Rh3DG047800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000613
Physical Location & Seq
Forward (+)
3211340 .. 3212302
963 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG047800.1

Sequence Viewer

Length: 342 bp
ATGGGGCATAAAGATGATTGGGAGAAAATGTACTGTTATGTGAGTCGGAATTCACCTAGATCAATTGACGAAGCGGTAAAAATAATAAAAGAGTATTTACATCGTTACATTAAAAATCAGAACGCGGTGTTGGATGAATGCAAAAAGATTTACAACGAGGACCATACGTTTGGCACCATTATTGGTGGATACGACCCCGATAAGGGCTTTCAAGTTCGTAGTGTAACTCTTCTGGGCTATGATATTTTCGAAAGTGACCCTGATACAACAATTTTAACACTAGGGTCCGGTGAGGATGATGCGTACGAAATTTTGAACTCAGCAAATGATACATGTGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

12.92

Weight (kDa)

4.61

Isoelectric Point (pI)

34.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 173
AccII CGCG 1 cut(s) 125
AciI CCGC 2 cut(s) 74, 125
AcsI RAATTY 2 cut(s) 49, 309
AfaI GTAC 2 cut(s) 32, 305
AfiI CCNNNNNNNGG 2 cut(s) 202, 203
AflIII ACRYGT 1 cut(s) 332
AgsI TTSAA 2 cut(s) 212, 316
AjuI GAANNNNNNNTTGG 2 cut(s) 113, 145
ApoI RAATTY 2 cut(s) 49, 309
ArsI GACNNNNNNTTYG 2 cut(s) 152, 184
AspS9I GGNCC 2 cut(s) 160, 285
AsuHPI GGTGA 2 cut(s) 45, 302
AsuII TTCGAA 1 cut(s) 249
AvaII GGWCC 2 cut(s) 160, 285
BaeI ACNNNNGTAYC 1 cut(s) 321
BanI GGYRCC 1 cut(s) 173
BciVI GTATCC 1 cut(s) 182
BfaI CTAG 2 cut(s) 57, 281
BfuI GTATCC 1 cut(s) 182
Bme18I GGWCC 2 cut(s) 160, 285
BmgT120I GGNCC 2 cut(s) 160, 285
BmiI GGNNCC 2 cut(s) 175, 286
BmsI GCATC 1 cut(s) 289
Bpu14I TTCGAA 1 cut(s) 249
BsaWI WCCGGW 1 cut(s) 287
BsaXI ACNNNNNCTCC 2 cut(s) 14, 44
Bsc4I CCNNNNNNNGG 2 cut(s) 202, 203
BseGI GGATG 2 cut(s) 139, 301
BseLI CCNNNNNNNGG 2 cut(s) 202, 203
BseMII CTCAG 1 cut(s) 333
Bsh1236I CGCG 1 cut(s) 125
BshNI GGYRCC 1 cut(s) 173
BsiSI CCGG 1 cut(s) 288
BsiWI CGTACG 1 cut(s) 303
BslI CCNNNNNNNGG 2 cut(s) 202, 203
BsmI GAATGC 1 cut(s) 143
Bsp119I TTCGAA 1 cut(s) 249
Bsp143I GATC 1 cut(s) 59
BspACI CCGC 2 cut(s) 74, 125
BspCNI CTCAG 1 cut(s) 332
BspFNI CGCG 1 cut(s) 125
BspLI GGNNCC 2 cut(s) 175, 286
BspT104I TTCGAA 1 cut(s) 249
BspT107I GGYRCC 1 cut(s) 173
BssMI GATC 1 cut(s) 59
Bst4CI ACNGT 1 cut(s) 35
Bst6I CTCTTC 1 cut(s) 234
BstBI TTCGAA 1 cut(s) 249
BstDEI CTNAG 1 cut(s) 319
BstF5I GGATG 2 cut(s) 139, 301
BstFNI CGCG 1 cut(s) 125
BstKTI GATC 1 cut(s) 62
BstMBI GATC 1 cut(s) 59
BstNSI RCATGY 1 cut(s) 336
BstUI CGCG 1 cut(s) 125
BstXI CCANNNNNNTGG 1 cut(s) 170
BsuI GTATCC 1 cut(s) 182
BtsCI GGATG 2 cut(s) 139, 301
Cfr13I GGNCC 2 cut(s) 160, 285
Csp6I GTAC 2 cut(s) 31, 304
CviAII CATG 1 cut(s) 333
CviJI RGCY 2 cut(s) 207, 237
CviKI_1 RGCY 2 cut(s) 207, 237
