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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 3 cut(s) | 17, 247, 262 |
| AcuI | CTGAAG | 1 cut(s) | 136 |
| AfaI | GTAC | 1 cut(s) | 37 |
| AgsI | TTSAA | 8 cut(s) | 111, 274, 294, 373, 386, 403, 425, 436 |
| AluBI | AGCT | 3 cut(s) | 139, 314, 444 |
| AluI | AGCT | 3 cut(s) | 139, 314, 444 |
| Alw21I | GWGCWC | 2 cut(s) | 446, 523 |
| Ama87I | CYCGRG | 1 cut(s) | 458 |
| AoxI | GGCC | 1 cut(s) | 526 |
| ApeKI | GCWGC | 4 cut(s) | 179, 211, 244, 314 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 351 |
| AspLEI | GCGC | 1 cut(s) | 7 |
| AsuHPI | GGTGA | 1 cut(s) | 335 |
| AvaI | CYCGRG | 1 cut(s) | 458 |
| BanII | GRGCYC | 1 cut(s) | 446 |
| Bbv12I | GWGCWC | 2 cut(s) | 446, 523 |
| BbvI | GCAGC | 4 cut(s) | 191, 223, 256, 301 |
| BccI | CCATC | 2 cut(s) | 204, 476 |
| BisI | GCNGC | 4 cut(s) | 180, 212, 245, 315 |
| BlsI | GCNGC | 4 cut(s) | 181, 213, 246, 316 |
| BmcAI | AGTACT | 1 cut(s) | 37 |
| BmeT110I | CYCGRG | 1 cut(s) | 458 |
| BmiI | GGNNCC | 1 cut(s) | 414 |
| BsaWI | WCCGGW | 1 cut(s) | 515 |
| BseXI | GCAGC | 4 cut(s) | 191, 223, 256, 301 |
| BshFI | GGCC | 1 cut(s) | 528 |
| BsiHKAI | GWGCWC | 2 cut(s) | 446, 523 |
| BsiHKCI | CYCGRG | 1 cut(s) | 458 |
| BsiSI | CCGG | 1 cut(s) | 516 |
| BsnI | GGCC | 1 cut(s) | 528 |
| BsoBI | CYCGRG | 1 cut(s) | 458 |
| Bsp1286I | GDGCHC | 2 cut(s) | 446, 523 |
| BspACI | CCGC | 3 cut(s) | 17, 247, 262 |
| BspANI | GGCC | 1 cut(s) | 528 |
| BspLI | GGNNCC | 1 cut(s) | 414 |
| Bst4CI | ACNGT | 2 cut(s) | 172, 409 |
| BstDEI | CTNAG | 1 cut(s) | 91 |
| BstHHI | GCGC | 1 cut(s) | 7 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 296, 311 |
| BstV1I | GCAGC | 4 cut(s) | 191, 223, 256, 301 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 482 |
| BsuRI | GGCC | 1 cut(s) | 528 |
| CfoI | GCGC | 1 cut(s) | 7 |
| Csp6I | GTAC | 1 cut(s) | 36 |
| CviAII | CATG | 3 cut(s) | 8, 41, 320 |
| CviQI | GTAC | 1 cut(s) | 36 |
| DdeI | CTNAG | 1 cut(s) | 91 |
| Ecl136II | GAGCTC | 1 cut(s) | 444 |
| Eco24I | GRGCYC | 1 cut(s) | 446 |
| Eco53kI | GAGCTC | 1 cut(s) | 444 |
| Eco57I | CTGAAG | 1 cut(s) | 136 |
| Eco88I | CYCGRG | 1 cut(s) | 458 |
| EcoICRI | GAGCTC | 1 cut(s) | 444 |
| EcoT22I | ATGCAT | 1 cut(s) | 301 |
| EcoT38I | GRGCYC | 1 cut(s) | 446 |
| FaeI | CATG | 3 cut(s) | 11, 44, 323 |
| FaiI | YATR | 9 cut(s) | 9, 42, 143, 269, 279, 301, 303, 321, 467 |
| FatI | CATG | 3 cut(s) | 7, 40, 319 |
| FauNDI | CATATG | 1 cut(s) | 301 |
| Fnu4HI | GCNGC | 4 cut(s) | 180, 212, 245, 315 |
| FriOI | GRGCYC | 1 cut(s) | 446 |
| Fsp4HI | GCNGC | 4 cut(s) | 180, 212, 245, 315 |
| GlaI | GCGC | 1 cut(s) | 6 |
| GluI | GCNGC | 4 cut(s) | 180, 212, 245, 315 |
| HaeIII | GGCC | 1 cut(s) | 528 |
| HapII | CCGG | 1 cut(s) | 516 |
| HhaI | GCGC | 1 cut(s) | 7 |
| Hin1II | CATG | 3 cut(s) | 11, 44, 323 |
| Hin6I | GCGC | 1 cut(s) | 5 |
| HinP1I | GCGC | 1 cut(s) | 5 |
| HincII | GTYRAC | 1 cut(s) | 495 |
| HindII | GTYRAC | 1 cut(s) | 495 |
