RLG00000031090

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000613
Physical Location & Seq
Reverse (-)
1911019 .. 1912736
1718 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031090

Sequence Viewer

Length: 1062 bp
ATGGGTTGTGGGGCTTCAAAATACTCTTCGGAAGGATCAGAAAGCAGGAAATTTGAGAATACGTCACTAGCTTTGGACCATAAACTCAAGGGGACGACACTTATTGGTTTTGTTTACCGTGAGGGCATCATAGTTGGAGCTGAATCTAGGGCTTCTAATGAATATGATGAGCTTCTATATCCGCTTACAATTCGAGACAACAGACCCAAAATGGCTCAAATATCTTCCCACATGATTTACGTAGTTCAAGGGGTAGAGGCTGATTGTACACAAATGAGGTTGCATATAAGTGAGAAGTTTCCGAACATAGATGAACATCTTGGCAATGCACCTACAGTTTCATGTGTAGTAGAAACGGTGTATAAGTATCTGAACAGTCTCGATGACAAGGATAAAGGTCCTCAAGTTCATCGTGTTTTTCTGAAAAACAAAAAGGTTGTGCAAGAAAGAGCTTGTATGCCTGCAGCGCTAGGAAGTGGTCAAGTTCATGCTCTTCGTATCCTTAATAAAAGTTACAAGTACAATATGTCCACTGCTGATGCTATTGATTTGGCACGTAAAGCTTTATTTAATGCAACCAACTATGACAAGCATAGTGGTGGAGAACTGAAAGTTTATCACATTAATAATTCTGGATGGGAGCCGCTACCTATCATGAATGCTTTGGAAGCTTACACAAGATATTACGACCTTCACCGTCGCTATGAACGGAAAACGCTTTTCTTGGTTGTGGATGCCGGGATCCAACCTATTTCTGCAAATGACCTTATAGAACACTTCAAGCCACATGCAAAGTTATTCGCATCCCATCGTGTAGCCCTCTGTAAATTGGGAGGTGATCGCCTCTACTTCCACCGCCTTGTGTTCGAGTCTGACGATGATGCAGAAAGGGCATATGAAACTACAACTCCTCATGGTCGAACTACTCCCTCGTACCTAGAACGGTTTCCAGATCAAGTGGTCTTGGATAATAAGAATCCAAGTGTTACAGTTTATGTGAATTGGAGCTCAAGGGATTTGCTGGAATTTGTACACGATGAATGTCAGTTATTATATAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03050 map03050
Pfam Domains
Protein Families
Proteasome

Protein Analysis

354

Amino Acids

40.23

Weight (kDa)

6.95

Isoelectric Point (pI)

