Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0000613

Physical Location & Seq

Genomic Coordinates Forward (+)

3155347 .. 3156605

Gene Structure 1259 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG047000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGAAGTTGGTCAAGGGGACAACCAATCTTGCATTTGTATATGAAGGAGGCATCATGATGGGCACAGATTCGAGGACCACATCTTGCTATATGCATAATGGCAATATACAAGAAAATATAATTACAGATGAGAAAGAAAAAATTAAGAAGCTATCTTCCCACATCCACTTATTTTGCACATCTATGGGGCAAATTGAAGATTGGGAGAAAATGTACCGTTATGTGCGTCGGAATTCACCTAGATCAATTGACGAAGCGGTAAAAAAAACAAAAGAGTACTTACGTCGTTACATAAAAAATCATAGTGCGGTGTTGGATAGATGCAAAAAGATTTACAACGAGGACCATACGTTTGGCACCATTATTGCTGGATACGACCCTGATAAGGGTTTTCAAATTCGTAGTGTTACTCTTCTGGGCTACGATATTCTCGAAAGCAACCCTGATGCAACATTTTTAACACTAGGGTCCGGTGAGGATGAAGCGTACGAAATTTTGAACTCAGCAAATGATACATGTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0003674 GO:0003824 GO:0004175 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0005839 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016579 GO:0016787 GO:0019538 GO:0019774 GO:0019941 GO:0030163 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043632 GO:0043687 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0051603 GO:0070011 GO:0070013 GO:0070646 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

Proteasome

Protein Analysis

174

Amino Acids

19.93

Weight (kDa)

6.21

Isoelectric Point (pI)