CviQI GTAC 2 cut(s) 31, 304
DdeI CTNAG 1 cut(s) 319
DpnI GATC 1 cut(s) 61
DpnII GATC 1 cut(s) 59
Eam1104I CTCTTC 1 cut(s) 234
EarI CTCTTC 1 cut(s) 234
Eco47I GGWCC 2 cut(s) 160, 285
EcoRI GAATTC 1 cut(s) 49
FaeI CATG 1 cut(s) 336
FaiI YATR 5 cut(s) 9, 39, 165, 240, 334
FatI CATG 1 cut(s) 332
FokI GGATG 2 cut(s) 146, 308
FspBI CTAG 2 cut(s) 57, 281
HapII CCGG 1 cut(s) 288
Hin1II CATG 1 cut(s) 336
HinfI GANTC 1 cut(s) 43
HpaII CCGG 1 cut(s) 288
HphI GGTGA 2 cut(s) 45, 302
Hpy188I TCNGA 2 cut(s) 48, 120
HpyCH4III ACNGT 1 cut(s) 35
HpyCH4IV ACGT 1 cut(s) 167
HpyCH4V TGCA 1 cut(s) 141
HpyF3I CTNAG 1 cut(s) 319
HpySE526I ACGT 1 cut(s) 167
Hsp92II CATG 1 cut(s) 336
Kzo9I GATC 1 cut(s) 59
LpnPI CCDG 3 cut(s) 218, 273, 301
LweI GCATC 1 cut(s) 289
MaeI CTAG 2 cut(s) 57, 281
MaeII ACGT 1 cut(s) 167
MaeIII GTNAC 3 cut(s) 104, 223, 254
MalI GATC 1 cut(s) 61
MboI GATC 1 cut(s) 59
MboII GAAGA 1 cut(s) 221
MfeI CAATTG 1 cut(s) 63
MluCI AATT 4 cut(s) 49, 63, 270, 309
MlyI GAGTC 1 cut(s) 52
MmeI TCCRAC 2 cut(s) 26, 111
MnlI CCTC 2 cut(s) 151, 286
MseI TTAA 2 cut(s) 111, 275
MslI CAYNNNNRTG 1 cut(s) 12
MspI CCGG 1 cut(s) 288
MunI CAATTG 1 cut(s) 63
Mva1269I GAATGC 1 cut(s) 143
MvnI CGCG 1 cut(s) 125
NdeII GATC 1 cut(s) 59
NlaIII CATG 1 cut(s) 336
NlaIV GGNNCC 2 cut(s) 175, 286
NmuCI GTSAC 1 cut(s) 254
NspI RCATGY 1 cut(s) 336
NspV TTCGAA 1 cut(s) 249
PciI ACATGT 1 cut(s) 332
PctI GAATGC 1 cut(s) 143
Pfl23II CGTACG 1 cut(s) 303
PleI GAGTC 1 cut(s) 51
PpsI GAGTC 1 cut(s) 51
PscI ACATGT 1 cut(s) 332
PspLI CGTACG 1 cut(s) 303
PspN4I GGNNCC 2 cut(s) 175, 286
PspPI GGNCC 2 cut(s) 160, 285
RsaI GTAC 2 cut(s) 32, 305
RsaNI GTAC 2 cut(s) 31, 304
RseI CAYNNNNRTG 1 cut(s) 12
SaqAI TTAA 2 cut(s) 111, 275
Sau3AI GATC 1 cut(s) 59
Sau96I GGNCC 2 cut(s) 160, 285
SchI GAGTC 1 cut(s) 52
SetI ASST 2 cut(s) 58, 170
SfaNI GCATC 1 cut(s) 289
SfuI TTCGAA 1 cut(s) 249
SgeI CNNG 9 cut(s) 69, 136, 169, 209, 224, 245, 272, 293, 300
SinI GGWCC 2 cut(s) 160, 285
SmiMI CAYNNNNRTG 1 cut(s) 12
Sse9I AATT 4 cut(s) 49, 63, 270, 309
SsiI CCGC 2 cut(s) 74, 125
SspMI CTAG 2 cut(s) 57, 281
TaaI ACNGT 1 cut(s) 35
TaiI ACGT 1 cut(s) 170
TaqI TCGA 1 cut(s) 249
TasI AATT 4 cut(s) 49, 63, 270, 309
TatI WGTACW 1 cut(s) 30
Tru1I TTAA 2 cut(s) 111, 275
Tru9I TTAA 2 cut(s) 111, 275
TseFI GTSAC 1 cut(s) 254
Tsp45I GTSAC 1 cut(s) 254
TspDTI ATGAA 1 cut(s) 150
VpaK11BI GGWCC 2 cut(s) 160, 285
XapI RAATTY 2 cut(s) 49, 309
XceI RCATGY 1 cut(s) 336
XspI CTAG 2 cut(s) 57, 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.