32.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Proteasome PF00227 30 - 123 5.7e-06 Proteasome subunit
Proteasome PF00227 154 - 208 6.6e-08 Proteasome subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 182, 644, 856
AclWI GGATC 3 cut(s) 43, 736, 749
AcsI RAATTY 2 cut(s) 50, 1025
AfaI GTAC 4 cut(s) 268, 521, 935, 1032
AfeI AGCGCT 1 cut(s) 468
AgsI TTSAA 3 cut(s) 18, 248, 781
AluBI AGCT 7 cut(s) 71, 140, 172, 452, 563, 671, 1008
AluI AGCT 7 cut(s) 71, 140, 172, 452, 563, 671, 1008
Alw21I GWGCWC 1 cut(s) 1010
Alw26I GTCTC 2 cut(s) 189, 383
AlwI GGATC 3 cut(s) 43, 736, 749
Aor51HI AGCGCT 1 cut(s) 468
ApeKI GCWGC 1 cut(s) 464
ApoI RAATTY 2 cut(s) 50, 1025
AseI ATTAAT 1 cut(s) 624
Asp700I GAANNNNTTC 1 cut(s) 945
AspLEI GCGC 1 cut(s) 469
AspS9I GGNCC 2 cut(s) 76, 398
AsuC2I CCSGG 1 cut(s) 739
AsuHPI GGTGA 2 cut(s) 686, 848
AvaII GGWCC 2 cut(s) 76, 398
BamHI GGATCC 1 cut(s) 741
BanII GRGCYC 1 cut(s) 1010
Bbv12I GWGCWC 1 cut(s) 1010
BbvI GCAGC 1 cut(s) 476
BccI CCATC 2 cut(s) 630, 816
BciVI GTATCC 1 cut(s) 509
BcnI CCSGG 1 cut(s) 739
BcoDI GTCTC 2 cut(s) 189, 383
BfaI CTAG 4 cut(s) 68, 147, 470, 938
BfmI CTRYAG 2 cut(s) 333, 462
BfoI RGCGCY 1 cut(s) 470
BfuI GTATCC 1 cut(s) 509
BisI GCNGC 2 cut(s) 465, 644
BlsI GCNGC 2 cut(s) 466, 645
Bme1390I CCNGG 1 cut(s) 739
Bme18I GGWCC 2 cut(s) 76, 398
BmgT120I GGNCC 2 cut(s) 76, 398
BmiI GGNNCC 2 cut(s) 642, 743
BmrFI CCNGG 1 cut(s) 739
BmsI GCATC 5 cut(s) 135, 529, 724, 812, 871
BpuEI CTTGAG 3 cut(s) 71, 387, 994
BpuMI CCSGG 1 cut(s) 739
BsaAI YACGTR 2 cut(s) 241, 557
BsaBI GATNNNNATC 1 cut(s) 315
BsaXI ACNNNNNCTCC 2 cut(s) 892, 922
Bse3DI GCAATG 1 cut(s) 331
Bse8I GATNNNNATC 1 cut(s) 315
BseGI GGATG 3 cut(s) 641, 739, 803
BseJI GATNNNNATC 1 cut(s) 315
BseMI GCAATG 1 cut(s) 331
BseRI GAGGAG 1 cut(s) 900
BseXI GCAGC 1 cut(s) 476
BsiHKAI GWGCWC 1 cut(s) 1010
BsiSI CCGG 1 cut(s) 738
BslFI GGGAC 1 cut(s) 106
BsmAI GTCTC 2 cut(s) 189, 383
BsmFI GGGAC 1 cut(s) 106
BsmI GAATGC 1 cut(s) 664
Bsp1286I GDGCHC 1 cut(s) 1010
Bsp1407I TGTACA 2 cut(s) 266, 1030
Bsp143I GATC 4 cut(s) 35, 741, 838, 952
BspACI CCGC 3 cut(s) 182, 644, 856
BspHI TCATGA 1 cut(s) 654
BspLI GGNNCC 2 cut(s) 642, 743
BspMAI CTGCAG 1 cut(s) 466
BspPI GGATC 3 cut(s) 43, 736, 749
BspQI GCTCTTC 1 cut(s) 498
BsrDI GCAATG 1 cut(s) 331
BsrGI TGTACA 2 cut(s) 266, 1030
BssMI GATC 4 cut(s) 35, 741, 838, 952
Bst4CI ACNGT 7 cut(s) 119, 337, 358, 377, 698, 945, 991
Bst6I CTCTTC 2 cut(s) 31, 498
BstAUI TGTACA 2 cut(s) 266, 1030
BstBAI YACGTR 2 cut(s) 241, 557
BstC8I GCNNGC 1 cut(s) 462
BstF5I GGATG 3 cut(s) 641, 739, 803
BstH2I RGCGCY 1 cut(s) 470
BstHHI GCGC 1 cut(s) 469
BstKTI GATC 4 cut(s) 38, 744, 841, 955
BstMAI GTCTC 2 cut(s) 189, 383
BstMBI GATC 4 cut(s) 35, 741, 838, 952