50.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Proteasome	PF00227	5 - 168	6.4e-08	Proteasome subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000613)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13060 AT1G13060 AT1G13060 AT3G26340
fragaria_vesca	FvH4_1g01201 FvH4_4g24020 FvH4_6g30500
malus_domestica	MD10G1030600.v1.1 MD16G1116800.v1.1
prunus_persica	Prupe.1G229300_v2.0.a1 Prupe.1G229300_v2.0.a1 Prupe.1G229300_v2.0.a1
pyrus_communis	pycom10g01980 pycom13g10110
rosa_chinensis	RchiOBHm_Chr4g0430701 RchiOBHm_Chr5g0003071
rosa_laevigata	RLG00000006954 RLG00000031090 RLG00000031094 RLG00000031099 RLG00000031107 RLG00000031108 RLG00000031111 RLG00000031116 RLG00000032188
rosa_multiflora	Rmu_sc0000131.1_g000009 Rmu_sc0000146.1_g000015 Rmu_sc0002209.1_g000027
rosa_roxburghii	Rroxscaffold_1G00061170 Rroxscaffold_1G00061240 Rroxscaffold_1G00061300 Rroxscaffold_1G00072510 Rroxscaffold_1G00072750 Rroxscaffold_1G00072760 Rroxscaffold_5G00372440 Rroxscaffold_6G00429800 Rroxscaffold_6G00429810 Rroxscaffold_6G00429820 Rroxscaffold_6G00429850
rosa_rugosa	Rorug04G0245300 Rorug04G0402100 Rorug04G0402100 Rorug04G0402100 Rorug05G0025600 Rorug05G0026200
rosa_samantha	Rh3BG233200 Rh3DG047000 Rh3DG047300 Rh3DG047400 Rh3DG047800 Rh4AG053100 Rh4AG227500 Rh4BG230300 Rh4BG309300 Rh4CG242400 Rh4DG160600 Rh4DG225800 Rh5AG024300 Rh5AG024400 Rh5AG024700 Rh5AG027100 Rh5AG119900 Rh5BG118400 Rh5CG027100 Rh5CG027300 Rh5CG027700 Rh5CG128900 Rh5DG026900 Rh5DG027000 Rh5DG027700 Rh5DG028000 Rh5DG028500
rosa_wichuraiana	Rw0G010900 Rw3G003590 Rw4G026180 Rw5G002310 Rw5G002480 Rw5G002600 Rw5G010340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	356
AciI	CCGC	2 cut(s)	257, 308
AcsI	RAATTY	3 cut(s)	232, 396, 492
AfaI	GTAC	3 cut(s)	215, 278, 488
AfiI	CCNNNNNNNGG	2 cut(s)	385, 386
AflIII	ACRYGT	1 cut(s)	515
AgsI	TTSAA	3 cut(s)	197, 395, 499
AluBI	AGCT	1 cut(s)	151
AluI	AGCT	1 cut(s)	151
ApoI	RAATTY	3 cut(s)	232, 396, 492
ArsI	GACNNNNNNTTYG	2 cut(s)	335, 367
AspS9I	GGNCC	3 cut(s)	75, 343, 468
AsuHPI	GGTGA	2 cut(s)	228, 485
AvaII	GGWCC	3 cut(s)	75, 343, 468
BaeGI	GKGCMC	1 cut(s)	65
BaeI	ACNNNNGTAYC	1 cut(s)	504
BanI	GGYRCC	1 cut(s)	356
BccI	CCATC	1 cut(s)	52
BciVI	GTATCC	1 cut(s)	365
BfaI	CTAG	2 cut(s)	240, 464
BfuI	GTATCC	1 cut(s)	365
BmcAI	AGTACT	1 cut(s)	278
Bme18I	GGWCC	3 cut(s)	75, 343, 468
BmgT120I	GGNCC	3 cut(s)	75, 343, 468
BmiI	GGNNCC	2 cut(s)	358, 469
BmsI	GCATC	3 cut(s)	60, 311, 436
BsaWI	WCCGGW	1 cut(s)	470
BsaXI	ACNNNNNCTCC	2 cut(s)	197, 227
Bsc4I	CCNNNNNNNGG	2 cut(s)	385, 386
BseGI	GGATG	2 cut(s)	162, 484
BseLI	CCNNNNNNNGG	2 cut(s)	385, 386
BseMII	CTCAG	1 cut(s)	516
BseSI	GKGCMC	1 cut(s)	65
BshNI	GGYRCC	1 cut(s)	356
BsiSI	CCGG	1 cut(s)	471
BsiWI	CGTACG	1 cut(s)	486
BslFI	GGGAC	1 cut(s)	31
BslI	CCNNNNNNNGG	2 cut(s)	385, 386
BsmFI	GGGAC	1 cut(s)	31
Bsp1286I	GDGCHC	1 cut(s)	65
Bsp143I	GATC	1 cut(s)	242
BspACI	CCGC	2 cut(s)	257, 308
BspCNI	CTCAG	1 cut(s)	515
BspHI	TCATGA	1 cut(s)	54
BspLI	GGNNCC	2 cut(s)	358, 469
BspT107I	GGYRCC	1 cut(s)	356
BssMI	GATC	1 cut(s)	242
Bst4CI	ACNGT	1 cut(s)	218
Bst6I	CTCTTC	1 cut(s)	417
BstDEI	CTNAG	1 cut(s)	502
BstF5I	GGATG	2 cut(s)	162, 484
BstKTI	GATC	1 cut(s)	245
BstMBI	GATC	1 cut(s)	242
