Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0000613

Physical Location & Seq

Genomic Coordinates Forward (+)

50020048 .. 50021871

Gene Structure 1824 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00429800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGAAGTTGGTCAAGGGGACAACCAATCTTGCATTTGTATATGAAGGAGGCATCATGATGGGCACAGATTCGAGGACCACATCTTGCTATATGCATAATGGCAATATACAAGGAAATATAATTACAGACGAGAAAGAAAAAATTAAGAAGCTATCTTCCCACATCAACTTATTGTGCACATCTATGGGGCAAATTGATGATTGGGAGAAAATGTACCGTTATGTGTGTCGGAATGGTTTTCAAATTCGTAGTGTTACTCTTCCGGGCTACAATATTCTCGAAAGCAACCCCGATGCAACATTTTTAACACTAGGGTCCGGTGAGGATGAAGCGTACGAAATTTTGAACTCAGCAAACACATATGCGTATATGACTAGAGAACGTGCATATGACTTGGCTTTTCATGCCTTATTTTACGCAACTTTATTGGATAAGTACTCTGGTGGAACTCTAAAAGTGATACATCTGTCTAAGACCACTTCTTCTCTCGAGACCCGCAATGCTTTGCAAGTCTACCCCAAATTTTATAACCTTATGCCTAGAGTTGCAAGTGACGTTCATAGCAGAACATTTTTCGTGCTTTATCCTACGAATTCCTATTCCAAACTTGTGTGGGAAGGTGATGGCCTTGAAGAGCTCATCCTCAGAGTCTGGCCAAAGGGAGATGTAGACGTACAACAGCACCTACAAGCAAGCCATTTTGTAGCAAAGAAGTACGATTTCTACTTTCACCGTTTCGTGTTCAACCAAGTAAACAAGGCTGTACAAGCATACAATACTATCACTACCATAGCTCCTCCCCAACGTCATAACGCTATAGAAGATTATTTCCAAGGTAATTTCATACGTTCTGGCAGCCAAAGGAAGCCCGTATATATTGGATGGAGCTCACAGGACTTGTTGCAACGCATCTGTAACATGAAGGATGCTAAAAGTCATGGTTCTGCCAGTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0002376 GO:0003674 GO:0003824 GO:0004175 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005813 GO:0005815 GO:0005829 GO:0005839 GO:0005856 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010498 GO:0015630 GO:0016579 GO:0016787 GO:0019221 GO:0019222 GO:0019538 GO:0019774 GO:0019882 GO:0019941 GO:0023052 GO:0030154 GO:0030162 GO:0030163 GO:0031974 GO:0031981 GO:0032502 GO:0032991 GO:0034097 GO:0034340 GO:0036211 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043632 GO:0043687 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0045444 GO:0048869 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051246 GO:0051336 GO:0051603 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0060337 GO:0065007 GO:0065009 GO:0070011 GO:0070013 GO:0070646 GO:0070647 GO:0070887 GO:0071310 GO:0071345 GO:0071357 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369 GO:1990111

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

Proteasome

Protein Analysis

318

Amino Acids

36.34

Weight (kDa)

8.67

Isoelectric Point (pI)

