Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0000613

Physical Location & Seq

Genomic Coordinates Forward (+)

8282291 .. 8285782

Gene Structure 3492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1116800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGCAGCATTCCTACCAGTATCTTTTTAGCTCGATCTCACTATCCCTTCTTCCTCTTTGGTCTTCGTCTGCACGATCATCAACCTCTCAAGCTATGAGGCTTGACACTAGCGGTCTTGAGTCACGCGCGCCGCTGTTCGGCGAGAGCAGTGGGTTTCTTGACGGCGTTTCGGCTCCTCCGTCGTTCGAGGTTCCGACGACGAATGATTACGAGATGGATCTAAGTATGGCTATGGGGTACTTAGATTTTGATGGATTTCAGAAGGAAGCTATTCAGATGGTGAAGCCGGCGAAGGGGACAACCACACTTGCGTTCATCTTCAAGGATGGAGTCATGGTTGCTGCTGATTCTCGGGCCAGCATGGGCGGATATATCTCATCACAATCTGTGAAGAAGATTATTGAAATCAATCCTTACATGCTTGGTACAATGGCTGGAGGAGCTGCTGACTGCCAGTTTTGGCATAGGAATCTGGGGATTAAGTGTCGGTTGCATGAGTTGGCAAATAAGCGGAGGATTTCAGTTACAGGAGCATCAAAGCTGCTGGCAAACATTCTTTACTCTTATCGTGGTATGGGTCTCTCAGTTGGGACCATGATCGCAGGCTGGGACGAAACGGGTCCTGGATTGTATTATGTCGACAGTGAGGGAGGCCGTTTGAAAGGAATGAGGTTTTCTGTTGGTTCGGGCTCGCCTTATGCTTATGGTGTTCTGGATGATGGGTACCGATATGATATGTCTGTAGAAGAAGCTGCTGAGTTGGCTAGAAGAGCAATATATCATGCAACATTCCGTGATGGAGCCAGCGGCGGTGTTGCGAGTGTATATCATGTGGGAGCAAATGGATGGAAGAAGCTTTCGGGAGATGACGTAGGGGAGCTTCACTACTCGTACTACCCTGTGGTCGCAGGGGCTGTGGAGCAGGAGATGGTCGAAGTAGCTGCACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005839 GO:0019774 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

Proteasome

Protein Analysis

317

Amino Acids

34.19

Weight (kDa)

5.66

Isoelectric Point (pI)

