Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000613

Physical Location & Seq

Genomic Coordinates Forward (+)

1712608 .. 1714187

Gene Structure 1580 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG024700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGATTGGTTTTGTTTACCGTGACGGCATCATGGTTGGAGCTGAATCTAGGGCTTCTAATGAATATGAAAAGCTTCTACATCCGCTTAGAATTATAGACAACAGAACCAAAATGGCCGAAATATCTTCCAACATAATTTACGTATATCAAGGGGTAGAGGCTCATTGTACACAATTGAACTTGTATATAAGTAGTAAGTTTGCGGACATGGATGAATATTGTGGCAATACACCTAGAGTTTCATGTGTGGTAGAAACGATGTATGAGTATCTGAATAGTCTGGATGACAAGGATATAGTATGTGGAGCTATCATCGTTGGATGGGATGCTAATTCGGGTCCTGAATTTCATCGCGTTTTTATAAAAAACAAAAAGGTTGTGAAACAAAGAGGTTCTATGCCTTTAGCGCTAGGAAGTGGTCAAGGTCATGCTCTTCGTATGCTTCAAAGTATCAACTACAATATGTCCACTGATGATGCTGCTGATTTGGCGTTTAAAACTTTATTTAATGCAACCTACTATGATAAGCATAGTGGTGGAGAACTGAAAGTTTATCACATTAATGAATCTGGATGGAAGCAGCTCCCTGTCATGAATGCTTTGGAAGCTTACACAAGATATTACGACCTTCACAGTCGCTTTGAACGGAAAACGCTTTTCTTGGTTGTGGATGCCGGGATCCAACCTATTTCCGCAAACGACCTTATAGAACACTTCAAGCCACATGCAAATTTACTCGCATCCCATCGTGTAGCCCTCTGTACATTTGGAGGTGATTGCTTCTACTTCCACCGCCTTGTGTTCGAGTTTGAAGATGAAGCAAAAAGGGCATATGAAACTACAACTCCTCATGTTCGAACTACTCCCTCGTACCTAGAACGGTTTCCAGATCAAGTGGTCTTGGATAATAAGAATCCAAGTGTTACAGTTTATGTGAATTGGAGCTCAAGGGGTTTGCTGGAATTTTTACACGATGAATGTCAGTTATTATATAAGATGGTTGATAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005839 GO:0019774 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

Proteasome

Protein Analysis

336

Amino Acids

38.43

Weight (kDa)

5.9

Isoelectric Point (pI)

