Rh5AG024400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000613
Physical Location & Seq
Forward (+)
1688494 .. 1689551
1058 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG024400.1

Sequence Viewer

Length: 423 bp
ATGATCGGTGCTGTCTTTGCACAAACTCACCGATGTAACATAACGGCAGAAAGGTATTACGGTAACAGCAGCCCATTGTGTAGCCCATCGTGTATTGGAGCAGCATTGTGTAGCCAATGGTGTATTAAAGAAGCATCGGTTATCCTTCACCGCCTTATATTCAACTATGGAGTTGAGGCTTCAAATGCATATGCACTCACAGCTGCTCATGGTGAAACTGATTCTCAACTTGTAGAAAAGTTTCCAAATCAATTATTGTTGAAAACTGCGTTTCAAAGAAAATTGTTGTTGAAAACTGTGGAGCCAAGTGTTGAACTCTATTTGAATCGGAGCTCAAAAGATTTGCTCGAGTTCATACGCACCCAATTTGATGGATATTTGTCAACAGAGATGACACAAATGACCGGAGCACTCGGCCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

140

Amino Acids

15.54

Weight (kDa)

6.81

Isoelectric Point (pI)

31.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 151
AgsI TTSAA 7 cut(s) 163, 183, 262, 275, 292, 314, 325
AluBI AGCT 2 cut(s) 203, 333
AluI AGCT 2 cut(s) 203, 333
Alw21I GWGCWC 2 cut(s) 335, 412
Ama87I CYCGRG 1 cut(s) 347
AoxI GGCC 1 cut(s) 415
ApeKI GCWGC 3 cut(s) 69, 101, 203
Asp700I GAANNNNTTC 1 cut(s) 240
AsuHPI GGTGA 3 cut(s) 20, 140, 224
AvaI CYCGRG 1 cut(s) 347
BanII GRGCYC 1 cut(s) 335
Bbv12I GWGCWC 2 cut(s) 335, 412
BbvI GCAGC 3 cut(s) 81, 113, 190
BccI CCATC 2 cut(s) 94, 365
BceAI ACGGC 1 cut(s) 60
BisI GCNGC 3 cut(s) 70, 102, 204
BlsI GCNGC 3 cut(s) 71, 103, 205
BmeT110I CYCGRG 1 cut(s) 347
BmiI GGNNCC 1 cut(s) 303
BmsI GCATC 1 cut(s) 143
BsaWI WCCGGW 1 cut(s) 404
BseXI GCAGC 3 cut(s) 81, 113, 190
BshFI GGCC 1 cut(s) 417
BsiHKAI GWGCWC 2 cut(s) 335, 412
BsiHKCI CYCGRG 1 cut(s) 347
BsiSI CCGG 1 cut(s) 405
BsnI GGCC 1 cut(s) 417
BsoBI CYCGRG 1 cut(s) 347
Bsp1286I GDGCHC 2 cut(s) 335, 412
Bsp143I GATC 1 cut(s) 3
BspACI CCGC 1 cut(s) 151
BspANI GGCC 1 cut(s) 417
BspLI GGNNCC 1 cut(s) 303
BssMI GATC 1 cut(s) 3
Bst4CI ACNGT 2 cut(s) 62, 298
BstKTI GATC 1 cut(s) 6
BstMBI GATC 1 cut(s) 3
BstMWI GCNNNNNNNGC 3 cut(s) 17, 185, 200
BstV1I GCAGC 3 cut(s) 81, 113, 190
BstXI CCANNNNNNTGG 1 cut(s) 371
BsuRI GGCC 1 cut(s) 417
CviAII CATG 1 cut(s) 209
CviJI RGCY 8 cut(s) 72, 84, 114, 179, 203, 304, 333, 417
CviKI_1 RGCY 8 cut(s) 72, 84, 114, 179, 203, 304, 333, 417
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
Ecl136II GAGCTC 1 cut(s) 333
Eco24I GRGCYC 1 cut(s) 335
Eco53kI GAGCTC 1 cut(s) 333
Eco88I CYCGRG 1 cut(s) 347
EcoICRI GAGCTC 1 cut(s) 333
EcoT22I ATGCAT 1 cut(s) 190