38.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Proteasome	PF00227	98 - 278	1.2e-52	Proteasome subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000613)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13060 AT1G13060 AT1G13060 AT3G26340
fragaria_vesca	FvH4_1g01201 FvH4_4g24020 FvH4_6g30500
malus_domestica	MD10G1030600.v1.1 MD16G1116800.v1.1
prunus_persica	Prupe.1G229300_v2.0.a1 Prupe.1G229300_v2.0.a1 Prupe.1G229300_v2.0.a1
pyrus_communis	pycom10g01980 pycom13g10110
rosa_chinensis	RchiOBHm_Chr4g0430701 RchiOBHm_Chr5g0003071
rosa_laevigata	RLG00000006954 RLG00000031090 RLG00000031094 RLG00000031099 RLG00000031107 RLG00000031108 RLG00000031111 RLG00000031116 RLG00000032188
rosa_multiflora	Rmu_sc0000131.1_g000009 Rmu_sc0000146.1_g000015 Rmu_sc0002209.1_g000027
rosa_roxburghii	Rroxscaffold_1G00061170 Rroxscaffold_1G00061240 Rroxscaffold_1G00061300 Rroxscaffold_1G00072510 Rroxscaffold_1G00072750 Rroxscaffold_1G00072760 Rroxscaffold_5G00372440 Rroxscaffold_6G00429800 Rroxscaffold_6G00429810 Rroxscaffold_6G00429820 Rroxscaffold_6G00429850
rosa_rugosa	Rorug04G0245300 Rorug04G0402100 Rorug04G0402100 Rorug04G0402100 Rorug05G0025600 Rorug05G0026200
rosa_samantha	Rh3BG233200 Rh3DG047000 Rh3DG047300 Rh3DG047400 Rh3DG047800 Rh4AG053100 Rh4AG227500 Rh4BG230300 Rh4BG309300 Rh4CG242400 Rh4DG160600 Rh4DG225800 Rh5AG024300 Rh5AG024400 Rh5AG024700 Rh5AG027100 Rh5AG119900 Rh5BG118400 Rh5CG027100 Rh5CG027300 Rh5CG027700 Rh5CG128900 Rh5DG026900 Rh5DG027000 Rh5DG027700 Rh5DG028000 Rh5DG028500
rosa_wichuraiana	Rw0G010900 Rw3G003590 Rw4G026180 Rw5G002310 Rw5G002480 Rw5G002600 Rw5G010340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	723
AccB1I	GGYRCC	1 cut(s)	723
AccI	GTMKAC	1 cut(s)	639
AccII	CGCG	2 cut(s)	126, 128
AciI	CCGC	6 cut(s)	111, 131, 366, 511, 807, 810
AclWI	GGATC	1 cut(s)	225
AfaI	GTAC	4 cut(s)	239, 427, 725, 893
AfiI	CCNNNNNNNGG	2 cut(s)	137, 293
AgsI	TTSAA	3 cut(s)	322, 404, 661
AjnI	CCWGG	1 cut(s)	622
AluBI	AGCT	9 cut(s)	30, 92, 269, 443, 541, 752, 856, 880, 941
AluI	AGCT	9 cut(s)	30, 92, 269, 443, 541, 752, 856, 880, 941
Alw26I	GTCTC	1 cut(s)	584
AlwI	GGATC	1 cut(s)	225
AlwNI	CAGNNNCTG	1 cut(s)	914
Ama87I	CYCGRG	1 cut(s)	351
AoxI	GGCC	2 cut(s)	354, 652
ApeKI	GCWGC	6 cut(s)	4, 341, 443, 541, 752, 941
Asp700I	GAANNNNTTC	1 cut(s)	270
Asp718I	GGTACC	1 cut(s)	723
AspLEI	GCGC	2 cut(s)	128, 130
AspS9I	GGNCC	3 cut(s)	354, 591, 620
AsuHPI	GGTGA	1 cut(s)	292
AvaI	CYCGRG	1 cut(s)	351
AvaII	GGWCC	2 cut(s)	591, 620
BanI	GGYRCC	1 cut(s)	723
BanII	GRGCYC	1 cut(s)	692
BarI	GAAGNNNNNNTAC	2 cut(s)	864, 896
BbsI	GAAGAC	1 cut(s)	54
BbvI	GCAGC	6 cut(s)	16, 328, 430, 528, 739, 928