33.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Proteasome	PF00227	2 - 187	2e-11	Proteasome subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000613)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13060 AT1G13060 AT1G13060 AT3G26340
fragaria_vesca	FvH4_1g01201 FvH4_4g24020 FvH4_6g30500
malus_domestica	MD10G1030600.v1.1 MD16G1116800.v1.1
prunus_persica	Prupe.1G229300_v2.0.a1 Prupe.1G229300_v2.0.a1 Prupe.1G229300_v2.0.a1
pyrus_communis	pycom10g01980 pycom13g10110
rosa_chinensis	RchiOBHm_Chr4g0430701 RchiOBHm_Chr5g0003071
rosa_laevigata	RLG00000006954 RLG00000031090 RLG00000031094 RLG00000031099 RLG00000031107 RLG00000031108 RLG00000031111 RLG00000031116 RLG00000032188
rosa_multiflora	Rmu_sc0000131.1_g000009 Rmu_sc0000146.1_g000015 Rmu_sc0002209.1_g000027
rosa_roxburghii	Rroxscaffold_1G00061170 Rroxscaffold_1G00061240 Rroxscaffold_1G00061300 Rroxscaffold_1G00072510 Rroxscaffold_1G00072750 Rroxscaffold_1G00072760 Rroxscaffold_5G00372440 Rroxscaffold_6G00429800 Rroxscaffold_6G00429810 Rroxscaffold_6G00429820 Rroxscaffold_6G00429850
rosa_rugosa	Rorug04G0245300 Rorug04G0402100 Rorug04G0402100 Rorug04G0402100 Rorug05G0025600 Rorug05G0026200
rosa_samantha	Rh3BG233200 Rh3DG047000 Rh3DG047300 Rh3DG047400 Rh3DG047800 Rh4AG053100 Rh4AG227500 Rh4BG230300 Rh4BG309300 Rh4CG242400 Rh4DG160600 Rh4DG225800 Rh5AG024300 Rh5AG024400 Rh5AG024700 Rh5AG027100 Rh5AG119900 Rh5BG118400 Rh5CG027100 Rh5CG027300 Rh5CG027700 Rh5CG128900 Rh5DG026900 Rh5DG027000 Rh5DG027700 Rh5DG028000 Rh5DG028500
rosa_wichuraiana	Rw0G010900 Rw3G003590 Rw4G026180 Rw5G002310 Rw5G002480 Rw5G002600 Rw5G010340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	362
AccII	CGCG	1 cut(s)	354
AciI	CCGC	4 cut(s)	83, 203, 693, 793
AclWI	GGATC	2 cut(s)	673, 686
AcoI	YGGCCR	1 cut(s)	114
AcsI	RAATTY	3 cut(s)	344, 730, 962
AfaI	GTAC	3 cut(s)	169, 763, 872
AfeI	AGCGCT	1 cut(s)	408
AgsI	TTSAA	5 cut(s)	178, 446, 644, 718, 812
AluBI	AGCT	6 cut(s)	41, 73, 308, 583, 608, 945
AluI	AGCT	6 cut(s)	41, 73, 308, 583, 608, 945
Alw21I	GWGCWC	1 cut(s)	947
AlwI	GGATC	2 cut(s)	673, 686
Aor51HI	AGCGCT	1 cut(s)	408
AoxI	GGCC	1 cut(s)	114
ApeKI	GCWGC	2 cut(s)	479, 580
ApoI	RAATTY	3 cut(s)	344, 730, 962
AseI	ATTAAT	1 cut(s)	561
Asp700I	GAANNNNTTC	2 cut(s)	72, 882
AspLEI	GCGC	1 cut(s)	409
AspS9I	GGNCC	1 cut(s)	338
AsuC2I	CCSGG	1 cut(s)	676
AsuHPI	GGTGA	1 cut(s)	785
AsuII	TTCGAA	1 cut(s)	856
AvaII	GGWCC	1 cut(s)	338
BamHI	GGATCC	1 cut(s)	678
BanII	GRGCYC	1 cut(s)	947
Bbv12I	GWGCWC	1 cut(s)	947
BbvI	GCAGC	2 cut(s)	466, 592
BccI	CCATC	4 cut(s)	315, 567, 753, 991
BceAI	ACGGC	1 cut(s)	40
BcnI	CCSGG	1 cut(s)	676
BfaI	CTAG	4 cut(s)	48, 234, 410, 875
BfoI	RGCGCY	1 cut(s)	410
BisI	GCNGC	2 cut(s)	480, 581
BlsI	GCNGC	2 cut(s)	481, 582