BstMWI GCNNNNNNNGC 4 cut(s) 466, 560, 668, 890
BstNSI RCATGY 1 cut(s) 791
BstSCI CCNGG 1 cut(s) 737
BstSFI CTRYAG 2 cut(s) 333, 462
BstSNI TACGTA 1 cut(s) 241
BstV1I GCAGC 1 cut(s) 476
BstX2I RGATCY 1 cut(s) 741
BstYI RGATCY 1 cut(s) 741
BsuI GTATCC 1 cut(s) 509
BtsCI GGATG 3 cut(s) 641, 739, 803
BtsI GCAGTG 1 cut(s) 531
BtsIMutI CAGTG 1 cut(s) 531
Cac8I GCNNGC 1 cut(s) 462
CciI TCATGA 1 cut(s) 654
CfoI GCGC 1 cut(s) 469
Cfr13I GGNCC 2 cut(s) 76, 398
Csp6I GTAC 4 cut(s) 267, 520, 934, 1031
CspCI CAANNNNNGTGG 2 cut(s) 577, 612
CviAII CATG 6 cut(s) 232, 342, 488, 655, 788, 914
CviQI GTAC 4 cut(s) 267, 520, 934, 1031
DpnI GATC 4 cut(s) 37, 743, 840, 954
DpnII GATC 4 cut(s) 35, 741, 838, 952
Eam1104I CTCTTC 2 cut(s) 31, 498
EarI CTCTTC 2 cut(s) 31, 498
Ecl136II GAGCTC 1 cut(s) 1008
Eco105I TACGTA 1 cut(s) 241
Eco24I GRGCYC 1 cut(s) 1010
Eco47I GGWCC 2 cut(s) 76, 398
Eco47III AGCGCT 1 cut(s) 468
Eco53kI GAGCTC 1 cut(s) 1008
EcoICRI GAGCTC 1 cut(s) 1008
EcoO109I RGGNCCY 1 cut(s) 398
EcoT38I GRGCYC 1 cut(s) 1010
FaeI CATG 6 cut(s) 235, 345, 491, 658, 791, 917
FaqI GGGAC 1 cut(s) 106
FatI CATG 6 cut(s) 231, 341, 487, 654, 787, 913
FauNDI CATATG 1 cut(s) 895
Fnu4HI GCNGC 2 cut(s) 465, 644
FokI GGATG 3 cut(s) 648, 746, 790
FriOI GRGCYC 1 cut(s) 1010
Fsp4HI GCNGC 2 cut(s) 465, 644
FspBI CTAG 4 cut(s) 68, 147, 470, 938
GlaI GCGC 1 cut(s) 468
GluI GCNGC 2 cut(s) 465, 644
HaeII RGCGCY 1 cut(s) 470
HapII CCGG 1 cut(s) 738
HhaI GCGC 1 cut(s) 469
Hin1II CATG 6 cut(s) 235, 345, 491, 658, 791, 917
Hin6I GCGC 1 cut(s) 467
HinP1I GCGC 1 cut(s) 467
HindIII AAGCTT 2 cut(s) 561, 669
HinfI GANTC 3 cut(s) 143, 869, 976
HpaII CCGG 1 cut(s) 738
HphI GGTGA 2 cut(s) 686, 848
Hpy166II GTNNAC 4 cut(s) 115, 269, 531, 1033
Hpy188I TCNGA 6 cut(s) 31, 40, 303, 372, 423, 874
Hpy188III TCNNGA 5 cut(s) 194, 380, 633, 655, 950
Hpy8I GTNNAC 4 cut(s) 115, 269, 531, 1033
Hpy99I CGWCG 1 cut(s) 702
HpyAV CCTTC 2 cut(s) 26, 701
HpyCH4III ACNGT 7 cut(s) 119, 337, 358, 377, 698, 945, 991
HpyCH4IV ACGT 3 cut(s) 62, 240, 556
HpyCH4V TGCA 8 cut(s) 283, 329, 442, 464, 575, 758, 791, 884
HpyF10VI GCNNNNNNNGC 4 cut(s) 466, 560, 668, 890
HpySE526I ACGT 3 cut(s) 62, 240, 556
Hsp92II CATG 6 cut(s) 235, 345, 491, 658, 791, 917
HspAI GCGC 1 cut(s) 467
Kzo9I GATC 4 cut(s) 35, 741, 838, 952
LguI GCTCTTC 1 cut(s) 498
LmnI GCTCC 3 cut(s) 137, 640, 1005
LpnPI CCDG 6 cut(s) 31, 474, 618, 751, 963, 1007
Lsp1109I GCAGC 1 cut(s) 476
LweI GCATC 5 cut(s) 135, 529, 724, 812, 871
MaeI CTAG 4 cut(s) 68, 147, 470, 938
MaeII ACGT 3 cut(s) 62, 240, 556
MaeIII GTNAC 3 cut(s) 63, 512, 985
MalI GATC 4 cut(s) 37, 743, 840, 954
MboI GATC 4 cut(s) 35, 741, 838, 952
MboII GAAGA 3 cut(s) 18, 216, 485
MflI RGATCY 1 cut(s) 741