BccI	CCATC	8 cut(s)	208, 245, 271, 320, 713, 791, 840, 922
BceAI	ACGGC	2 cut(s)	178, 639
BcgI	CGANNNNNNTGC	1 cut(s)	923
BciT130I	CCWGG	1 cut(s)	624
BcoDI	GTCTC	1 cut(s)	584
BfaI	CTAG	2 cut(s)	108, 765
BfmI	CTRYAG	1 cut(s)	741
BisI	GCNGC	8 cut(s)	5, 131, 342, 444, 542, 753, 808, 942
BlsI	GCNGC	8 cut(s)	6, 132, 343, 445, 543, 754, 809, 943
Bme1390I	CCNGG	1 cut(s)	624
Bme18I	GGWCC	2 cut(s)	591, 620
BmeT110I	CYCGRG	1 cut(s)	351
BmgT120I	GGNCC	3 cut(s)	354, 591, 620
BmiI	GGNNCC	6 cut(s)	174, 192, 592, 621, 725, 802
BmrFI	CCNGG	1 cut(s)	624
BmsI	GCATC	1 cut(s)	542
BpiI	GAAGAC	1 cut(s)	54
BpmI	CTGGAG	1 cut(s)	456
BpuEI	CTTGAG	2 cut(s)	72, 137
BsaI	GGTCTC	1 cut(s)	584
BsaXI	ACNNNNNCTCC	4 cut(s)	321, 351, 855, 885
Bsc4I	CCNNNNNNNGG	2 cut(s)	137, 293
Bse118I	RCCGGY	1 cut(s)	286
Bse1I	ACTGG	2 cut(s)	16, 454
BseBI	CCWGG	1 cut(s)	624
BseGI	GGATG	3 cut(s)	331, 721, 851
BseLI	CCNNNNNNNGG	2 cut(s)	137, 293
BseMII	CTCAG	2 cut(s)	597, 747
BseNI	ACTGG	2 cut(s)	16, 454
BsePI	GCGCGC	1 cut(s)	126
BseRI	GAGGAG	2 cut(s)	165, 453
BseXI	GCAGC	6 cut(s)	16, 328, 430, 528, 739, 928
BseYI	CCCAGC	1 cut(s)	606
BsgI	GTGCAG	2 cut(s)	54, 927
Bsh1236I	CGCG	2 cut(s)	126, 128
BshFI	GGCC	2 cut(s)	356, 654
BshNI	GGYRCC	1 cut(s)	723
BsiHKCI	CYCGRG	1 cut(s)	351
BsiSI	CCGG	1 cut(s)	287
BslFI	GGGAC	3 cut(s)	310, 604, 623
BslI	CCNNNNNNNGG	2 cut(s)	137, 293
BsmAI	GTCTC	1 cut(s)	584
BsmFI	GGGAC	3 cut(s)	310, 604, 623
BsmI	GAATGC	1 cut(s)	7
BsnI	GGCC	2 cut(s)	356, 654
Bso31I	GGTCTC	1 cut(s)	584
BsoBI	CYCGRG	1 cut(s)	351
Bsp1286I	GDGCHC	1 cut(s)	692
Bsp143I	GATC	4 cut(s)	33, 74, 217, 597
BspACI	CCGC	6 cut(s)	111, 131, 366, 511, 807, 810
BspANI	GGCC	2 cut(s)	356, 654
BspCNI	CTCAG	2 cut(s)	596, 748
BspFNI	CGCG	2 cut(s)	126, 128
BspLI	GGNNCC	6 cut(s)	174, 192, 592, 621, 725, 802
BspPI	GGATC	1 cut(s)	225
BspQI	GCTCTTC	1 cut(s)	763
BspT107I	GGYRCC	1 cut(s)	723
BspTNI	GGTCTC	1 cut(s)	584
BsrFI	RCCGGY	1 cut(s)	286
BsrI	ACTGG	2 cut(s)	16, 454
BssAI	RCCGGY	1 cut(s)	286
BssHII	GCGCGC	1 cut(s)	126
BssMI	GATC	4 cut(s)	33, 74, 217, 597
Bst2UI	CCWGG	1 cut(s)	624
Bst4CI	ACNGT	1 cut(s)	644
Bst6I	CTCTTC	1 cut(s)	763
BstC8I	GCNNGC	7 cut(s)	128, 288, 358, 546, 604, 692, 805
BstDEI	CTNAG	4 cut(s)	221, 241, 583, 756
BstF5I	GGATG	3 cut(s)	331, 721, 851
BstFNI	CGCG	2 cut(s)	126, 128
BstHHI	GCGC	2 cut(s)	128, 130
BstKTI	GATC	4 cut(s)	36, 77, 220, 600
BstMAI	GTCTC	1 cut(s)	584
BstMBI	GATC	4 cut(s)	33, 74, 217, 597
BstMWI	GCNNNNNNNGC	3 cut(s)	440, 761, 770
BstNI	CCWGG	1 cut(s)	624
BstNSI	RCATGY	1 cut(s)	421
BstSCI	CCNGG	1 cut(s)	622
BstSFI	CTRYAG	1 cut(s)	741
BstUI	CGCG	2 cut(s)	126, 128
BstV1I	GCAGC	6 cut(s)	16, 328, 430, 528, 739, 928
