Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000613

Physical Location & Seq

Genomic Coordinates Forward (+)

1827699 .. 1828858

Gene Structure 1160 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28440

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGTATGAGTATCTGAATAGTCTGGATGACAAGGATATAGTATGTGGAGCTATCATCGTTGGATGGGATGCTAATTCGGGTCCTGAATTTCATCGCGTTTTTATAAAAAACAAAAAGGTTGTGAAACAAAGAGGTTCTATGCCTTTAGCGCTAGGAAGTGGTCAAGGTCATGCTCTTCGTATGCTTCAAAGTATCGACTACAATATGTCCACTGATGATGCTGCTGATTTGGCGTTTAAAACTTTATTTAATGCAACCTACTATGATAAGCATAGTGGTGGAGAACTGAAAGTTTATCACATTAATGAATCTGGATGGAAGCAGCTCCCTGTCATGAATGCTTTGGAAGCTTACACAAGATATTACGACCTTCACAGTCGCTTTGAACGGAAAACGCTTTTCTTGGTTGTGGATGCCGGGATCCAACCTATTTCCGCAAACGACCTTATAGAACACTTCCAGCCACATGCAAATTTACTCGCATCCCATCGTGTAGCCCTCTGTAAATTTGGAGGTGATTGCTTCTACTTCCACCGCCTTGTGTTCGAGTTTGAAGATGAAGCAAAAAGGGCATATGAAACTACAACTCCTCATGTTCGAACTACTCCCTCGTACCTAGAACGGTTTCCAGATCAAGTGGTCTTGGATAATAAGAATCCAAGTGTTACAGTTTATGTGAATTGGAGCTCAAGGGGTTTGCTGGAATTTTTACACGATGAATGTCAGTTATTATATAAGATGGTTGATAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005839 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0019538 GO:0019774 GO:0032991 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044464 GO:0071704 GO:1901564 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

Proteasome

Protein Analysis

250

Amino Acids

28.7

Weight (kDa)

5.98

Isoelectric Point (pI)

