Rh5AG027100

threonine-type endopeptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000613
Physical Location & Seq
Reverse (-)
1856312 .. 1857046
735 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG027100.1

Sequence Viewer

Length: 411 bp
ATGACTCCAATATCTTCCAACATGATTTACGTAGTACAAGGGGTAGAGGCTGATTGTACACAAATGAGGTTGCATATAAGTGAGAAGTTTCCGGACATGGATGAACATCTTGGCAATGCACCTACAGTTTCATGTGTAGTAGAAACGGTGTATAAGTATCTGAACAGTCTCGATGACAAGAATAAAGGTCCTCAAGTTCATCGTGTGTTTCTAAAAAACAAAAACGTTGTGAAAGAAAGAGCTTGTATGCCTGCAGCGCTAGGAAGTGGTCAAGTTCATGCTCTTCGTATCCTTAATAAAAGTTACAACTACAATATGTCCACTGCTGATGCTATTGATTTGGCACGTAAAGCTTTATTTAATGCAACCTTCTATGACAAGCATAGTGGTGGAGAACTGAAAGGTACGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000502 GO:0001775 GO:0002376 GO:0002520 GO:0002521 GO:0003674 GO:0003824 GO:0004175 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005783 GO:0005789 GO:0005829 GO:0005839 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010498 GO:0010499 GO:0012505 GO:0016020 GO:0016043 GO:0016579 GO:0016787 GO:0019221 GO:0019222 GO:0019538 GO:0019774 GO:0019882 GO:0019941 GO:0022607 GO:0023052 GO:0030097 GO:0030098 GO:0030154 GO:0030162 GO:0030163 GO:0030217 GO:0031597 GO:0031974 GO:0031981 GO:0031984 GO:0032501 GO:0032502 GO:0032991 GO:0034097 GO:0034340 GO:0034515 GO:0034622 GO:0036037 GO:0036211 GO:0042110 GO:0042175 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043248 GO:0043374 GO:0043412 GO:0043632 GO:0043687 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044432 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045087 GO:0045321 GO:0045444 GO:0046631 GO:0046632 GO:0046649 GO:0048513 GO:0048534 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051246 GO:0051336 GO:0051603 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0060337 GO:0065003 GO:0065007 GO:0065009 GO:0070011 GO:0070013 GO:0070646 GO:0070647 GO:0070887 GO:0071310 GO:0071345 GO:0071357 GO:0071704 GO:0071840 GO:0080090 GO:0080129 GO:0098827 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369 GO:1990111
KEGG Pathways
Metabolic & Signaling
ko02010 ko03050 ko04145 ko04612 ko05168 ko05340 map02010 map03050 map04145 map04612 map05168 map05340
Pfam Domains
Protein Families
Proteasome

Protein Analysis

136

Amino Acids

15.12

Weight (kDa)

8.42

Isoelectric Point (pI)