BstV2I	GAAGAC	1 cut(s)	54
BstX2I	RGATCY	1 cut(s)	217
BstYI	RGATCY	1 cut(s)	217
BsuRI	GGCC	2 cut(s)	356, 654
BtsCI	GGATG	3 cut(s)	331, 721, 851
BtsI	GCAGTG	1 cut(s)	154
BtsIMutI	CAGTG	2 cut(s)	154, 649
Cac8I	GCNNGC	7 cut(s)	128, 288, 358, 546, 604, 692, 805
CaiI	CAGNNNCTG	1 cut(s)	914
CfoI	GCGC	2 cut(s)	128, 130
Cfr10I	RCCGGY	1 cut(s)	286
Cfr13I	GGNCC	3 cut(s)	354, 591, 620
Csp6I	GTAC	4 cut(s)	238, 426, 724, 892
CviAII	CATG	7 cut(s)	334, 361, 418, 494, 595, 782, 830
CviQI	GTAC	4 cut(s)	238, 426, 724, 892
DdeI	CTNAG	4 cut(s)	221, 241, 583, 756
DpnI	GATC	4 cut(s)	35, 76, 219, 599
DpnII	GATC	4 cut(s)	33, 74, 217, 597
Eam1104I	CTCTTC	1 cut(s)	763
EarI	CTCTTC	1 cut(s)	763
EciI	GGCGGA	1 cut(s)	381
Eco24I	GRGCYC	1 cut(s)	692
Eco31I	GGTCTC	1 cut(s)	584
Eco47I	GGWCC	2 cut(s)	591, 620
Eco88I	CYCGRG	1 cut(s)	351
EcoO109I	RGGNCCY	1 cut(s)	620
EcoRII	CCWGG	1 cut(s)	622
EcoT38I	GRGCYC	1 cut(s)	692
FaeI	CATG	7 cut(s)	337, 364, 421, 497, 598, 785, 833
FaqI	GGGAC	3 cut(s)	310, 604, 623
FatI	CATG	7 cut(s)	333, 360, 417, 493, 594, 781, 829
FblI	GTMKAC	1 cut(s)	639
Fnu4HI	GCNGC	8 cut(s)	5, 131, 342, 444, 542, 753, 808, 942
FokI	GGATG	3 cut(s)	338, 728, 858
FriOI	GRGCYC	1 cut(s)	692
Fsp4HI	GCNGC	8 cut(s)	5, 131, 342, 444, 542, 753, 808, 942
FspBI	CTAG	2 cut(s)	108, 765
GlaI	GCGC	2 cut(s)	127, 129
GluI	GCNGC	8 cut(s)	5, 131, 342, 444, 542, 753, 808, 942
GsaI	CCCAGC	1 cut(s)	610
GsuI	CTGGAG	1 cut(s)	456
HaeIII	GGCC	2 cut(s)	356, 654
HapII	CCGG	1 cut(s)	287
HhaI	GCGC	2 cut(s)	128, 130
Hin1II	CATG	7 cut(s)	337, 364, 421, 497, 598, 785, 833
Hin6I	GCGC	2 cut(s)	126, 128
HinP1I	GCGC	2 cut(s)	126, 128
HincII	GTYRAC	1 cut(s)	640
HindII	GTYRAC	1 cut(s)	640
HindIII	AAGCTT	1 cut(s)	854
HinfI	GANTC	4 cut(s)	119, 330, 347, 469
HpaII	CCGG	1 cut(s)	287
HphI	GGTGA	1 cut(s)	292
Hpy166II	GTNNAC	1 cut(s)	640
Hpy188I	TCNGA	3 cut(s)	195, 261, 276
Hpy188III	TCNNGA	4 cut(s)	116, 158, 713, 861
Hpy8I	GTNNAC	1 cut(s)	640
Hpy99I	CGWCG	3 cut(s)	184, 199, 202
HpyAV	CCTTC	3 cut(s)	56, 256, 286
HpyCH4III	ACNGT	1 cut(s)	644
HpyCH4IV	ACGT	1 cut(s)	870
HpyCH4V	TGCA	5 cut(s)	4, 71, 493, 785, 944
HpyF10VI	GCNNNNNNNGC	3 cut(s)	440, 761, 770
HpyF3I	CTNAG	4 cut(s)	221, 241, 583, 756
HpySE526I	ACGT	1 cut(s)	870
Hsp92II	CATG	7 cut(s)	337, 364, 421, 497, 598, 785, 833
HspAI	GCGC	2 cut(s)	126, 128
KpnI	GGTACC	1 cut(s)	727
KroI	GCCGGC	1 cut(s)	286
KroNI	GCCGGC	1 cut(s)	288
Kzo9I	GATC	4 cut(s)	33, 74, 217, 597
LguI	GCTCTTC	1 cut(s)	763
LmnI	GCTCC	7 cut(s)	178, 440, 530, 800, 836, 877, 919
Lsp1109I	GCAGC	6 cut(s)	16, 328, 430, 528, 739, 928
LweI	GCATC	1 cut(s)	542
MaeI	CTAG	2 cut(s)	108, 765
MaeII	ACGT	1 cut(s)	870
MaeIII	GTNAC	2 cut(s)	120, 523