46.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000613)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13060 AT1G13060 AT1G13060 AT3G26340
fragaria_vesca	FvH4_1g01201 FvH4_4g24020 FvH4_6g30500
malus_domestica	MD10G1030600.v1.1 MD16G1116800.v1.1
prunus_persica	Prupe.1G229300_v2.0.a1 Prupe.1G229300_v2.0.a1 Prupe.1G229300_v2.0.a1
pyrus_communis	pycom10g01980 pycom13g10110
rosa_chinensis	RchiOBHm_Chr4g0430701 RchiOBHm_Chr5g0003071
rosa_laevigata	RLG00000006954 RLG00000031090 RLG00000031094 RLG00000031099 RLG00000031107 RLG00000031108 RLG00000031111 RLG00000031116 RLG00000032188
rosa_multiflora	Rmu_sc0000131.1_g000009 Rmu_sc0000146.1_g000015 Rmu_sc0002209.1_g000027
rosa_roxburghii	Rroxscaffold_1G00061170 Rroxscaffold_1G00061240 Rroxscaffold_1G00061300 Rroxscaffold_1G00072510 Rroxscaffold_1G00072750 Rroxscaffold_1G00072760 Rroxscaffold_5G00372440 Rroxscaffold_6G00429800 Rroxscaffold_6G00429810 Rroxscaffold_6G00429820 Rroxscaffold_6G00429850
rosa_rugosa	Rorug04G0245300 Rorug04G0402100 Rorug04G0402100 Rorug04G0402100 Rorug05G0025600 Rorug05G0026200
rosa_samantha	Rh3BG233200 Rh3DG047000 Rh3DG047300 Rh3DG047400 Rh3DG047800 Rh4AG053100 Rh4AG227500 Rh4BG230300 Rh4BG309300 Rh4CG242400 Rh4DG160600 Rh4DG225800 Rh5AG024300 Rh5AG024400 Rh5AG024700 Rh5AG027100 Rh5AG119900 Rh5BG118400 Rh5CG027100 Rh5CG027300 Rh5CG027700 Rh5CG128900 Rh5DG026900 Rh5DG027000 Rh5DG027700 Rh5DG028000 Rh5DG028500
rosa_wichuraiana	Rw0G010900 Rw3G003590 Rw4G026180 Rw5G002310 Rw5G002480 Rw5G002600 Rw5G010340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	528
AccI	GTMKAC	2 cut(s)	513, 669
AciI	CCGC	1 cut(s)	496
AcoI	YGGCCR	1 cut(s)	653
AcsI	RAATTY	4 cut(s)	243, 339, 521, 592
AfaI	GTAC	6 cut(s)	215, 335, 437, 675, 716, 765
AgsI	TTSAA	4 cut(s)	242, 346, 632, 745
AluBI	AGCT	4 cut(s)	151, 637, 794, 888
AluI	AGCT	4 cut(s)	151, 637, 794, 888
Alw21I	GWGCWC	3 cut(s)	179, 639, 890
Alw26I	GTCTC	1 cut(s)	485
Alw44I	GTGCAC	1 cut(s)	175
AlwNI	CAGNNNCTG	1 cut(s)	651
Ama87I	CYCGRG	1 cut(s)	488
AoxI	GGCC	2 cut(s)	625, 653
ApaLI	GTGCAC	1 cut(s)	175
ApeKI	GCWGC	1 cut(s)	855
ApoI	RAATTY	4 cut(s)	243, 339, 521, 592
AspS9I	GGNCC	2 cut(s)	75, 315
AsuC2I	CCSGG	1 cut(s)	264
AsuHPI	GGTGA	3 cut(s)	332, 632, 722
AvaI	CYCGRG	1 cut(s)	488
AvaII	GGWCC	2 cut(s)	75, 315
BaeGI	GKGCMC	2 cut(s)	65, 179