35.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000613)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13060 AT1G13060 AT1G13060 AT3G26340
fragaria_vesca	FvH4_1g01201 FvH4_4g24020 FvH4_6g30500
malus_domestica	MD10G1030600.v1.1 MD16G1116800.v1.1
prunus_persica	Prupe.1G229300_v2.0.a1 Prupe.1G229300_v2.0.a1 Prupe.1G229300_v2.0.a1
pyrus_communis	pycom10g01980 pycom13g10110
rosa_chinensis	RchiOBHm_Chr4g0430701 RchiOBHm_Chr5g0003071
rosa_laevigata	RLG00000006954 RLG00000031090 RLG00000031094 RLG00000031099 RLG00000031107 RLG00000031108 RLG00000031111 RLG00000031116 RLG00000032188
rosa_multiflora	Rmu_sc0000131.1_g000009 Rmu_sc0000146.1_g000015 Rmu_sc0002209.1_g000027
rosa_roxburghii	Rroxscaffold_1G00061170 Rroxscaffold_1G00061240 Rroxscaffold_1G00061300 Rroxscaffold_1G00072510 Rroxscaffold_1G00072750 Rroxscaffold_1G00072760 Rroxscaffold_5G00372440 Rroxscaffold_6G00429800 Rroxscaffold_6G00429810 Rroxscaffold_6G00429820 Rroxscaffold_6G00429850
rosa_rugosa	Rorug04G0245300 Rorug04G0402100 Rorug04G0402100 Rorug04G0402100 Rorug05G0025600 Rorug05G0026200
rosa_samantha	Rh3BG233200 Rh3DG047000 Rh3DG047300 Rh3DG047400 Rh3DG047800 Rh4AG053100 Rh4AG227500 Rh4BG230300 Rh4BG309300 Rh4CG242400 Rh4DG160600 Rh4DG225800 Rh5AG024300 Rh5AG024400 Rh5AG024700 Rh5AG027100 Rh5AG119900 Rh5BG118400 Rh5CG027100 Rh5CG027300 Rh5CG027700 Rh5CG128900 Rh5DG026900 Rh5DG027000 Rh5DG027700 Rh5DG028000 Rh5DG028500
rosa_wichuraiana	Rw0G010900 Rw3G003590 Rw4G026180 Rw5G002310 Rw5G002480 Rw5G002600 Rw5G010340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	104
AccII	CGCG	1 cut(s)	96
AciI	CCGC	2 cut(s)	435, 535
AclWI	GGATC	2 cut(s)	415, 428
AcsI	RAATTY	4 cut(s)	86, 472, 506, 704
AfaI	GTAC	1 cut(s)	614
AfeI	AGCGCT	1 cut(s)	150
AgsI	TTSAA	3 cut(s)	188, 386, 554
AluBI	AGCT	4 cut(s)	50, 325, 350, 687
AluI	AGCT	4 cut(s)	50, 325, 350, 687
Alw21I	GWGCWC	1 cut(s)	689
AlwI	GGATC	2 cut(s)	415, 428
Aor51HI	AGCGCT	1 cut(s)	150
ApeKI	GCWGC	2 cut(s)	221, 322
ApoI	RAATTY	4 cut(s)	86, 472, 506, 704
AseI	ATTAAT	1 cut(s)	303
Asp700I	GAANNNNTTC	1 cut(s)	624
AspLEI	GCGC	1 cut(s)	151
AspS9I	GGNCC	1 cut(s)	80
AsuC2I	CCSGG	1 cut(s)	418
AsuHPI	GGTGA	1 cut(s)	527
AsuII	TTCGAA	1 cut(s)	598
AvaII	GGWCC	1 cut(s)	80
BamHI	GGATCC	1 cut(s)	420
BanII	GRGCYC	1 cut(s)	689
Bbv12I	GWGCWC	1 cut(s)	689
BbvI	GCAGC	2 cut(s)	208, 334
BccI	CCATC	4 cut(s)	57, 309, 495, 733
BcnI	CCSGG	1 cut(s)	418
BfaI	CTAG	2 cut(s)	152, 617
BfoI	RGCGCY	1 cut(s)	152
BisI	GCNGC	2 cut(s)	222, 323
BlsI	GCNGC	2 cut(s)	223, 324
Bme1390I	CCNGG	1 cut(s)	418
Bme18I	GGWCC	1 cut(s)	80
BmgT120I	GGNCC	1 cut(s)	80
BmiI	GGNNCC	2 cut(s)	81, 422
BmrFI	CCNGG	1 cut(s)	418
BmsI	GCATC	4 cut(s)	58, 208, 403, 491
Bpu14I	TTCGAA	1 cut(s)	598