MalI	GATC	4 cut(s)	35, 76, 219, 599
MboI	GATC	4 cut(s)	33, 74, 217, 597
MboII	GAAGA	8 cut(s)	41, 54, 310, 403, 406, 758, 780, 862
MflI	RGATCY	1 cut(s)	217
MhlI	GDGCHC	1 cut(s)	692
MlyI	GAGTC	2 cut(s)	128, 339
MmeI	TCCRAC	1 cut(s)	218
MroNI	GCCGGC	1 cut(s)	286
MroXI	GAANNNNTTC	1 cut(s)	270
MseI	TTAA	1 cut(s)	480
MspA1I	CMGCKG	2 cut(s)	133, 807
MspI	CCGG	1 cut(s)	287
MspR9I	CCNGG	1 cut(s)	624
Mva1269I	GAATGC	1 cut(s)	7
MvaI	CCWGG	1 cut(s)	624
MvnI	CGCG	2 cut(s)	126, 128
MwoI	GCNNNNNNNGC	3 cut(s)	440, 761, 770
NaeI	GCCGGC	1 cut(s)	288
NdeII	GATC	4 cut(s)	33, 74, 217, 597
NgoMIV	GCCGGC	1 cut(s)	286
NlaIII	CATG	7 cut(s)	337, 364, 421, 497, 598, 785, 833
NlaIV	GGNNCC	6 cut(s)	174, 192, 592, 621, 725, 802
NmuCI	GTSAC	1 cut(s)	120
NspI	RCATGY	1 cut(s)	421
PauI	GCGCGC	1 cut(s)	126
PciSI	GCTCTTC	1 cut(s)	763
PcsI	WCGNNNNNNNCGW	1 cut(s)	176
PctI	GAATGC	1 cut(s)	7
PdiI	GCCGGC	1 cut(s)	288
PdmI	GAANNNNTTC	1 cut(s)	270
PfeI	GAWTC	2 cut(s)	347, 469
PfoI	TCCNGGA	1 cut(s)	622
PkrI	GCNGC	8 cut(s)	6, 132, 343, 445, 543, 754, 809, 943
PleI	GAGTC	2 cut(s)	127, 338
PpsI	GAGTC	2 cut(s)	127, 338
PpuMI	RGGWCCY	1 cut(s)	620
Psp5II	RGGWCCY	1 cut(s)	620
Psp6I	CCWGG	1 cut(s)	622
PspFI	CCCAGC	1 cut(s)	606
PspGI	CCWGG	1 cut(s)	622
PspN4I	GGNNCC	6 cut(s)	174, 192, 592, 621, 725, 802
PspPI	GGNCC	3 cut(s)	354, 591, 620
PspPPI	RGGWCCY	1 cut(s)	620
PstNI	CAGNNNCTG	1 cut(s)	914
PsuI	RGATCY	1 cut(s)	217
PteI	GCGCGC	1 cut(s)	126
RsaI	GTAC	4 cut(s)	239, 427, 725, 893
RsaNI	GTAC	4 cut(s)	238, 426, 724, 892
SalI	GTCGAC	1 cut(s)	638
SapI	GCTCTTC	1 cut(s)	763
SaqAI	TTAA	1 cut(s)	480
SatI	GCNGC	8 cut(s)	5, 131, 342, 444, 542, 753, 808, 942
Sau3AI	GATC	4 cut(s)	33, 74, 217, 597
Sau96I	GGNCC	3 cut(s)	354, 591, 620
SchI	GAGTC	2 cut(s)	128, 339
ScrFI	CCNGG	1 cut(s)	624
SduI	GDGCHC	1 cut(s)	692
SfaNI	GCATC	1 cut(s)	542
SfcI	CTRYAG	1 cut(s)	741
SinI	GGWCC	2 cut(s)	591, 620
SmlI	CTYRAG	2 cut(s)	87, 116
SmoI	CTYRAG	2 cut(s)	87, 116
SsiI	CCGC	6 cut(s)	111, 131, 366, 511, 807, 810
SspMI	CTAG	2 cut(s)	108, 765
StyD4I	CCNGG	1 cut(s)	622
TaaI	ACNGT	1 cut(s)	644
TaiI	ACGT	1 cut(s)	873
TaqI	TCGA	4 cut(s)	32, 186, 639, 933
TauI	GCSGC	2 cut(s)	133, 810
TfiI	GAWTC	2 cut(s)	347, 469
Tru1I	TTAA	1 cut(s)	480
Tru9I	TTAA	1 cut(s)	480
TscAI	CASTG	2 cut(s)	154, 649
TseFI	GTSAC	1 cut(s)	120
TseI	GCWGC	6 cut(s)	4, 341, 443, 541, 752, 941
Tsp45I	GTSAC	1 cut(s)	120
TspDTI	ATGAA	1 cut(s)	304
TspGWI	ACGGA	2 cut(s)	168, 782
TspRI	CASTG	2 cut(s)	154, 649
VpaK11BI	GGWCC	2 cut(s)	591, 620
XceI	RCATGY	1 cut(s)	421
XmiI	GTMKAC	1 cut(s)	639
XmnI	GAANNNNTTC	1 cut(s)	270
XspI	CTAG	2 cut(s)	108, 765

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.