Bme1390I	CCNGG	1 cut(s)	676
Bme18I	GGWCC	1 cut(s)	338
BmgT120I	GGNCC	1 cut(s)	338
BmiI	GGNNCC	2 cut(s)	339, 680
BmrFI	CCNGG	1 cut(s)	676
BmsI	GCATC	5 cut(s)	36, 316, 466, 661, 749
Bpu14I	TTCGAA	1 cut(s)	856
BpuEI	CTTGAG	1 cut(s)	931
BpuMI	CCSGG	1 cut(s)	676
BsaAI	YACGTR	1 cut(s)	142
BsaXI	ACNNNNNCTCC	2 cut(s)	829, 859
BseGI	GGATG	8 cut(s)	79, 217, 289, 326, 331, 578, 676, 740
BseRI	GAGGAG	1 cut(s)	837
BseXI	GCAGC	2 cut(s)	466, 592
Bsh1236I	CGCG	1 cut(s)	354
BshFI	GGCC	1 cut(s)	116
BsiHKAI	GWGCWC	1 cut(s)	947
BsiSI	CCGG	1 cut(s)	675
BsmI	GAATGC	1 cut(s)	601
BsnI	GGCC	1 cut(s)	116
Bsp119I	TTCGAA	1 cut(s)	856
Bsp1286I	GDGCHC	1 cut(s)	947
Bsp1407I	TGTACA	2 cut(s)	167, 761
Bsp143I	GATC	2 cut(s)	678, 889
BspACI	CCGC	4 cut(s)	83, 203, 693, 793
BspANI	GGCC	1 cut(s)	116
BspFNI	CGCG	1 cut(s)	354
BspHI	TCATGA	1 cut(s)	591
BspLI	GGNNCC	2 cut(s)	339, 680
BspPI	GGATC	2 cut(s)	673, 686
BspQI	GCTCTTC	1 cut(s)	438
BspT104I	TTCGAA	1 cut(s)	856
BsrGI	TGTACA	2 cut(s)	167, 761
BssMI	GATC	2 cut(s)	678, 889
Bst4CI	ACNGT	4 cut(s)	20, 635, 882, 928
Bst6I	CTCTTC	1 cut(s)	438
BstAUI	TGTACA	2 cut(s)	167, 761
BstBAI	YACGTR	1 cut(s)	142
BstBI	TTCGAA	1 cut(s)	856
BstDEI	CTNAG	1 cut(s)	86
BstF5I	GGATG	8 cut(s)	79, 217, 289, 326, 331, 578, 676, 740
BstFNI	CGCG	1 cut(s)	354
BstH2I	RGCGCY	1 cut(s)	410
BstHHI	GCGC	1 cut(s)	409
BstKTI	GATC	2 cut(s)	681, 892
BstMBI	GATC	2 cut(s)	678, 889
BstMWI	GCNNNNNNNGC	4 cut(s)	406, 488, 605, 827
BstNSI	RCATGY	1 cut(s)	728
BstSCI	CCNGG	1 cut(s)	674
BstSNI	TACGTA	1 cut(s)	142
BstUI	CGCG	1 cut(s)	354
BstV1I	GCAGC	2 cut(s)	466, 592
BstX2I	RGATCY	1 cut(s)	678
BstYI	RGATCY	1 cut(s)	678
BsuRI	GGCC	1 cut(s)	116
BtgZI	GCGATG	1 cut(s)	335
BtsCI	GGATG	8 cut(s)	79, 217, 289, 326, 331, 578, 676, 740
BtsIMutI	CAGTG	1 cut(s)	468
CciI	TCATGA	1 cut(s)	591
CfoI	GCGC	1 cut(s)	409
Cfr13I	GGNCC	1 cut(s)	338
Csp6I	GTAC	3 cut(s)	168, 762, 871
CviAII	CATG	7 cut(s)	31, 208, 243, 428, 592, 725, 851
CviQI	GTAC	3 cut(s)	168, 762, 871
DdeI	CTNAG	1 cut(s)	86
DpnI	GATC	2 cut(s)	680, 891
DpnII	GATC	2 cut(s)	678, 889
DraI	TTTAAA	1 cut(s)	496
EaeI	YGGCCR	1 cut(s)	114
Eam1104I	CTCTTC	1 cut(s)	438
EarI	CTCTTC	1 cut(s)	438
Ecl136II	GAGCTC	1 cut(s)	945
Eco105I	TACGTA	1 cut(s)	142
Eco24I	GRGCYC	1 cut(s)	947
Eco47I	GGWCC	1 cut(s)	338
Eco47III	AGCGCT	1 cut(s)	408
Eco53kI	GAGCTC	1 cut(s)	945
EcoICRI	GAGCTC	1 cut(s)	945
EcoO109I	RGGNCCY	1 cut(s)	338
EcoT38I	GRGCYC	1 cut(s)	947
FaeI	CATG	7 cut(s)	34, 211, 246, 431, 595, 728, 854
FatI	CATG	7 cut(s)	30, 207, 242, 427, 591, 724, 850
FauNDI	CATATG	1 cut(s)	832
Fnu4HI	GCNGC	2 cut(s)	480, 581
FokI	GGATG	8 cut(s)	66, 224, 296, 333, 338, 585, 683, 727
FriOI	GRGCYC	1 cut(s)	947
Fsp4HI	GCNGC	2 cut(s)	480, 581
FspBI	CTAG	4 cut(s)	48, 234, 410, 875
GlaI	GCGC	1 cut(s)	408
