Rh3BG233200

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
Physical Location & Seq
Reverse (-)
21733422 .. 21742093
8672 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG233200.1

Sequence Viewer

Length: 390 bp
ATGATGCAAACAAACCTAGCATTTCTCAATAATCGAATCAGTGATTTACCAAAGGAGCCCTGTGTGTCCATTGCACTACTGATGCTAGAACTTTCTGTCATCATCCCAGATTGTTTTCTCTTTCCTCTCTTCAAAGAACCAAAGAGAGAATCAGTGGAGTTTCTAGCAATTTGGCTCATGATGATAAAATTTATCAGTGGATCTGTAGACAACAAGAAGGGGGATCTAGAGTTGCAACAGGAGATATACTCAACTACCTTCAGGTTATTTGCATATCACTTGGAGGCTAATCTGCTCTGTCCTCTATTCTCTATCATCTATCTTCCACTTGTCATAGAAAATTCAAGCTCAGTTGTAGGCAATGTTTGTTCACTTTGGTTAATTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

14.75

Weight (kDa)

4.86

Isoelectric Point (pI)

34.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 207
AclWI GGATC 2 cut(s) 208, 231
AcsI RAATTY 2 cut(s) 188, 340
AcuI CTGAAG 1 cut(s) 244
AgsI TTSAA 2 cut(s) 133, 345
AluBI AGCT 1 cut(s) 348
AluI AGCT 1 cut(s) 348
AlwI GGATC 2 cut(s) 208, 231
ApoI RAATTY 2 cut(s) 188, 340
BanII GRGCYC 1 cut(s) 60
BfaI CTAG 4 cut(s) 17, 86, 164, 227
BfmI CTRYAG 1 cut(s) 204
BmiI GGNNCC 1 cut(s) 57
BmsI GCATC 1 cut(s) 72
BplI GAGNNNNNCTC 2 cut(s) 233, 265
Bse3DI GCAATG 2 cut(s) 69, 367
BseGI GGATG 1 cut(s) 102
BseMI GCAATG 2 cut(s) 69, 367
BseMII CTCAG 1 cut(s) 363
Bsp1286I GDGCHC 1 cut(s) 60
Bsp143I GATC 2 cut(s) 200, 223
BspCNI CTCAG 1 cut(s) 362
BspHI TCATGA 1 cut(s) 177
BspLI GGNNCC 1 cut(s) 57
BspPI GGATC 2 cut(s) 208, 231
BsrDI GCAATG 2 cut(s) 69, 367
BssMI GATC 2 cut(s) 200, 223
Bst6I CTCTTC 1 cut(s) 134
BstDEI CTNAG 1 cut(s) 349
BstF5I GGATG 1 cut(s) 102
BstKTI GATC 2 cut(s) 203, 226
BstMBI GATC 2 cut(s) 200, 223
BstSFI CTRYAG 1 cut(s) 204
BstX2I RGATCY 2 cut(s) 200, 223
BstYI RGATCY 2 cut(s) 200, 223
BtsCI GGATG 1 cut(s) 102
BtsIMutI CAGTG 3 cut(s) 46, 159, 202
CciI TCATGA 1 cut(s) 177
CviAII CATG 1 cut(s) 178
CviJI RGCY 4 cut(s) 58, 175, 287, 348
CviKI_1 RGCY 4 cut(s) 58, 175, 287, 348
DdeI CTNAG 1 cut(s) 349
DpnI GATC 2 cut(s) 202, 225
DpnII GATC 2 cut(s) 200, 223
Eam1104I CTCTTC 1 cut(s) 134
EarI CTCTTC 1 cut(s) 134
Eco24I GRGCYC 1 cut(s) 60
Eco57I CTGAAG 1 cut(s) 244
EcoT38I GRGCYC 1 cut(s) 60
FaeI CATG 1 cut(s) 181
FaiI YATR 4 cut(s) 179, 247, 274, 335
FatI CATG 1 cut(s) 177
FblI GTMKAC 1 cut(s) 207
FokI GGATG 1 cut(s) 89
FriOI GRGCYC 1 cut(s) 60
FspBI CTAG 4 cut(s) 17, 86, 164, 227
Hin1II CATG 1 cut(s) 181
HinfI GANTC 2 cut(s) 36, 149
Hpy166II GTNNAC 2 cut(s) 208, 371
Hpy188III TCNNGA 2 cut(s) 178, 227
Hpy8I GTNNAC 2 cut(s) 208, 371
HpyAV CCTTC 2 cut(s) 211, 268
HpyCH4V TGCA 4 cut(s) 7, 74, 235, 272
HpyF3I CTNAG 1 cut(s) 349
Hsp92II CATG 1 cut(s) 181
Kzo9I GATC 2 cut(s) 200, 223
LmnI GCTCC 1 cut(s) 55
LpnPI CCDG 4 cut(s) 73, 120, 224, 247
LweI GCATC 1 cut(s) 72
MaeI CTAG 4 cut(s) 17, 86, 164, 227
MalI GATC 2 cut(s) 202, 225
MboI GATC 2 cut(s) 200, 223
MboII GAAGA 2 cut(s) 121, 314
MflI RGATCY 2 cut(s) 200, 223
MhlI GDGCHC 1 cut(s) 60
MluCI AATT 4 cut(s) 168, 188, 340, 381
MnlI CCTC 3 cut(s) 135, 277, 312
MseI TTAA 1 cut(s) 380
NdeII GATC 2 cut(s) 200, 223
NlaIII CATG 1 cut(s) 181
NlaIV GGNNCC 1 cut(s) 57
PagI TCATGA 1 cut(s) 177
PfeI GAWTC 2 cut(s) 36, 149
PspN4I GGNNCC 1 cut(s) 57
PsuI RGATCY 2 cut(s) 200, 223
SaqAI TTAA 1 cut(s) 380
Sau3AI GATC 2 cut(s) 200, 223
SduI GDGCHC 1 cut(s) 60
SetI ASST 4 cut(s) 18, 260, 266, 350
SfaNI GCATC 1 cut(s) 72
SfcI CTRYAG 1 cut(s) 204
Sse9I AATT 4 cut(s) 168, 188, 340, 381
SspMI CTAG 4 cut(s) 17, 86, 164, 227
TaqI TCGA 1 cut(s) 34
TasI AATT 4 cut(s) 168, 188, 340, 381
TfiI GAWTC 2 cut(s) 36, 149
Tru1I TTAA 1 cut(s) 380
Tru9I TTAA 1 cut(s) 380
TscAI CASTG 3 cut(s) 46, 159, 202
TspRI CASTG 3 cut(s) 46, 159, 202
XapI RAATTY 2 cut(s) 188, 340
XbaI TCTAGA 1 cut(s) 226
XmiI GTMKAC 1 cut(s) 207
XspI CTAG 4 cut(s) 17, 86, 164, 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.