Rh5CG027100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000613
Physical Location & Seq
Forward (+)
1683136 .. 1683758
623 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG027100.1

Sequence Viewer

Length: 447 bp
ATGTCTCGAATATCTCCTAAAATAATTTGCTTATTTGTGGGGCGACGTAGTGACTGTCGACTGTTGCGCATTCATATACTAAAGAAGTTTCCGTGCTGGGATGAATATGCAGGCAATGAACCTAGAGTTCCAGATGTAGCAGAAACAATTTATAAGTATCTAAATGGTCTTCGTGGCGAGAATAAAAGGTTTGGAATCCTCATCGCGGGATGGGATGCAGAGGGTCACGATCAAATTTATTGTCTCTTTATTAGAGATGATGTTGTTGTGAAACGAAAAGTAACTTCCCCATCATTCGGAGTACTAGGATCTGGGGCTGTATATGCTGCTACTAGTCTTAAAAGTGACAACCGGTGGTATGTACTTCTACGTACACGCTCTAATTTCTCATTTACTGTTTATACAACAATAACATTTGCATTTGATGGTTTCGTACTACTAATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

148

Amino Acids

16.94

Weight (kDa)

9.41

Isoelectric Point (pI)

53.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 153
Acc16I TGCGCA 1 cut(s) 68
AccI GTMKAC 1 cut(s) 58
AccII CGCG 1 cut(s) 206
AciI CCGC 1 cut(s) 206
AclWI GGATC 1 cut(s) 316
AcsI RAATTY 1 cut(s) 234
AfaI GTAC 4 cut(s) 303, 363, 373, 435
AfiI CCNNNNNNNGG 2 cut(s) 205, 296
AgeI ACCGGT 1 cut(s) 351
AhlI ACTAGT 1 cut(s) 332
Alw26I GTCTC 2 cut(s) 9, 248
AlwI GGATC 1 cut(s) 316
ApeKI GCWGC 1 cut(s) 326
ApoI RAATTY 1 cut(s) 234
ArsI GACNNNNNNTTYG 2 cut(s) 226, 258
AsiGI ACCGGT 1 cut(s) 351
AspLEI GCGC 1 cut(s) 69
BbsI GAAGAC 1 cut(s) 161
BbvI GCAGC 1 cut(s) 313
BccI CCATC 3 cut(s) 204, 298, 419
BcoDI GTCTC 2 cut(s) 9, 248
BcuI ACTAGT 1 cut(s) 332
BfaI CTAG 3 cut(s) 123, 305, 333
BisI GCNGC 1 cut(s) 327
BlsI GCNGC 1 cut(s) 328
BmcAI AGTACT 1 cut(s) 303
BmsI GCATC 1 cut(s) 205
BpiI GAAGAC 1 cut(s) 161
BsaAI YACGTR 1 cut(s) 371
BsaWI WCCGGW 1 cut(s) 351
Bsc4I CCNNNNNNNGG 2 cut(s) 205, 296
Bse118I RCCGGY 1 cut(s) 351
Bse3DI GCAATG 1 cut(s) 121
BseGI GGATG 3 cut(s) 106, 215, 220
BseLI CCNNNNNNNGG 2 cut(s) 205, 296
BseMI GCAATG 1 cut(s) 121
BseXI GCAGC 1 cut(s) 313
BseYI CCCAGC 1 cut(s) 96
Bsh1236I CGCG 1 cut(s) 206
BshTI ACCGGT 1 cut(s) 351
BsiSI CCGG 1 cut(s) 352
BslI CCNNNNNNNGG 2 cut(s) 205, 296
BsmAI GTCTC 2 cut(s) 9, 248
BsmI GAATGC 1 cut(s) 69
Bsp143I GATC 2 cut(s) 229, 308
BspACI CCGC 1 cut(s) 206
BspFNI CGCG 1 cut(s) 206
BspPI GGATC 1 cut(s) 316
BsrDI GCAATG 1 cut(s) 121
BsrFI RCCGGY 1 cut(s) 351
BssAI RCCGGY 1 cut(s) 351
BssMI GATC 2 cut(s) 229, 308
Bst4CI ACNGT 3 cut(s) 56, 63, 397
BstBAI YACGTR 1 cut(s) 371
BstC8I GCNNGC 1 cut(s) 112
BstF5I GGATG 3 cut(s) 106, 215, 220
BstFNI CGCG 1 cut(s) 206
BstHHI GCGC 1 cut(s) 69
BstKTI GATC 2 cut(s) 232, 311
BstMAI GTCTC 2 cut(s) 9, 248
BstMBI GATC 2 cut(s) 229, 308
BstMWI GCNNNNNNNGC 1 cut(s) 323
BstSNI TACGTA 1 cut(s) 371
BstUI CGCG 1 cut(s) 206
BstV1I GCAGC 1 cut(s) 313
BstV2I GAAGAC 1 cut(s) 161
BstX2I RGATCY 1 cut(s) 308
BstYI RGATCY 1 cut(s) 308
BtgZI GCGATG 1 cut(s) 187
BtsCI GGATG 3 cut(s) 106, 215, 220
Cac8I GCNNGC 1 cut(s) 112
CfoI GCGC 1 cut(s) 69
Cfr10I RCCGGY 1 cut(s) 351
