Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0000613

Physical Location & Seq

Genomic Coordinates Reverse (-)

43001937 .. 43005301

Gene Structure 3365 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG225800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGCGACAAAGTTCAAGCTTTTCATATTTACTGTAGGAGTAGTAATATCAAGTTTTATCGGTAGAGCTAACAATGCTTGGGAGCATTTAATAAATTGGGTCAAAGGTGAGGGGCAACGTCCCACCATATATAGGGTAGCAAGAGCTACTCATCAGTATATGGATATTCACATGTTAATGTGCCGGCATAATGTTACATATATATTTATCGGACACAATTATGCAATGAATCATATGGTGCCTTGCATAATTAGGGTCGAAGATGAGGCTGCTCCACATGATCAAGTTAGCAAAGGCATTGGTTTTGACATGGAAGATGAGAAAATAATTGTAGCTGAGTTGGGCAGTAAATGGACAACACATGTGACCTCAATTAAAGATGCGCTGGACAAATGTTTCGTTTTTCTACACAAATACATGAGGATAAATAGAGGGAGACTAGATAACTCCCCCACGCAATGCTGCAAGTTTATTAATGAGGTTTTGAGGCCACAAATTGTGGCAAGTATAAAATATGTTGTTGCTTTGAAAGTGGGTGTGGTATTAATGAAAGCTATAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

187

Amino Acids

21.4

Weight (kDa)

9.24

Isoelectric Point (pI)