40.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Proteasome PF00227 84 - 133 1.1e-06 Proteasome subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 91
AclI AACGTT 1 cut(s) 225
AfaI GTAC 3 cut(s) 36, 58, 406
AfeI AGCGCT 1 cut(s) 258
AluBI AGCT 2 cut(s) 242, 353
AluI AGCT 2 cut(s) 242, 353
Alw26I GTCTC 1 cut(s) 173
Aor13HI TCCGGA 1 cut(s) 91
Aor51HI AGCGCT 1 cut(s) 258
ApeKI GCWGC 1 cut(s) 254
AspLEI GCGC 1 cut(s) 259
AspS9I GGNCC 1 cut(s) 188
AvaII GGWCC 1 cut(s) 188
BbvI GCAGC 1 cut(s) 266
BciVI GTATCC 1 cut(s) 299
BcoDI GTCTC 1 cut(s) 173
BfaI CTAG 1 cut(s) 260
BfmI CTRYAG 2 cut(s) 123, 252
BfoI RGCGCY 1 cut(s) 260
BfuI GTATCC 1 cut(s) 299
BisI GCNGC 1 cut(s) 255
BlsI GCNGC 1 cut(s) 256
Bme18I GGWCC 1 cut(s) 188
BmgT120I GGNCC 1 cut(s) 188
BmsI GCATC 1 cut(s) 319
BpuEI CTTGAG 1 cut(s) 177
BsaAI YACGTR 3 cut(s) 31, 347, 408
BsaBI GATNNNNATC 1 cut(s) 105
BsaWI WCCGGW 1 cut(s) 91
Bse3DI GCAATG 1 cut(s) 121
Bse8I GATNNNNATC 1 cut(s) 105
BseAI TCCGGA 1 cut(s) 91
BseGI GGATG 1 cut(s) 106
BseJI GATNNNNATC 1 cut(s) 105
BseMI GCAATG 1 cut(s) 121
BseXI GCAGC 1 cut(s) 266
BsiSI CCGG 1 cut(s) 92
BsmAI GTCTC 1 cut(s) 173
Bsp13I TCCGGA 1 cut(s) 91
Bsp1407I TGTACA 1 cut(s) 56
BspEI TCCGGA 1 cut(s) 91
BspMAI CTGCAG 1 cut(s) 256
BspQI GCTCTTC 1 cut(s) 288
BsrDI GCAATG 1 cut(s) 121
BsrGI TGTACA 1 cut(s) 56
Bst4CI ACNGT 3 cut(s) 127, 148, 167
Bst6I CTCTTC 1 cut(s) 288
BstAUI TGTACA 1 cut(s) 56
BstBAI YACGTR 3 cut(s) 31, 347, 408
BstC8I GCNNGC 1 cut(s) 252
BstF5I GGATG 1 cut(s) 106
BstH2I RGCGCY 1 cut(s) 260
BstHHI GCGC 1 cut(s) 259
BstMAI GTCTC 1 cut(s) 173
BstMWI GCNNNNNNNGC 2 cut(s) 256, 350
BstSFI CTRYAG 2 cut(s) 123, 252
BstSNI TACGTA 2 cut(s) 31, 408
BstV1I GCAGC 1 cut(s) 266
BsuI GTATCC 1 cut(s) 299
BtsCI GGATG 1 cut(s) 106
BtsI GCAGTG 1 cut(s) 321
BtsIMutI CAGTG 1 cut(s) 321
Cac8I GCNNGC 1 cut(s) 252
CfoI GCGC 1 cut(s) 259
Cfr13I GGNCC 1 cut(s) 188
Csp6I GTAC 3 cut(s) 35, 57, 405
CspCI CAANNNNNGTGG 2 cut(s) 367, 402
CviAII CATG 4 cut(s) 22, 97, 132, 278
CviJI RGCY 3 cut(s) 50, 242, 353
CviKI_1 RGCY 3 cut(s) 50, 242, 353
CviQI GTAC 3 cut(s) 35, 57, 405
Eam1104I CTCTTC 1 cut(s) 288
EarI CTCTTC 1 cut(s) 288
Eco105I TACGTA 2 cut(s) 31, 408
Eco47I GGWCC 1 cut(s) 188
Eco47III AGCGCT 1 cut(s) 258
EcoO109I RGGNCCY 1 cut(s) 188
FaeI CATG 4 cut(s) 25, 100, 135, 281
FatI CATG 4 cut(s) 21, 96, 131, 277