BpuEI	CTTGAG	1 cut(s)	673
BpuMI	CCSGG	1 cut(s)	418
BsaXI	ACNNNNNCTCC	2 cut(s)	571, 601
BseGI	GGATG	6 cut(s)	31, 68, 73, 320, 418, 482
BseRI	GAGGAG	1 cut(s)	579
BseXI	GCAGC	2 cut(s)	208, 334
Bsh1236I	CGCG	1 cut(s)	96
BsiHKAI	GWGCWC	1 cut(s)	689
BsiSI	CCGG	1 cut(s)	417
BsmI	GAATGC	1 cut(s)	343
Bsp119I	TTCGAA	1 cut(s)	598
Bsp1286I	GDGCHC	1 cut(s)	689
Bsp143I	GATC	2 cut(s)	420, 631
BspACI	CCGC	2 cut(s)	435, 535
BspFNI	CGCG	1 cut(s)	96
BspHI	TCATGA	1 cut(s)	333
BspLI	GGNNCC	2 cut(s)	81, 422
BspPI	GGATC	2 cut(s)	415, 428
BspQI	GCTCTTC	1 cut(s)	180
BspT104I	TTCGAA	1 cut(s)	598
BssMI	GATC	2 cut(s)	420, 631
Bst4CI	ACNGT	3 cut(s)	377, 624, 670
Bst6I	CTCTTC	1 cut(s)	180
BstBI	TTCGAA	1 cut(s)	598
BstF5I	GGATG	6 cut(s)	31, 68, 73, 320, 418, 482
BstFNI	CGCG	1 cut(s)	96
BstH2I	RGCGCY	1 cut(s)	152
BstHHI	GCGC	1 cut(s)	151
BstKTI	GATC	2 cut(s)	423, 634
BstMBI	GATC	2 cut(s)	420, 631
BstMWI	GCNNNNNNNGC	4 cut(s)	148, 230, 347, 569
BstNSI	RCATGY	1 cut(s)	470
BstSCI	CCNGG	1 cut(s)	416
BstUI	CGCG	1 cut(s)	96
BstV1I	GCAGC	2 cut(s)	208, 334
BstX2I	RGATCY	1 cut(s)	420
BstYI	RGATCY	1 cut(s)	420
BtgZI	GCGATG	1 cut(s)	77
BtsCI	GGATG	6 cut(s)	31, 68, 73, 320, 418, 482
BtsIMutI	CAGTG	1 cut(s)	210
CciI	TCATGA	1 cut(s)	333
CfoI	GCGC	1 cut(s)	151
Cfr13I	GGNCC	1 cut(s)	80
Csp6I	GTAC	1 cut(s)	613
CviAII	CATG	4 cut(s)	170, 334, 467, 593
CviJI	RGCY	6 cut(s)	50, 325, 350, 463, 497, 687
CviKI_1	RGCY	6 cut(s)	50, 325, 350, 463, 497, 687
CviQI	GTAC	1 cut(s)	613
DpnI	GATC	2 cut(s)	422, 633
DpnII	GATC	2 cut(s)	420, 631
DraI	TTTAAA	1 cut(s)	238
Eam1104I	CTCTTC	1 cut(s)	180
EarI	CTCTTC	1 cut(s)	180
Ecl136II	GAGCTC	1 cut(s)	687
Eco24I	GRGCYC	1 cut(s)	689
Eco47I	GGWCC	1 cut(s)	80
Eco47III	AGCGCT	1 cut(s)	150
Eco53kI	GAGCTC	1 cut(s)	687
EcoICRI	GAGCTC	1 cut(s)	687
EcoO109I	RGGNCCY	1 cut(s)	80
EcoT38I	GRGCYC	1 cut(s)	689
FaeI	CATG	4 cut(s)	173, 337, 470, 596
FatI	CATG	4 cut(s)	169, 333, 466, 592
FauNDI	CATATG	1 cut(s)	574
Fnu4HI	GCNGC	2 cut(s)	222, 323
FokI	GGATG	6 cut(s)	38, 75, 80, 327, 425, 469
FriOI	GRGCYC	1 cut(s)	689
Fsp4HI	GCNGC	2 cut(s)	222, 323
FspBI	CTAG	2 cut(s)	152, 617
GlaI	GCGC	1 cut(s)	150
GluI	GCNGC	2 cut(s)	222, 323
HaeII	RGCGCY	1 cut(s)	152
HapII	CCGG	1 cut(s)	417
HhaI	GCGC	1 cut(s)	151
Hin1II	CATG	4 cut(s)	173, 337, 470, 596
Hin6I	GCGC	1 cut(s)	149
HinP1I	GCGC	1 cut(s)	149
HindIII	AAGCTT	1 cut(s)	348
HinfI	GANTC	2 cut(s)	308, 655
HpaII	CCGG	1 cut(s)	417
HphI	GGTGA	1 cut(s)	527
Hpy166II	GTNNAC	1 cut(s)	210
Hpy188I	TCNGA	1 cut(s)	15
Hpy188III	TCNNGA	5 cut(s)	23, 83, 312, 334, 629
Hpy8I	GTNNAC	1 cut(s)	210
HpyAV	CCTTC	1 cut(s)	380
HpyCH4III	ACNGT	3 cut(s)	377, 624, 670
HpyCH4V	TGCA	2 cut(s)	254, 470
HpyF10VI	GCNNNNNNNGC	4 cut(s)	148, 230, 347, 569