MhlI GDGCHC 1 cut(s) 1010
MluCI AATT 6 cut(s) 50, 189, 628, 827, 1000, 1025
MlyI GAGTC 1 cut(s) 878
MmeI TCCRAC 2 cut(s) 115, 769
MnlI CCTC 9 cut(s) 115, 250, 270, 411, 827, 830, 854, 921, 940
MroXI GAANNNNTTC 1 cut(s) 945
MseI TTAA 3 cut(s) 504, 570, 624
MslI CAYNNNNRTG 2 cut(s) 288, 597
MspI CCGG 1 cut(s) 738
MspR9I CCNGG 1 cut(s) 739
Mva1269I GAATGC 1 cut(s) 664
MwoI GCNNNNNNNGC 4 cut(s) 466, 560, 668, 890
NciI CCSGG 1 cut(s) 739
NdeI CATATG 1 cut(s) 895
NdeII GATC 4 cut(s) 35, 741, 838, 952
NlaIII CATG 6 cut(s) 235, 345, 491, 658, 791, 917
NlaIV GGNNCC 2 cut(s) 642, 743
NmuCI GTSAC 1 cut(s) 63
NspI RCATGY 1 cut(s) 791
PagI TCATGA 1 cut(s) 654
PciSI GCTCTTC 1 cut(s) 498
PcsI WCGNNNNNNNCGW 1 cut(s) 873
PctI GAATGC 1 cut(s) 664
PdmI GAANNNNTTC 1 cut(s) 945
PfeI GAWTC 2 cut(s) 143, 976
PkrI GCNGC 2 cut(s) 466, 645
PleI GAGTC 1 cut(s) 877
PpsI GAGTC 1 cut(s) 877
Ppu21I YACGTR 2 cut(s) 241, 557
PpuMI RGGWCCY 1 cut(s) 398
PshBI ATTAAT 1 cut(s) 624
Psp124BI GAGCTC 1 cut(s) 1010
Psp5II RGGWCCY 1 cut(s) 398
PspN4I GGNNCC 2 cut(s) 642, 743
PspPI GGNCC 2 cut(s) 76, 398
PspPPI RGGWCCY 1 cut(s) 398
PstI CTGCAG 1 cut(s) 466
PsuI RGATCY 1 cut(s) 741
RsaI GTAC 4 cut(s) 268, 521, 935, 1032
RsaNI GTAC 4 cut(s) 267, 520, 934, 1031
RseI CAYNNNNRTG 2 cut(s) 288, 597
SacI GAGCTC 1 cut(s) 1010
SapI GCTCTTC 1 cut(s) 498
SaqAI TTAA 3 cut(s) 504, 570, 624
SatI GCNGC 2 cut(s) 465, 644
Sau3AI GATC 4 cut(s) 35, 741, 838, 952
Sau96I GGNCC 2 cut(s) 76, 398
SchI GAGTC 1 cut(s) 878
ScrFI CCNGG 1 cut(s) 739
SduI GDGCHC 1 cut(s) 1010
SfaNI GCATC 5 cut(s) 135, 529, 724, 812, 871
SfcI CTRYAG 2 cut(s) 333, 462
SinI GGWCC 2 cut(s) 76, 398
SmiMI CAYNNNNRTG 2 cut(s) 288, 597
SmlI CTYRAG 3 cut(s) 86, 402, 1009
SmoI CTYRAG 3 cut(s) 86, 402, 1009
SnaBI TACGTA 1 cut(s) 241
Sse9I AATT 6 cut(s) 50, 189, 628, 827, 1000, 1025
SsiI CCGC 3 cut(s) 182, 644, 856
SspMI CTAG 4 cut(s) 68, 147, 470, 938
SstI GAGCTC 1 cut(s) 1010
StyD4I CCNGG 1 cut(s) 737
TaaI ACNGT 7 cut(s) 119, 337, 358, 377, 698, 945, 991
TaiI ACGT 3 cut(s) 65, 243, 559
TaqI TCGA 4 cut(s) 193, 381, 867, 919
TasI AATT 6 cut(s) 50, 189, 628, 827, 1000, 1025
TatI WGTACW 3 cut(s) 266, 519, 1030
TauI GCSGC 1 cut(s) 646
TfiI GAWTC 2 cut(s) 143, 976
Tru1I TTAA 3 cut(s) 504, 570, 624
Tru9I TTAA 3 cut(s) 504, 570, 624
TscAI CASTG 1 cut(s) 538
TseFI GTSAC 1 cut(s) 63
TseI GCWGC 1 cut(s) 464
Tsp45I GTSAC 1 cut(s) 63
TspDTI ATGAA 9 cut(s) 174, 327, 330, 398, 476, 671, 720, 912, 1053
TspGWI ACGGA 1 cut(s) 724
TspRI CASTG 1 cut(s) 538
VpaK11BI GGWCC 2 cut(s) 76, 398
VspI ATTAAT 1 cut(s) 624
XapI RAATTY 2 cut(s) 50, 1025
XceI RCATGY 1 cut(s) 791
XmnI GAANNNNTTC 1 cut(s) 945
XspI CTAG 4 cut(s) 68, 147, 470, 938
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.