Csp6I GTAC 4 cut(s) 302, 362, 372, 434
CspAI ACCGGT 1 cut(s) 351
CviJI RGCY 1 cut(s) 317
CviKI_1 RGCY 1 cut(s) 317
CviQI GTAC 4 cut(s) 302, 362, 372, 434
DpnI GATC 2 cut(s) 231, 310
DpnII GATC 2 cut(s) 229, 308
Eco105I TACGTA 1 cut(s) 371
FaiI YATR 8 cut(s) 75, 77, 108, 153, 322, 324, 360, 402
FauI CCCGC 1 cut(s) 199
FblI GTMKAC 1 cut(s) 58
Fnu4HI GCNGC 1 cut(s) 327
FokI GGATG 3 cut(s) 113, 222, 227
Fsp4HI GCNGC 1 cut(s) 327
FspBI CTAG 3 cut(s) 123, 305, 333
FspI TGCGCA 1 cut(s) 68
GlaI GCGC 1 cut(s) 68
GluI GCNGC 1 cut(s) 327
GsaI CCCAGC 1 cut(s) 100
HapII CCGG 1 cut(s) 352
HhaI GCGC 1 cut(s) 69
Hin6I GCGC 1 cut(s) 67
HinP1I GCGC 1 cut(s) 67
HincII GTYRAC 1 cut(s) 59
HindII GTYRAC 1 cut(s) 59
HinfI GANTC 1 cut(s) 195
HpaII CCGG 1 cut(s) 352
Hpy166II GTNNAC 2 cut(s) 59, 374
Hpy188I TCNGA 2 cut(s) 299, 446
Hpy188III TCNNGA 3 cut(s) 6, 131, 227
Hpy8I GTNNAC 2 cut(s) 59, 374
Hpy99I CGWCG 1 cut(s) 48
HpyCH4III ACNGT 3 cut(s) 56, 63, 397
HpyCH4IV ACGT 2 cut(s) 46, 370
HpyCH4V TGCA 3 cut(s) 110, 218, 419
HpyF10VI GCNNNNNNNGC 1 cut(s) 323
HpySE526I ACGT 2 cut(s) 46, 370
HspAI GCGC 1 cut(s) 67
Kzo9I GATC 2 cut(s) 229, 308
LpnPI CCDG 5 cut(s) 82, 96, 144, 297, 365
Lsp1109I GCAGC 1 cut(s) 313
LweI GCATC 1 cut(s) 205
MaeI CTAG 3 cut(s) 123, 305, 333
MaeII ACGT 2 cut(s) 46, 370
MaeIII GTNAC 4 cut(s) 50, 224, 280, 344
MalI GATC 2 cut(s) 231, 310
MboI GATC 2 cut(s) 229, 308
MboII GAAGA 1 cut(s) 161
MflI RGATCY 1 cut(s) 308
MluCI AATT 4 cut(s) 24, 147, 234, 382
MnlI CCTC 2 cut(s) 209, 214
MseI TTAA 1 cut(s) 339
MspI CCGG 1 cut(s) 352
Mva1269I GAATGC 1 cut(s) 69
MvnI CGCG 1 cut(s) 206
MwoI GCNNNNNNNGC 1 cut(s) 323
NdeII GATC 2 cut(s) 229, 308
NmuCI GTSAC 3 cut(s) 50, 224, 344
NsbI TGCGCA 1 cut(s) 68
PctI GAATGC 1 cut(s) 69
PfeI GAWTC 1 cut(s) 195
PinAI ACCGGT 1 cut(s) 351
PkrI GCNGC 1 cut(s) 328
Ppu21I YACGTR 1 cut(s) 371
PsiI TTATAA 1 cut(s) 153
PspFI CCCAGC 1 cut(s) 96
PsuI RGATCY 1 cut(s) 308
RsaI GTAC 4 cut(s) 303, 363, 373, 435
RsaNI GTAC 4 cut(s) 302, 362, 372, 434
SalI GTCGAC 1 cut(s) 57
SaqAI TTAA 1 cut(s) 339
SatI GCNGC 1 cut(s) 327
Sau3AI GATC 2 cut(s) 229, 308
ScaI AGTACT 1 cut(s) 303
SetI ASST 4 cut(s) 49, 124, 191, 373
SfaNI GCATC 1 cut(s) 205
SnaBI TACGTA 1 cut(s) 371
SpeI ACTAGT 1 cut(s) 332
Sse9I AATT 4 cut(s) 24, 147, 234, 382
SsiI CCGC 1 cut(s) 206
SspMI CTAG 3 cut(s) 123, 305, 333
TaaI ACNGT 3 cut(s) 56, 63, 397
TaiI ACGT 2 cut(s) 49, 373
TaqI TCGA 2 cut(s) 7, 58
TasI AATT 4 cut(s) 24, 147, 234, 382
TatI WGTACW 2 cut(s) 301, 361
TfiI GAWTC 1 cut(s) 195
Tru1I TTAA 1 cut(s) 339
Tru9I TTAA 1 cut(s) 339
TseFI GTSAC 3 cut(s) 50, 224, 344
TseI GCWGC 1 cut(s) 326
Tsp45I GTSAC 3 cut(s) 50, 224, 344
TspDTI ATGAA 3 cut(s) 62, 117, 132
TspGWI ACGGA 1 cut(s) 81
XapI RAATTY 1 cut(s) 234
XmiI GTMKAC 1 cut(s) 58
XspI CTAG 3 cut(s) 123, 305, 333
ZrmI AGTACT 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.