Rh5DG028000

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Reverse (-)
2013024 .. 2026489
13466 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG028000.1

Sequence Viewer

Length: 336 bp
ATGCAGAAAGGTATTACGGTAACAGCAACCCATTGTGTAGCCCATCGTGTATTGAAGGAGCAGCATTGTGTAGCCAATGGTGTATTGGAGGAGCAGCGGTTATCCTTCCACCGCCTTATATTCAACTCTGGAGTTGAGGCTTCAAATGCATATGCACTCACAGCTACTCATGGTGAAACTGATTCTCAACTTGTAGAAAAGTTTCCGAACCAATTATTGTTGAAAACTGCGTTTCAAAAAAAATTGTTGTTGAAAACTGTGGAGCAAAGTGTTGAACTCTATTTGAATCGGAGCTCAAAAGATTTGCTCGATCGAGTTCATACGCACCCAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

12.53

Weight (kDa)

8.65

Isoelectric Point (pI)

21.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 97, 112
AgsI TTSAA 8 cut(s) 55, 124, 144, 223, 236, 253, 275, 286
AluBI AGCT 2 cut(s) 164, 294
AluI AGCT 2 cut(s) 164, 294
Alw21I GWGCWC 1 cut(s) 296
ApeKI GCWGC 2 cut(s) 61, 94
Asp700I GAANNNNTTC 1 cut(s) 201
AsuHPI GGTGA 1 cut(s) 185
BanII GRGCYC 1 cut(s) 296
Bbv12I GWGCWC 1 cut(s) 296
BbvI GCAGC 2 cut(s) 73, 106
BccI CCATC 1 cut(s) 51
BisI GCNGC 2 cut(s) 62, 95
BlsI GCNGC 2 cut(s) 63, 96
BpmI CTGGAG 1 cut(s) 150
BsaXI ACNNNNNCTCC 2 cut(s) 83, 113
BseRI GAGGAG 1 cut(s) 104
BseXI GCAGC 2 cut(s) 73, 106
Bsh1285I CGRYCG 1 cut(s) 313
BsiEI CGRYCG 1 cut(s) 313
BsiHKAI GWGCWC 1 cut(s) 296
Bsp1286I GDGCHC 1 cut(s) 296
Bsp143I GATC 1 cut(s) 310
BspACI CCGC 2 cut(s) 97, 112
BssMI GATC 1 cut(s) 310
Bst4CI ACNGT 2 cut(s) 19, 259
BstKTI GATC 1 cut(s) 313
BstMBI GATC 1 cut(s) 310
BstMCI CGRYCG 1 cut(s) 313
BstMWI GCNNNNNNNGC 2 cut(s) 146, 161
BstV1I GCAGC 2 cut(s) 73, 106
CviAII CATG 1 cut(s) 170
CviJI RGCY 5 cut(s) 41, 74, 140, 164, 294
CviKI_1 RGCY 5 cut(s) 41, 74, 140, 164, 294
DpnI GATC 1 cut(s) 312
DpnII GATC 1 cut(s) 310
Ecl136II GAGCTC 1 cut(s) 294
Eco24I GRGCYC 1 cut(s) 296
Eco53kI GAGCTC 1 cut(s) 294
EcoICRI GAGCTC 1 cut(s) 294
EcoT22I ATGCAT 1 cut(s) 151
EcoT38I GRGCYC 1 cut(s) 296
FaeI CATG 1 cut(s) 173
FaiI YATR 5 cut(s) 119, 151, 153, 171, 321
FatI CATG 1 cut(s) 169
FauNDI CATATG 1 cut(s) 151
Fnu4HI GCNGC 2 cut(s) 62, 95
FriOI GRGCYC 1 cut(s) 296
Fsp4HI GCNGC 2 cut(s) 62, 95
GluI GCNGC 2 cut(s) 62, 95
GsuI CTGGAG 1 cut(s) 150
Hin1II CATG 1 cut(s) 173
HinfI GANTC 2 cut(s) 182, 286
HphI GGTGA 1 cut(s) 185
Hpy188I TCNGA 2 cut(s) 207, 291
Hpy188III TCNNGA 1 cut(s) 129
HpyAV CCTTC 2 cut(s) 49, 115
HpyCH4III ACNGT 2 cut(s) 19, 259
HpyCH4V TGCA 3 cut(s) 4, 149, 155
HpyF10VI GCNNNNNNNGC 2 cut(s) 146, 161
Hsp92II CATG 1 cut(s) 173
Kzo9I GATC 1 cut(s) 310
LmnI GCTCC 4 cut(s) 58, 91, 262, 291
LpnPI CCDG 1 cut(s) 114
Lsp1109I GCAGC 2 cut(s) 73, 106
MaeIII GTNAC 1 cut(s) 19
MalI GATC 1 cut(s) 312
MboI GATC 1 cut(s) 310
MhlI GDGCHC 1 cut(s) 296
MluCI AATT 3 cut(s) 212, 242, 330
MnlI CCTC 2 cut(s) 82, 130
Mph1103I ATGCAT 1 cut(s) 151
MroXI GAANNNNTTC 1 cut(s) 201
MspA1I CMGCKG 1 cut(s) 97
MwoI GCNNNNNNNGC 2 cut(s) 146, 161
NdeI CATATG 1 cut(s) 151
NdeII GATC 1 cut(s) 310
NlaIII CATG 1 cut(s) 173
NsiI ATGCAT 1 cut(s) 151
PdmI GAANNNNTTC 1 cut(s) 201
PfeI GAWTC 2 cut(s) 182, 286
PkrI GCNGC 2 cut(s) 63, 96
Ple19I CGATCG 1 cut(s) 313
Psp124BI GAGCTC 1 cut(s) 296
PvuI CGATCG 1 cut(s) 313
SacI GAGCTC 1 cut(s) 296
SatI GCNGC 2 cut(s) 62, 95
Sau3AI GATC 1 cut(s) 310
SduI GDGCHC 1 cut(s) 296
SetI ASST 3 cut(s) 13, 166, 296
SgeI CNNG 6 cut(s) 59, 141, 182, 203, 320, 326
Sse9I AATT 3 cut(s) 212, 242, 330
SsiI CCGC 2 cut(s) 97, 112
SstI GAGCTC 1 cut(s) 296
TaaI ACNGT 2 cut(s) 19, 259
TaqI TCGA 2 cut(s) 309, 313
TasI AATT 3 cut(s) 212, 242, 330
TfiI GAWTC 2 cut(s) 182, 286
TseI GCWGC 2 cut(s) 61, 94
TspDTI ATGAA 1 cut(s) 308
XcmI CCANNNNNNNNNTGG 1 cut(s) 82
XmnI GAANNNNTTC 1 cut(s) 201
Zsp2I ATGCAT 1 cut(s) 151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.