Hsp92II	CATG	4 cut(s)	173, 337, 470, 596
HspAI	GCGC	1 cut(s)	149
Kzo9I	GATC	2 cut(s)	420, 631
LguI	GCTCTTC	1 cut(s)	180
LmnI	GCTCC	3 cut(s)	47, 330, 684
LpnPI	CCDG	8 cut(s)	8, 96, 297, 342, 430, 473, 642, 686
Lsp1109I	GCAGC	2 cut(s)	208, 334
LweI	GCATC	4 cut(s)	58, 208, 403, 491
MaeI	CTAG	2 cut(s)	152, 617
MaeIII	GTNAC	1 cut(s)	664
MalI	GATC	2 cut(s)	422, 633
MboI	GATC	2 cut(s)	420, 631
MboII	GAAGA	2 cut(s)	167, 566
MflI	RGATCY	1 cut(s)	420
MhlI	GDGCHC	1 cut(s)	689
MluCI	AATT	6 cut(s)	73, 86, 472, 506, 679, 704
MmeI	TCCRAC	2 cut(s)	40, 448
MnlI	CCTC	5 cut(s)	125, 506, 509, 600, 619
MroXI	GAANNNNTTC	1 cut(s)	624
MseI	TTAA	4 cut(s)	237, 249, 303, 751
MslI	CAYNNNNRTG	2 cut(s)	276, 303
MspI	CCGG	1 cut(s)	417
MspR9I	CCNGG	1 cut(s)	418
Mva1269I	GAATGC	1 cut(s)	343
MvnI	CGCG	1 cut(s)	96
MwoI	GCNNNNNNNGC	4 cut(s)	148, 230, 347, 569
NciI	CCSGG	1 cut(s)	418
NdeI	CATATG	1 cut(s)	574
NdeII	GATC	2 cut(s)	420, 631
NlaIII	CATG	4 cut(s)	173, 337, 470, 596
NlaIV	GGNNCC	2 cut(s)	81, 422
NspI	RCATGY	1 cut(s)	470
NspV	TTCGAA	1 cut(s)	598
PagI	TCATGA	1 cut(s)	333
PciSI	GCTCTTC	1 cut(s)	180
PctI	GAATGC	1 cut(s)	343
PdmI	GAANNNNTTC	1 cut(s)	624
PfeI	GAWTC	2 cut(s)	308, 655
PkrI	GCNGC	2 cut(s)	223, 324
PpuMI	RGGWCCY	1 cut(s)	80
PshBI	ATTAAT	1 cut(s)	303
PsiI	TTATAA	1 cut(s)	104
Psp124BI	GAGCTC	1 cut(s)	689
Psp5II	RGGWCCY	1 cut(s)	80
PspN4I	GGNNCC	2 cut(s)	81, 422
PspPI	GGNCC	1 cut(s)	80
PspPPI	RGGWCCY	1 cut(s)	80
PsuI	RGATCY	1 cut(s)	420
RsaI	GTAC	1 cut(s)	614
RsaNI	GTAC	1 cut(s)	613
RseI	CAYNNNNRTG	2 cut(s)	276, 303
SacI	GAGCTC	1 cut(s)	689
SapI	GCTCTTC	1 cut(s)	180
SaqAI	TTAA	4 cut(s)	237, 249, 303, 751
SatI	GCNGC	2 cut(s)	222, 323
Sau3AI	GATC	2 cut(s)	420, 631
Sau96I	GGNCC	1 cut(s)	80
ScrFI	CCNGG	1 cut(s)	418
SduI	GDGCHC	1 cut(s)	689
SfaNI	GCATC	4 cut(s)	58, 208, 403, 491
SfuI	TTCGAA	1 cut(s)	598
SinI	GGWCC	1 cut(s)	80
SmiMI	CAYNNNNRTG	2 cut(s)	276, 303
SmlI	CTYRAG	1 cut(s)	688
SmoI	CTYRAG	1 cut(s)	688
Sse9I	AATT	6 cut(s)	73, 86, 472, 506, 679, 704
SsiI	CCGC	2 cut(s)	435, 535
SspMI	CTAG	2 cut(s)	152, 617
SstI	GAGCTC	1 cut(s)	689
StyD4I	CCNGG	1 cut(s)	416
TaaI	ACNGT	3 cut(s)	377, 624, 670
TaqI	TCGA	3 cut(s)	195, 546, 598
TasI	AATT	6 cut(s)	73, 86, 472, 506, 679, 704
TfiI	GAWTC	2 cut(s)	308, 655
Tru1I	TTAA	4 cut(s)	237, 249, 303, 751
Tru9I	TTAA	4 cut(s)	237, 249, 303, 751
TscAI	CASTG	1 cut(s)	217
TseI	GCWGC	2 cut(s)	221, 322
TspDTI	ATGAA	6 cut(s)	80, 321, 350, 573, 591, 732
TspGWI	ACGGA	1 cut(s)	403
TspRI	CASTG	1 cut(s)	217
VpaK11BI	GGWCC	1 cut(s)	80
VspI	ATTAAT	1 cut(s)	303
XapI	RAATTY	4 cut(s)	86, 472, 506, 704
XceI	RCATGY	1 cut(s)	470
XmnI	GAANNNNTTC	1 cut(s)	624
XspI	CTAG	2 cut(s)	152, 617

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.