19.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000613)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13060 AT1G13060 AT1G13060 AT3G26340
fragaria_vesca	FvH4_1g01201 FvH4_4g24020 FvH4_6g30500
malus_domestica	MD10G1030600.v1.1 MD16G1116800.v1.1
prunus_persica	Prupe.1G229300_v2.0.a1 Prupe.1G229300_v2.0.a1 Prupe.1G229300_v2.0.a1
pyrus_communis	pycom10g01980 pycom13g10110
rosa_chinensis	RchiOBHm_Chr4g0430701 RchiOBHm_Chr5g0003071
rosa_laevigata	RLG00000006954 RLG00000031090 RLG00000031094 RLG00000031099 RLG00000031107 RLG00000031108 RLG00000031111 RLG00000031116 RLG00000032188
rosa_multiflora	Rmu_sc0000131.1_g000009 Rmu_sc0000146.1_g000015 Rmu_sc0002209.1_g000027
rosa_roxburghii	Rroxscaffold_1G00061170 Rroxscaffold_1G00061240 Rroxscaffold_1G00061300 Rroxscaffold_1G00072510 Rroxscaffold_1G00072750 Rroxscaffold_1G00072760 Rroxscaffold_5G00372440 Rroxscaffold_6G00429800 Rroxscaffold_6G00429810 Rroxscaffold_6G00429820 Rroxscaffold_6G00429850
rosa_rugosa	Rorug04G0245300 Rorug04G0402100 Rorug04G0402100 Rorug04G0402100 Rorug05G0025600 Rorug05G0026200
rosa_samantha	Rh3BG233200 Rh3DG047000 Rh3DG047300 Rh3DG047400 Rh3DG047800 Rh4AG053100 Rh4AG227500 Rh4BG230300 Rh4BG309300 Rh4CG242400 Rh4DG160600 Rh4DG225800 Rh5AG024300 Rh5AG024400 Rh5AG024700 Rh5AG027100 Rh5AG119900 Rh5BG118400 Rh5CG027100 Rh5CG027300 Rh5CG027700 Rh5CG128900 Rh5DG026900 Rh5DG027000 Rh5DG027700 Rh5DG028000 Rh5DG028500
rosa_wichuraiana	Rw0G010900 Rw3G003590 Rw4G026180 Rw5G002310 Rw5G002480 Rw5G002600 Rw5G010340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	238
AfiI	CCNNNNNNNGG	1 cut(s)	132
AflIII	ACRYGT	2 cut(s)	171, 361
AgsI	TTSAA	2 cut(s)	16, 529
AluBI	AGCT	6 cut(s)	19, 68, 146, 335, 554, 560
AluI	AGCT	6 cut(s)	19, 68, 146, 335, 554, 560
Alw26I	GTCTC	1 cut(s)	430
AoxI	GGCC	1 cut(s)	488
ApeKI	GCWGC	2 cut(s)	269, 462
ArsI	GACNNNNNNTTYG	2 cut(s)	380, 412
AseI	ATTAAT	2 cut(s)	474, 545
AspLEI	GCGC	1 cut(s)	385
AsuHPI	GGTGA	1 cut(s)	119
BanI	GGYRCC	1 cut(s)	238
BbvI	GCAGC	2 cut(s)	256, 449
BclI	TGATCA	1 cut(s)	280
BcoDI	GTCTC	1 cut(s)	430
BfaI	CTAG	1 cut(s)	440
BfmI	CTRYAG	2 cut(s)	33, 555
BisI	GCNGC	2 cut(s)	270, 463
BlsI	GCNGC	2 cut(s)	271, 464
BmiI	GGNNCC	1 cut(s)	240
BmsI	GCATC	1 cut(s)	370
Bsc4I	CCNNNNNNNGG	1 cut(s)	132
Bse118I	RCCGGY	1 cut(s)	183
Bse3DI	GCAATG	2 cut(s)	231, 464
BseLI	CCNNNNNNNGG	1 cut(s)	132
BseMI	GCAATG	2 cut(s)	231, 464
BseMII	CTCAG	1 cut(s)	327
BseXI	GCAGC	2 cut(s)	256, 449
BshFI	GGCC	1 cut(s)	490
BshNI	GGYRCC	1 cut(s)	238
BsiSI	CCGG	1 cut(s)	184
BslFI	GGGAC	1 cut(s)	105
BslI	CCNNNNNNNGG	1 cut(s)	132
BsmAI	GTCTC	1 cut(s)	430
BsmFI	GGGAC	1 cut(s)	105
BsnI	GGCC	1 cut(s)	490
Bsp143I	GATC	1 cut(s)	280
BspANI	GGCC	1 cut(s)	490
BspCNI	CTCAG	1 cut(s)	328
BspLI	GGNNCC	1 cut(s)	240
BspT107I	GGYRCC	1 cut(s)	238
BsrDI	GCAATG	2 cut(s)	231, 464
BsrFI	RCCGGY	1 cut(s)	183
BssAI	RCCGGY	1 cut(s)	183
BssMI	GATC	1 cut(s)	280
Bst4CI	ACNGT	1 cut(s)	34
BstC8I	GCNNGC	1 cut(s)	185
BstDEI	CTNAG	1 cut(s)	336
BstHHI	GCGC	1 cut(s)	385
BstKTI	GATC	1 cut(s)	283
BstMAI	GTCTC	1 cut(s)	430
BstMBI	GATC	1 cut(s)	280
BstMWI	GCNNNNNNNGC	1 cut(s)	74
