA 1 cut(s) 811
MseI TTAA 5 cut(s) 36, 93, 125, 443, 536
MslI CAYNNNNRTG 2 cut(s) 290, 840
Msp20I TGGCCA 1 cut(s) 811
MspA1I CMGCKG 2 cut(s) 65, 260
MspI CCGG 1 cut(s) 372
Mva1269I GAATGC 2 cut(s) 575, 731
MvnI CGCG 2 cut(s) 803, 1074
MwoI GCNNNNNNNGC 8 cut(s) 62, 236, 266, 278, 476, 569, 581, 920
NarI GGCGCC 1 cut(s) 239
NdeI CATATG 1 cut(s) 291
NdeII GATC 5 cut(s) 461, 595, 832, 928, 961
NlaIII CATG 8 cut(s) 50, 440, 568, 634, 672, 721, 799, 819
NlaIV GGNNCC 3 cut(s) 240, 361, 1011
NmuCI GTSAC 1 cut(s) 500
NspI RCATGY 1 cut(s) 672
PauI GCGCGC 1 cut(s) 801
PctI GAATGC 2 cut(s) 575, 731
PfeI GAWTC 3 cut(s) 68, 512, 888
PflMI CCANNNNNTGG 1 cut(s) 605
PkrI GCNGC 3 cut(s) 64, 271, 574
PluTI GGCGCC 1 cut(s) 242
Psp124BI GAGCTC 2 cut(s) 786, 902
PspEI GGTNACC 1 cut(s) 500
PspFI CCCAGC 1 cut(s) 954
PspN4I GGNNCC 3 cut(s) 240, 361, 1011
PspPI GGNCC 1 cut(s) 1009
PsuI RGATCY 1 cut(s) 461
PteI GCGCGC 1 cut(s) 801
PvuII CAGCTG 1 cut(s) 260
RsaI GTAC 3 cut(s) 181, 218, 746
RsaNI GTAC 3 cut(s) 180, 217, 745
RseI CAYNNNNRTG 2 cut(s) 290, 840
SacI GAGCTC 2 cut(s) 786, 902
SaqAI TTAA 5 cut(s) 36, 93, 125, 443, 536
SatI GCNGC 3 cut(s) 63, 270, 573
Sau3AI GATC 5 cut(s) 461, 595, 832, 928, 961
Sau96I GGNCC 1 cut(s) 1009
SduI GDGCHC 3 cut(s) 457, 786, 902
SfaNI GCATC 3 cut(s) 256, 365, 644
SfoI GGCGCC 1 cut(s) 240
SinI GGWCC 1 cut(s) 1009
SmiMI CAYNNNNRTG 2 cut(s) 290, 840
SmlI CTYRAG 2 cut(s) 403, 901
SmoI CTYRAG 2 cut(s) 403, 901
Sse9I AATT 6 cut(s) 193, 366, 700, 944, 1054, 1093
SsiI CCGC 3 cut(s) 63, 272, 773
SspDI GGCGCC 1 cut(s) 238
SspI AATATT 1 cut(s) 203
SspMI CTAG 6 cut(s) 410, 458, 471, 974, 989, 1108
SstI GAGCTC 2 cut(s) 786, 902
TaaI ACNGT 3 cut(s) 85, 500, 589
TaiI ACGT 1 cut(s) 174
TaqI TCGA 1 cut(s) 886
TasI AATT 6 cut(s) 193, 366, 700, 944, 1054, 1093
TatI WGTACW 3 cut(s) 179, 216, 744
TauI GCSGC 1 cut(s) 65
TfiI GAWTC 3 cut(s) 68, 512, 888
Tru1I TTAA 5 cut(s) 36, 93, 125, 443, 536
Tru9I TTAA 5 cut(s) 36, 93, 125, 443, 536
TseFI GTSAC 1 cut(s) 500
TseI GCWGC 2 cut(s) 269, 572
Tsp45I GTSAC 1 cut(s) 500
TspDTI ATGAA 6 cut(s) 17, 308, 581, 651, 738, 878
Van91I CCANNNNNTGG 1 cut(s) 605
VpaK11BI GGWCC 1 cut(s) 1009
XapI RAATTY 2 cut(s) 193, 1054
XceI RCATGY 1 cut(s) 672
XspI CTAG 6 cut(s) 410, 458, 471, 974, 989, 1108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.