EcoT38I GRGCYC 1 cut(s) 335
FaeI CATG 1 cut(s) 212
FaiI YATR 7 cut(s) 41, 158, 168, 190, 192, 210, 356
FatI CATG 1 cut(s) 208
FauNDI CATATG 1 cut(s) 190
Fnu4HI GCNGC 3 cut(s) 70, 102, 204
FriOI GRGCYC 1 cut(s) 335
Fsp4HI GCNGC 3 cut(s) 70, 102, 204
GluI GCNGC 3 cut(s) 70, 102, 204
HaeIII GGCC 1 cut(s) 417
HapII CCGG 1 cut(s) 405
Hin1II CATG 1 cut(s) 212
HincII GTYRAC 1 cut(s) 384
HindII GTYRAC 1 cut(s) 384
HinfI GANTC 2 cut(s) 221, 325
HpaII CCGG 1 cut(s) 405
HphI GGTGA 3 cut(s) 20, 140, 224
Hpy166II GTNNAC 1 cut(s) 384
Hpy188I TCNGA 1 cut(s) 330
Hpy8I GTNNAC 1 cut(s) 384
HpyAV CCTTC 1 cut(s) 155
HpyCH4III ACNGT 2 cut(s) 62, 298
HpyCH4V TGCA 3 cut(s) 20, 188, 194
HpyF10VI GCNNNNNNNGC 3 cut(s) 17, 185, 200
Hsp92II CATG 1 cut(s) 212
Kzo9I GATC 1 cut(s) 3
LmnI GCTCC 4 cut(s) 98, 301, 330, 407
LpnPI CCDG 1 cut(s) 418
Lsp1109I GCAGC 3 cut(s) 81, 113, 190
LweI GCATC 1 cut(s) 143
MaeIII GTNAC 2 cut(s) 35, 62
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MhlI GDGCHC 2 cut(s) 335, 412
MluCI AATT 3 cut(s) 251, 281, 365
MnlI CCTC 1 cut(s) 169
Mph1103I ATGCAT 1 cut(s) 190
MroXI GAANNNNTTC 1 cut(s) 240
MseI TTAA 1 cut(s) 126
MspA1I CMGCKG 1 cut(s) 203
MspI CCGG 1 cut(s) 405
MwoI GCNNNNNNNGC 3 cut(s) 17, 185, 200
NdeI CATATG 1 cut(s) 190
NdeII GATC 1 cut(s) 3
NlaIII CATG 1 cut(s) 212
NlaIV GGNNCC 1 cut(s) 303
NmeAIII GCCGAG 1 cut(s) 393
NsiI ATGCAT 1 cut(s) 190
PaeR7I CTCGAG 1 cut(s) 347
PdmI GAANNNNTTC 1 cut(s) 240
PfeI GAWTC 2 cut(s) 221, 325
PkrI GCNGC 3 cut(s) 71, 103, 205
Psp124BI GAGCTC 1 cut(s) 335
PspN4I GGNNCC 1 cut(s) 303
PspXI VCTCGAGB 1 cut(s) 347
PvuII CAGCTG 1 cut(s) 203
SacI GAGCTC 1 cut(s) 335
SaqAI TTAA 1 cut(s) 126
SatI GCNGC 3 cut(s) 70, 102, 204
Sau3AI GATC 1 cut(s) 3
SduI GDGCHC 2 cut(s) 335, 412
SetI ASST 3 cut(s) 56, 205, 335
SfaNI GCATC 1 cut(s) 143
Sfr274I CTCGAG 1 cut(s) 347
SgeI CNNG 7 cut(s) 102, 221, 242, 318, 359, 361, 417
SlaI CTCGAG 1 cut(s) 347
SmlI CTYRAG 1 cut(s) 347
SmoI CTYRAG 1 cut(s) 347
Sse9I AATT 3 cut(s) 251, 281, 365
SsiI CCGC 1 cut(s) 151
SstI GAGCTC 1 cut(s) 335
TaaI ACNGT 2 cut(s) 62, 298
TaqI TCGA 1 cut(s) 348
TasI AATT 3 cut(s) 251, 281, 365
TfiI GAWTC 2 cut(s) 221, 325
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
TseI GCWGC 3 cut(s) 69, 101, 203
TspDTI ATGAA 1 cut(s) 343
XhoI CTCGAG 1 cut(s) 347
XmnI GAANNNNTTC 1 cut(s) 240
Zsp2I ATGCAT 1 cut(s) 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.