BaeI	ACNNNNGTAYC	2 cut(s)	452, 485
BalI	TGGCCA	1 cut(s)	655
BanII	GRGCYC	2 cut(s)	639, 890
Bbv12I	GWGCWC	3 cut(s)	179, 639, 890
BbvI	GCAGC	1 cut(s)	867
BccI	CCATC	3 cut(s)	52, 617, 876
BcnI	CCSGG	1 cut(s)	264
BcoDI	GTCTC	1 cut(s)	485
BfaI	CTAG	3 cut(s)	311, 375, 540
BfmI	CTRYAG	1 cut(s)	816
BisI	GCNGC	1 cut(s)	856
BlsI	GCNGC	1 cut(s)	857
BmcAI	AGTACT	1 cut(s)	437
Bme1390I	CCNGG	1 cut(s)	264
Bme18I	GGWCC	2 cut(s)	75, 315
BmeT110I	CYCGRG	1 cut(s)	488
BmgT120I	GGNCC	2 cut(s)	75, 315
BmiI	GGNNCC	1 cut(s)	316
BmrFI	CCNGG	1 cut(s)	264
BmsI	GCATC	4 cut(s)	60, 283, 916, 918
BpuMI	CCSGG	1 cut(s)	264
BsaI	GGTCTC	1 cut(s)	485
BsaJI	CCNNGG	1 cut(s)	832
BsaWI	WCCGGW	1 cut(s)	317
BsaXI	ACNNNNNCTCC	4 cut(s)	197, 227, 778, 808
Bse1I	ACTGG	1 cut(s)	948
Bse3DI	GCAATG	1 cut(s)	505
BseDI	CCNNGG	1 cut(s)	832
BseGI	GGATG	4 cut(s)	331, 639, 887, 931
BseMI	GCAATG	1 cut(s)	505
BseMII	CTCAG	2 cut(s)	363, 658
BseNI	ACTGG	1 cut(s)	948
BseRI	GAGGAG	1 cut(s)	786
BseSI	GKGCMC	2 cut(s)	65, 179
BseXI	GCAGC	1 cut(s)	867
BshFI	GGCC	2 cut(s)	627, 655
BsiHKAI	GWGCWC	3 cut(s)	179, 639, 890
BsiHKCI	CYCGRG	1 cut(s)	488
BsiSI	CCGG	2 cut(s)	263, 318
BsiWI	CGTACG	1 cut(s)	333
BslFI	GGGAC	1 cut(s)	31
BsmAI	GTCTC	1 cut(s)	485
BsmFI	GGGAC	1 cut(s)	31
BsnI	GGCC	2 cut(s)	627, 655
Bso31I	GGTCTC	1 cut(s)	485
BsoBI	CYCGRG	1 cut(s)	488
Bsp1286I	GDGCHC	4 cut(s)	65, 179, 639, 890
Bsp1407I	TGTACA	1 cut(s)	763
BspACI	CCGC	1 cut(s)	496
BspANI	GGCC	2 cut(s)	627, 655
BspCNI	CTCAG	2 cut(s)	362, 657
BspHI	TCATGA	1 cut(s)	54
BspLI	GGNNCC	1 cut(s)	316
BspQI	GCTCTTC	1 cut(s)	627
BspTNI	GGTCTC	1 cut(s)	485
BsrDI	GCAATG	1 cut(s)	505
BsrGI	TGTACA	1 cut(s)	763
BsrI	ACTGG	1 cut(s)	948
BssECI	CCNNGG	1 cut(s)	832
BssT1I	CCWWGG	1 cut(s)	832
Bst4CI	ACNGT	2 cut(s)	218, 734
Bst6I	CTCTTC	2 cut(s)	264, 627
BstAUI	TGTACA	1 cut(s)	763
BstC8I	GCNNGC	1 cut(s)	694
BstDEI	CTNAG	3 cut(s)	349, 471, 644
BstF5I	GGATG	4 cut(s)	331, 639, 887, 931
BstMAI	GTCTC	1 cut(s)	485
BstMWI	GCNNNNNNNGC	2 cut(s)	404, 767
BstSCI	CCNGG	1 cut(s)	262
BstSFI	CTRYAG	1 cut(s)	816
BstSLI	GKGCMC	2 cut(s)	65, 179
BstV1I	GCAGC	1 cut(s)	867
BsuRI	GGCC	2 cut(s)	627, 655
BtsCI	GGATG	4 cut(s)	331, 639, 887, 931
Cac8I	GCNNGC	1 cut(s)	694
CaiI	CAGNNNCTG	1 cut(s)	651
CciI	TCATGA	1 cut(s)	54
Cfr13I	GGNCC	2 cut(s)	75, 315