Fnu4HI GCNGC 1 cut(s) 255
FokI GGATG 1 cut(s) 113
Fsp4HI GCNGC 1 cut(s) 255
FspBI CTAG 1 cut(s) 260
GlaI GCGC 1 cut(s) 258
GluI GCNGC 1 cut(s) 255
HaeII RGCGCY 1 cut(s) 260
HapII CCGG 1 cut(s) 92
HhaI GCGC 1 cut(s) 259
Hin1II CATG 4 cut(s) 25, 100, 135, 281
Hin6I GCGC 1 cut(s) 257
HinP1I GCGC 1 cut(s) 257
HindIII AAGCTT 1 cut(s) 351
HinfI GANTC 1 cut(s) 4
HpaII CCGG 1 cut(s) 92
Hpy166II GTNNAC 2 cut(s) 59, 321
Hpy188I TCNGA 1 cut(s) 162
Hpy188III TCNNGA 2 cut(s) 92, 170
Hpy8I GTNNAC 2 cut(s) 59, 321
HpyAV CCTTC 1 cut(s) 379
HpyCH4III ACNGT 3 cut(s) 127, 148, 167
HpyCH4IV ACGT 4 cut(s) 30, 225, 346, 407
HpyCH4V TGCA 4 cut(s) 73, 119, 254, 365
HpyF10VI GCNNNNNNNGC 2 cut(s) 256, 350
HpySE526I ACGT 4 cut(s) 30, 225, 346, 407
Hsp92II CATG 4 cut(s) 25, 100, 135, 281
HspAI GCGC 1 cut(s) 257
Kpn2I TCCGGA 1 cut(s) 91
LguI GCTCTTC 1 cut(s) 288
LpnPI CCDG 2 cut(s) 105, 264
Lsp1109I GCAGC 1 cut(s) 266
LweI GCATC 1 cut(s) 319
MaeI CTAG 1 cut(s) 260
MaeII ACGT 4 cut(s) 30, 225, 346, 407
MaeIII GTNAC 1 cut(s) 302
MboII GAAGA 2 cut(s) 6, 275
MmeI TCCRAC 1 cut(s) 42
MnlI CCTC 3 cut(s) 40, 60, 201
MroI TCCGGA 1 cut(s) 91
MseI TTAA 2 cut(s) 294, 360
MslI CAYNNNNRTG 2 cut(s) 78, 387
MspI CCGG 1 cut(s) 92
MwoI GCNNNNNNNGC 2 cut(s) 256, 350
NlaIII CATG 4 cut(s) 25, 100, 135, 281
PciSI GCTCTTC 1 cut(s) 288
PkrI GCNGC 1 cut(s) 256
Ppu21I YACGTR 3 cut(s) 31, 347, 408
PpuMI RGGWCCY 1 cut(s) 188
Psp1406I AACGTT 1 cut(s) 225
Psp5II RGGWCCY 1 cut(s) 188
PspPI GGNCC 1 cut(s) 188
PspPPI RGGWCCY 1 cut(s) 188
PstI CTGCAG 1 cut(s) 256
RsaI GTAC 3 cut(s) 36, 58, 406
RsaNI GTAC 3 cut(s) 35, 57, 405
RseI CAYNNNNRTG 2 cut(s) 78, 387
SapI GCTCTTC 1 cut(s) 288
SaqAI TTAA 2 cut(s) 294, 360
SatI GCNGC 1 cut(s) 255
Sau96I GGNCC 1 cut(s) 188
SfaNI GCATC 1 cut(s) 319
SfcI CTRYAG 2 cut(s) 123, 252
SinI GGWCC 1 cut(s) 188
SmiMI CAYNNNNRTG 2 cut(s) 78, 387
SmlI CTYRAG 1 cut(s) 192
SmoI CTYRAG 1 cut(s) 192
SnaBI TACGTA 2 cut(s) 31, 408
SspMI CTAG 1 cut(s) 260
TaaI ACNGT 3 cut(s) 127, 148, 167
TaiI ACGT 4 cut(s) 33, 228, 349, 410
TaqI TCGA 1 cut(s) 171
TatI WGTACW 2 cut(s) 34, 56
Tru1I TTAA 2 cut(s) 294, 360
Tru9I TTAA 2 cut(s) 294, 360
TscAI CASTG 1 cut(s) 328
TseI GCWGC 1 cut(s) 254
TspDTI ATGAA 4 cut(s) 117, 120, 188, 266
TspRI CASTG 1 cut(s) 328
VpaK11BI GGWCC 1 cut(s) 188
XspI CTAG 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.