BstNSI	RCATGY	1 cut(s)	519
BstSLI	GKGCMC	1 cut(s)	65
BstXI	CCANNNNNNTGG	1 cut(s)	353
BsuI	GTATCC	1 cut(s)	365
BtsCI	GGATG	2 cut(s)	162, 484
CciI	TCATGA	1 cut(s)	54
Cfr13I	GGNCC	3 cut(s)	75, 343, 468
CseI	GACGC	1 cut(s)	215
Csp6I	GTAC	3 cut(s)	214, 277, 487
CspCI	CAANNNNNGTGG	2 cut(s)	155, 190
CviAII	CATG	2 cut(s)	55, 516
CviJI	RGCY	2 cut(s)	151, 420
CviKI_1	RGCY	2 cut(s)	151, 420
CviQI	GTAC	3 cut(s)	214, 277, 487
DdeI	CTNAG	1 cut(s)	502
DpnI	GATC	1 cut(s)	244
DpnII	GATC	1 cut(s)	242
Eam1104I	CTCTTC	1 cut(s)	417
EarI	CTCTTC	1 cut(s)	417
Eco47I	GGWCC	3 cut(s)	75, 343, 468
EcoRI	GAATTC	1 cut(s)	232
EcoT22I	ATGCAT	1 cut(s)	96
FaeI	CATG	2 cut(s)	58, 519
FaqI	GGGAC	1 cut(s)	31
FatI	CATG	2 cut(s)	54, 515
FokI	GGATG	2 cut(s)	149, 491
FspBI	CTAG	2 cut(s)	240, 464
HapII	CCGG	1 cut(s)	471
HgaI	GACGC	1 cut(s)	215
Hin1II	CATG	2 cut(s)	58, 519
HinfI	GANTC	1 cut(s)	68
HpaII	CCGG	1 cut(s)	471
HphI	GGTGA	2 cut(s)	228, 485
Hpy188I	TCNGA	1 cut(s)	231
Hpy188III	TCNNGA	2 cut(s)	55, 431
Hpy99I	CGWCG	2 cut(s)	231, 288
HpyAV	CCTTC	1 cut(s)	38
HpyCH4III	ACNGT	1 cut(s)	218
HpyCH4IV	ACGT	2 cut(s)	283, 350
HpyCH4V	TGCA	5 cut(s)	32, 94, 177, 324, 449
HpyF3I	CTNAG	1 cut(s)	502
HpySE526I	ACGT	2 cut(s)	283, 350
Hsp92II	CATG	2 cut(s)	58, 519
Kzo9I	GATC	1 cut(s)	242
LpnPI	CCDG	5 cut(s)	354, 393, 401, 456, 484
LweI	GCATC	3 cut(s)	60, 311, 436
MaeI	CTAG	2 cut(s)	240, 464
MaeII	ACGT	2 cut(s)	283, 350
MaeIII	GTNAC	2 cut(s)	287, 406
MalI	GATC	1 cut(s)	244
MboI	GATC	1 cut(s)	242
MboII	GAAGA	3 cut(s)	147, 209, 404
MfeI	CAATTG	1 cut(s)	246
MhlI	GDGCHC	1 cut(s)	65
MluCI	AATT	7 cut(s)	120, 141, 192, 232, 246, 396, 492
MmeI	TCCRAC	2 cut(s)	209, 294
MnlI	CCTC	4 cut(s)	41, 66, 334, 469
Mph1103I	ATGCAT	1 cut(s)	96
MseI	TTAA	2 cut(s)	144, 458
MslI	CAYNNNNRTG	2 cut(s)	56, 182
MspI	CCGG	1 cut(s)	471
MunI	CAATTG	1 cut(s)	246
NdeII	GATC	1 cut(s)	242
NlaIII	CATG	2 cut(s)	58, 519
NlaIV	GGNNCC	2 cut(s)	358, 469
NsiI	ATGCAT	1 cut(s)	96
NspI	RCATGY	1 cut(s)	519
PagI	TCATGA	1 cut(s)	54
PciI	ACATGT	1 cut(s)	515
PcsI	WCGNNNNNNNCGW	1 cut(s)	429
PfeI	GAWTC	1 cut(s)	68
Pfl23II	CGTACG	1 cut(s)	486
PscI	ACATGT	1 cut(s)	515
PspLI	CGTACG	1 cut(s)	486
PspN4I	GGNNCC	2 cut(s)	358, 469
PspPI	GGNCC	3 cut(s)	75, 343, 468
RsaI	GTAC	3 cut(s)	215, 278, 488
RsaNI	GTAC	3 cut(s)	214, 277, 487
RseI	CAYNNNNRTG	2 cut(s)	56, 182
SaqAI	TTAA	2 cut(s)	144, 458
Sau3AI	GATC	1 cut(s)	242
Sau96I	GGNCC	3 cut(s)	75, 343, 468
ScaI	AGTACT	1 cut(s)	278
SduI	GDGCHC	1 cut(s)	65
SetI	ASST	4 cut(s)	153, 241, 286, 353
SfaNI	GCATC	3 cut(s)	60, 311, 436
SinI	GGWCC	3 cut(s)	75, 343, 468
SmiMI	CAYNNNNRTG	2 cut(s)	56, 182
Sse9I	AATT	7 cut(s)	120, 141, 192, 232, 246, 396, 492
SsiI	CCGC	2 cut(s)	257, 308
SspMI	CTAG	2 cut(s)	240, 464
TaaI	ACNGT	1 cut(s)	218
TaiI	ACGT	2 cut(s)	286, 353
TaqI	TCGA	2 cut(s)	71, 432
TasI	AATT	7 cut(s)	120, 141, 192, 232, 246, 396, 492
TatI	WGTACW	1 cut(s)	276
TfiI	GAWTC	1 cut(s)	68
Tru1I	TTAA	2 cut(s)	144, 458
Tru9I	TTAA	2 cut(s)	144, 458
TspDTI	ATGAA	3 cut(s)	17, 57, 495
VpaK11BI	GGWCC	3 cut(s)	75, 343, 468
XapI	RAATTY	3 cut(s)	232, 396, 492
XceI	RCATGY	1 cut(s)	519
XspI	CTAG	2 cut(s)	240, 464
ZrmI	AGTACT	1 cut(s)	278
Zsp2I	ATGCAT	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.