Csp6I	GTAC	6 cut(s)	214, 334, 436, 674, 715, 764
CviAII	CATG	4 cut(s)	55, 404, 919, 938
CviQI	GTAC	6 cut(s)	214, 334, 436, 674, 715, 764
DdeI	CTNAG	3 cut(s)	349, 471, 644
EaeI	YGGCCR	1 cut(s)	653
Eam1104I	CTCTTC	2 cut(s)	264, 627
EarI	CTCTTC	2 cut(s)	264, 627
Ecl136II	GAGCTC	2 cut(s)	637, 888
Eco130I	CCWWGG	1 cut(s)	832
Eco24I	GRGCYC	2 cut(s)	639, 890
Eco31I	GGTCTC	1 cut(s)	485
Eco47I	GGWCC	2 cut(s)	75, 315
Eco53kI	GAGCTC	2 cut(s)	637, 888
Eco88I	CYCGRG	1 cut(s)	488
EcoICRI	GAGCTC	2 cut(s)	637, 888
EcoRI	GAATTC	1 cut(s)	592
EcoT14I	CCWWGG	1 cut(s)	832
EcoT22I	ATGCAT	1 cut(s)	96
EcoT38I	GRGCYC	2 cut(s)	639, 890
ErhI	CCWWGG	1 cut(s)	832
FaeI	CATG	4 cut(s)	58, 407, 922, 941
FaqI	GGGAC	1 cut(s)	31
FatI	CATG	4 cut(s)	54, 403, 918, 937
FauI	CCCGC	1 cut(s)	503
FauNDI	CATATG	2 cut(s)	361, 388
FblI	GTMKAC	2 cut(s)	513, 669
Fnu4HI	GCNGC	1 cut(s)	856
FokI	GGATG	4 cut(s)	338, 626, 894, 938
FriOI	GRGCYC	2 cut(s)	639, 890
Fsp4HI	GCNGC	1 cut(s)	856
FspBI	CTAG	3 cut(s)	311, 375, 540
GluI	GCNGC	1 cut(s)	856
HaeIII	GGCC	2 cut(s)	627, 655
HapII	CCGG	2 cut(s)	263, 318
Hin1II	CATG	4 cut(s)	58, 407, 922, 941
HinfI	GANTC	2 cut(s)	68, 648
HpaII	CCGG	2 cut(s)	263, 318
HphI	GGTGA	3 cut(s)	332, 632, 722
Hpy166II	GTNNAC	4 cut(s)	177, 514, 670, 754
Hpy188I	TCNGA	2 cut(s)	231, 647
Hpy188III	TCNNGA	4 cut(s)	55, 278, 488, 490
Hpy8I	GTNNAC	4 cut(s)	177, 514, 670, 754
HpyAV	CCTTC	3 cut(s)	38, 611, 916
HpyCH4III	ACNGT	2 cut(s)	218, 734
HpyCH4IV	ACGT	5 cut(s)	382, 555, 672, 805, 847
HpyCH4V	TGCA	8 cut(s)	32, 94, 177, 296, 386, 508, 548, 904
HpyF10VI	GCNNNNNNNGC	2 cut(s)	404, 767
HpyF3I	CTNAG	3 cut(s)	349, 471, 644
HpySE526I	ACGT	5 cut(s)	382, 555, 672, 805, 847
Hsp92II	CATG	4 cut(s)	58, 407, 922, 941
LguI	GCTCTTC	1 cut(s)	627
LmnI	GCTCC	2 cut(s)	799, 885
LpnPI	CCDG	6 cut(s)	276, 331, 426, 637, 837, 878
Lsp1109I	GCAGC	1 cut(s)	867
LweI	GCATC	4 cut(s)	60, 283, 916, 918
MaeI	CTAG	3 cut(s)	311, 375, 540
MaeII	ACGT	5 cut(s)	382, 555, 672, 805, 847
MaeIII	GTNAC	3 cut(s)	253, 551, 914
MboII	GAAGA	5 cut(s)	147, 251, 474, 644, 833
MhlI	GDGCHC	4 cut(s)	65, 179, 639, 890
MlsI	TGGCCA	1 cut(s)	655
MluCI	AATT	8 cut(s)	120, 141, 192, 243, 339, 521, 592, 838
MluNI	TGGCCA	1 cut(s)	655
MlyI	GAGTC	1 cut(s)	657
MmeI	TCCRAC	1 cut(s)	209
MnlI	CCTC	5 cut(s)	41, 66, 316, 653, 807
Mox20I	TGGCCA	1 cut(s)	655