BstNSI	RCATGY	2 cut(s)	175, 365
BstSFI	CTRYAG	2 cut(s)	33, 555
BstV1I	GCAGC	2 cut(s)	256, 449
BsuRI	GGCC	1 cut(s)	490
Cac8I	GCNNGC	1 cut(s)	185
CfoI	GCGC	1 cut(s)	385
Cfr10I	RCCGGY	1 cut(s)	183
CviAII	CATG	5 cut(s)	172, 278, 310, 362, 418
CviJI	RGCY	8 cut(s)	19, 68, 146, 269, 335, 490, 554, 560
CviKI_1	RGCY	8 cut(s)	19, 68, 146, 269, 335, 490, 554, 560
DdeI	CTNAG	1 cut(s)	336
DpnI	GATC	1 cut(s)	282
DpnII	GATC	1 cut(s)	280
FaeI	CATG	5 cut(s)	175, 281, 313, 365, 421
FaqI	GGGAC	1 cut(s)	105
FatI	CATG	5 cut(s)	171, 277, 309, 361, 417
FauNDI	CATATG	1 cut(s)	234
FbaI	TGATCA	1 cut(s)	280
Fnu4HI	GCNGC	2 cut(s)	270, 463
Fsp4HI	GCNGC	2 cut(s)	270, 463
FspBI	CTAG	1 cut(s)	440
GlaI	GCGC	1 cut(s)	384
GluI	GCNGC	2 cut(s)	270, 463
HaeIII	GGCC	1 cut(s)	490
HapII	CCGG	1 cut(s)	184
HhaI	GCGC	1 cut(s)	385
Hin1II	CATG	5 cut(s)	175, 281, 313, 365, 421
Hin6I	GCGC	1 cut(s)	383
HinP1I	GCGC	1 cut(s)	383
HindIII	AAGCTT	1 cut(s)	17
HinfI	GANTC	1 cut(s)	229
HpaII	CCGG	1 cut(s)	184
HphI	GGTGA	1 cut(s)	119
Hpy188I	TCNGA	1 cut(s)	212
HpyCH4III	ACNGT	1 cut(s)	34
HpyCH4IV	ACGT	1 cut(s)	118
HpyCH4V	TGCA	3 cut(s)	224, 246, 465
HpyF10VI	GCNNNNNNNGC	1 cut(s)	74
HpyF3I	CTNAG	1 cut(s)	336
HpySE526I	ACGT	1 cut(s)	118
Hsp92II	CATG	5 cut(s)	175, 281, 313, 365, 421
HspAI	GCGC	1 cut(s)	383
KroI	GCCGGC	1 cut(s)	183
KroNI	GCCGGC	1 cut(s)	185
Ksp22I	TGATCA	1 cut(s)	280
Kzo9I	GATC	1 cut(s)	280
LmnI	GCTCC	2 cut(s)	82, 277
LpnPI	CCDG	2 cut(s)	197, 371
Lsp1109I	GCAGC	2 cut(s)	256, 449
LweI	GCATC	1 cut(s)	370
MaeI	CTAG	1 cut(s)	440
MaeII	ACGT	1 cut(s)	118
MaeIII	GTNAC	2 cut(s)	193, 364
MalI	GATC	1 cut(s)	282
MboI	GATC	1 cut(s)	280
MboII	GAAGA	2 cut(s)	272, 326
MluCI	AATT	6 cut(s)	94, 217, 249, 327, 372, 495
MnlI	CCTC	7 cut(s)	103, 259, 379, 414, 425, 472, 480
MroNI	GCCGGC	1 cut(s)	183
MseI	TTAA	5 cut(s)	89, 176, 375, 474, 545
MslI	CAYNNNNRTG	2 cut(s)	176, 219
MspI	CCGG	1 cut(s)	184
MwoI	GCNNNNNNNGC	1 cut(s)	74
NaeI	GCCGGC	1 cut(s)	185
NdeI	CATATG	1 cut(s)	234
NdeII	GATC	1 cut(s)	280
NgoMIV	GCCGGC	1 cut(s)	183
NlaIII	CATG	5 cut(s)	175, 281, 313, 365, 421
NlaIV	GGNNCC	1 cut(s)	240
NmuCI	GTSAC	1 cut(s)	364
NspI	RCATGY	2 cut(s)	175, 365
PciI	ACATGT	2 cut(s)	171, 361
PdiI	GCCGGC	1 cut(s)	185
PfeI	GAWTC	1 cut(s)	229
PkrI	GCNGC	2 cut(s)	271, 464
PscI	ACATGT	2 cut(s)	171, 361
PshBI	ATTAAT	2 cut(s)	474, 545
PspN4I	GGNNCC	1 cut(s)	240
RseI	CAYNNNNRTG	2 cut(s)	176, 219
SaqAI	TTAA	5 cut(s)	89, 176, 375, 474, 545
SatI	GCNGC	2 cut(s)	270, 463
Sau3AI	GATC	1 cut(s)	280
SfaNI	GCATC	1 cut(s)	370
SfcI	CTRYAG	2 cut(s)	33, 555
SmiMI	CAYNNNNRTG	2 cut(s)	176, 219
Sse9I	AATT	6 cut(s)	94, 217, 249, 327, 372, 495
SspMI	CTAG	1 cut(s)	440
TaaI	ACNGT	1 cut(s)	34
TaiI	ACGT	1 cut(s)	121
TaqI	TCGA	1 cut(s)	258
TasI	AATT	6 cut(s)	94, 217, 249, 327, 372, 495
TfiI	GAWTC	1 cut(s)	229
Tru1I	TTAA	5 cut(s)	89, 176, 375, 474, 545
Tru9I	TTAA	5 cut(s)	89, 176, 375, 474, 545
TseFI	GTSAC	1 cut(s)	364
TseI	GCWGC	2 cut(s)	269, 462
Tsp45I	GTSAC	1 cut(s)	364
TspDTI	ATGAA	3 cut(s)	13, 242, 563
VspI	ATTAAT	2 cut(s)	474, 545
XceI	RCATGY	2 cut(s)	175, 365
XspI	CTAG	1 cut(s)	440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.