| HindIII | AAGCTT | 1 cut(s) | 137 |
| HinfI | GANTC | 2 cut(s) | 332, 436 |
| HpaII | CCGG | 1 cut(s) | 516 |
| HphI | GGTGA | 1 cut(s) | 335 |
| Hpy166II | GTNNAC | 1 cut(s) | 495 |
| Hpy188I | TCNGA | 3 cut(s) | 55, 63, 441 |
| Hpy188III | TCNNGA | 1 cut(s) | 29 |
| Hpy8I | GTNNAC | 1 cut(s) | 495 |
| HpyAV | CCTTC | 2 cut(s) | 117, 265 |
| HpyCH4III | ACNGT | 2 cut(s) | 172, 409 |
| HpyCH4IV | ACGT | 1 cut(s) | 58 |
| HpyCH4V | TGCA | 2 cut(s) | 299, 305 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 296, 311 |
| HpyF3I | CTNAG | 1 cut(s) | 91 |
| HpySE526I | ACGT | 1 cut(s) | 58 |
| Hsp92II | CATG | 3 cut(s) | 11, 44, 323 |
| HspAI | GCGC | 1 cut(s) | 5 |
| LmnI | GCTCC | 4 cut(s) | 208, 412, 441, 518 |
| LpnPI | CCDG | 4 cut(s) | 42, 139, 146, 529 |
| Lsp1109I | GCAGC | 4 cut(s) | 191, 223, 256, 301 |
| MaeII | ACGT | 1 cut(s) | 58 |
| MaeIII | GTNAC | 1 cut(s) | 172 |
| MboII | GAAGA | 1 cut(s) | 93 |
| MhlI | GDGCHC | 2 cut(s) | 446, 523 |
| MluCI | AATT | 2 cut(s) | 392, 476 |
| MnlI | CCTC | 2 cut(s) | 4, 280 |
| Mph1103I | ATGCAT | 1 cut(s) | 301 |
| MroXI | GAANNNNTTC | 1 cut(s) | 351 |
| MslI | CAYNNNNRTG | 1 cut(s) | 45 |
| MspA1I | CMGCKG | 2 cut(s) | 247, 314 |
| MspI | CCGG | 1 cut(s) | 516 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 296, 311 |
| NdeI | CATATG | 1 cut(s) | 301 |
| NlaIII | CATG | 3 cut(s) | 11, 44, 323 |
| NlaIV | GGNNCC | 1 cut(s) | 414 |
| NmeAIII | GCCGAG | 1 cut(s) | 504 |
| NsiI | ATGCAT | 1 cut(s) | 301 |
| PaeR7I | CTCGAG | 1 cut(s) | 458 |
| PdmI | GAANNNNTTC | 1 cut(s) | 351 |
| PfeI | GAWTC | 2 cut(s) | 332, 436 |
| PkrI | GCNGC | 4 cut(s) | 181, 213, 246, 316 |
| Psp124BI | GAGCTC | 1 cut(s) | 446 |
| PspN4I | GGNNCC | 1 cut(s) | 414 |
| PspXI | VCTCGAGB | 1 cut(s) | 458 |
| PvuII | CAGCTG | 1 cut(s) | 314 |
| RsaI | GTAC | 1 cut(s) | 37 |
| RsaNI | GTAC | 1 cut(s) | 36 |
| RseI | CAYNNNNRTG | 1 cut(s) | 45 |
| SacI | GAGCTC | 1 cut(s) | 446 |
| SatI | GCNGC | 4 cut(s) | 180, 212, 245, 315 |
| ScaI | AGTACT | 1 cut(s) | 37 |
| SduI | GDGCHC | 2 cut(s) | 446, 523 |
| SetI | ASST | 6 cut(s) | 15, 61, 141, 166, 316, 446 |
| Sfr274I | CTCGAG | 1 cut(s) | 458 |
| SlaI | CTCGAG | 1 cut(s) | 458 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 45 |
| SmlI | CTYRAG | 1 cut(s) | 458 |
| SmoI | CTYRAG | 1 cut(s) | 458 |
| Sse9I | AATT | 2 cut(s) | 392, 476 |
| SsiI | CCGC | 3 cut(s) | 17, 247, 262 |
| SspI | AATATT | 1 cut(s) | 366 |
| SstI | GAGCTC | 1 cut(s) | 446 |
| TaaI | ACNGT | 2 cut(s) | 172, 409 |
| TaiI | ACGT | 1 cut(s) | 61 |
| TaqI | TCGA | 1 cut(s) | 459 |
| TasI | AATT | 2 cut(s) | 392, 476 |
| TatI | WGTACW | 1 cut(s) | 35 |
| TfiI | GAWTC | 2 cut(s) | 332, 436 |
| TseI | GCWGC | 4 cut(s) | 179, 211, 244, 314 |
| TspDTI | ATGAA | 1 cut(s) | 454 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 232 |
| XhoI | CTCGAG | 1 cut(s) | 458 |
| XmnI | GAANNNNTTC | 1 cut(s) | 351 |
| ZrmI | AGTACT | 1 cut(s) | 37 |
| Zsp2I | ATGCAT | 1 cut(s) | 301 |