Mph1103I	ATGCAT	1 cut(s)	96
MscI	TGGCCA	1 cut(s)	655
MseI	TTAA	2 cut(s)	144, 305
MslI	CAYNNNNRTG	2 cut(s)	56, 182
Msp20I	TGGCCA	1 cut(s)	655
MspI	CCGG	2 cut(s)	263, 318
MspR9I	CCNGG	1 cut(s)	264
MwoI	GCNNNNNNNGC	2 cut(s)	404, 767
NciI	CCSGG	1 cut(s)	264
NdeI	CATATG	2 cut(s)	361, 388
NlaIII	CATG	4 cut(s)	58, 407, 922, 941
NlaIV	GGNNCC	1 cut(s)	316
NmuCI	GTSAC	1 cut(s)	551
NsiI	ATGCAT	1 cut(s)	96
PaeR7I	CTCGAG	1 cut(s)	488
PagI	TCATGA	1 cut(s)	54
PciSI	GCTCTTC	1 cut(s)	627
PfeI	GAWTC	1 cut(s)	68
Pfl23II	CGTACG	1 cut(s)	333
PkrI	GCNGC	1 cut(s)	857
PleI	GAGTC	1 cut(s)	656
PpsI	GAGTC	1 cut(s)	656
PsiI	TTATAA	1 cut(s)	528
Psp124BI	GAGCTC	2 cut(s)	639, 890
PspLI	CGTACG	1 cut(s)	333
PspN4I	GGNNCC	1 cut(s)	316
PspPI	GGNCC	2 cut(s)	75, 315
PstNI	CAGNNNCTG	1 cut(s)	651
RsaI	GTAC	6 cut(s)	215, 335, 437, 675, 716, 765
RsaNI	GTAC	6 cut(s)	214, 334, 436, 674, 715, 764
RseI	CAYNNNNRTG	2 cut(s)	56, 182
SacI	GAGCTC	2 cut(s)	639, 890
SapI	GCTCTTC	1 cut(s)	627
SaqAI	TTAA	2 cut(s)	144, 305
SatI	GCNGC	1 cut(s)	856
Sau96I	GGNCC	2 cut(s)	75, 315
ScaI	AGTACT	1 cut(s)	437
SchI	GAGTC	1 cut(s)	657
ScrFI	CCNGG	1 cut(s)	264
SduI	GDGCHC	4 cut(s)	65, 179, 639, 890
SfaNI	GCATC	4 cut(s)	60, 283, 916, 918
SfcI	CTRYAG	1 cut(s)	816
Sfr274I	CTCGAG	1 cut(s)	488
SinI	GGWCC	2 cut(s)	75, 315
SlaI	CTCGAG	1 cut(s)	488
SmiMI	CAYNNNNRTG	2 cut(s)	56, 182
SmlI	CTYRAG	1 cut(s)	488
SmoI	CTYRAG	1 cut(s)	488
Sse9I	AATT	8 cut(s)	120, 141, 192, 243, 339, 521, 592, 838
SsiI	CCGC	1 cut(s)	496
SspI	AATATT	1 cut(s)	274
SspMI	CTAG	3 cut(s)	311, 375, 540
SstI	GAGCTC	2 cut(s)	639, 890
StyD4I	CCNGG	1 cut(s)	262
StyI	CCWWGG	1 cut(s)	832
TaaI	ACNGT	2 cut(s)	218, 734
TaiI	ACGT	5 cut(s)	385, 558, 675, 808, 850
TaqI	TCGA	3 cut(s)	71, 279, 489
TasI	AATT	8 cut(s)	120, 141, 192, 243, 339, 521, 592, 838
TatI	WGTACW	2 cut(s)	435, 763
TfiI	GAWTC	1 cut(s)	68
Tru1I	TTAA	2 cut(s)	144, 305
Tru9I	TTAA	2 cut(s)	144, 305
TseFI	GTSAC	1 cut(s)	551
TseI	GCWGC	1 cut(s)	855
Tsp45I	GTSAC	1 cut(s)	551
TspDTI	ATGAA	7 cut(s)	17, 57, 342, 392, 548, 832, 935
VneI	GTGCAC	1 cut(s)	175
VpaK11BI	GGWCC	2 cut(s)	75, 315
XapI	RAATTY	4 cut(s)	243, 339, 521, 592
XhoI	CTCGAG	1 cut(s)	488
XmiI	GTMKAC	2 cut(s)	513, 669
XspI	CTAG	3 cut(s)	311, 375, 540
ZrmI	AGTACT	1 cut(s)	437
Zsp2I	ATGCAT	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.