GluI	GCNGC	2 cut(s)	480, 581
HaeII	RGCGCY	1 cut(s)	410
HaeIII	GGCC	1 cut(s)	116
HapII	CCGG	1 cut(s)	675
HhaI	GCGC	1 cut(s)	409
Hin1II	CATG	7 cut(s)	34, 211, 246, 431, 595, 728, 854
Hin6I	GCGC	1 cut(s)	407
HinP1I	GCGC	1 cut(s)	407
HindIII	AAGCTT	2 cut(s)	71, 606
HinfI	GANTC	3 cut(s)	44, 566, 913
HpaII	CCGG	1 cut(s)	675
HphI	GGTGA	1 cut(s)	785
Hpy166II	GTNNAC	3 cut(s)	16, 170, 468
Hpy188I	TCNGA	1 cut(s)	273
Hpy188III	TCNNGA	5 cut(s)	281, 341, 570, 592, 887
Hpy8I	GTNNAC	3 cut(s)	16, 170, 468
HpyAV	CCTTC	1 cut(s)	638
HpyCH4III	ACNGT	4 cut(s)	20, 635, 882, 928
HpyCH4IV	ACGT	1 cut(s)	141
HpyCH4V	TGCA	2 cut(s)	512, 728
HpyF10VI	GCNNNNNNNGC	4 cut(s)	406, 488, 605, 827
HpyF3I	CTNAG	1 cut(s)	86
HpySE526I	ACGT	1 cut(s)	141
Hsp92II	CATG	7 cut(s)	34, 211, 246, 431, 595, 728, 854
HspAI	GCGC	1 cut(s)	407
Kzo9I	GATC	2 cut(s)	678, 889
LguI	GCTCTTC	1 cut(s)	438
LmnI	GCTCC	4 cut(s)	38, 305, 588, 942
LpnPI	CCDG	7 cut(s)	266, 354, 555, 600, 688, 900, 944
Lsp1109I	GCAGC	2 cut(s)	466, 592
LweI	GCATC	5 cut(s)	36, 316, 466, 661, 749
MaeI	CTAG	4 cut(s)	48, 234, 410, 875
MaeII	ACGT	1 cut(s)	141
MaeIII	GTNAC	2 cut(s)	20, 922
MalI	GATC	2 cut(s)	680, 891
MboI	GATC	2 cut(s)	678, 889
MboII	GAAGA	3 cut(s)	117, 425, 824
MfeI	CAATTG	1 cut(s)	173
MflI	RGATCY	1 cut(s)	678
MhlI	GDGCHC	1 cut(s)	947
MluCI	AATT	8 cut(s)	90, 135, 173, 331, 344, 730, 937, 962
MmeI	TCCRAC	4 cut(s)	16, 153, 298, 706
MnlI	CCTC	6 cut(s)	151, 383, 764, 767, 858, 877
MroXI	GAANNNNTTC	2 cut(s)	72, 882
MseI	TTAA	4 cut(s)	495, 507, 561, 1009
MslI	CAYNNNNRTG	2 cut(s)	534, 561
MspI	CCGG	1 cut(s)	675
MspR9I	CCNGG	1 cut(s)	676
MunI	CAATTG	1 cut(s)	173
Mva1269I	GAATGC	1 cut(s)	601
MvnI	CGCG	1 cut(s)	354
MwoI	GCNNNNNNNGC	4 cut(s)	406, 488, 605, 827
NciI	CCSGG	1 cut(s)	676
NdeI	CATATG	1 cut(s)	832
NdeII	GATC	2 cut(s)	678, 889
NlaIII	CATG	7 cut(s)	34, 211, 246, 431, 595, 728, 854
NlaIV	GGNNCC	2 cut(s)	339, 680
NmuCI	GTSAC	1 cut(s)	20
NspI	RCATGY	1 cut(s)	728
NspV	TTCGAA	1 cut(s)	856
PagI	TCATGA	1 cut(s)	591
PciSI	GCTCTTC	1 cut(s)	438
PctI	GAATGC	1 cut(s)	601
PdmI	GAANNNNTTC	2 cut(s)	72, 882
PfeI	GAWTC	3 cut(s)	44, 566, 913
PkrI	GCNGC	2 cut(s)	481, 582
Ppu21I	YACGTR	1 cut(s)	142
PpuMI	RGGWCCY	1 cut(s)	338
PshBI	ATTAAT	1 cut(s)	561
PsiI	TTATAA	1 cut(s)	362
Psp124BI	GAGCTC	1 cut(s)	947
Psp5II	RGGWCCY	1 cut(s)	338
PspN4I	GGNNCC	2 cut(s)	339, 680
PspPI	GGNCC	1 cut(s)	338
PspPPI	RGGWCCY	1 cut(s)	338
PsuI	RGATCY	1 cut(s)	678
RsaI	GTAC	3 cut(s)	169, 763, 872
RsaNI	GTAC	3 cut(s)	168, 762, 871
RseI	CAYNNNNRTG	2 cut(s)	534, 561
SacI	GAGCTC	1 cut(s)	947
SapI	GCTCTTC	1 cut(s)	438
SaqAI	TTAA	4 cut(s)	495, 507, 561, 1009
SatI	GCNGC	2 cut(s)	480, 581
Sau3AI	GATC	2 cut(s)	678, 889
Sau96I	GGNCC	1 cut(s)	338
ScrFI	CCNGG	1 cut(s)	676
SduI	GDGCHC	1 cut(s)	947
SfaNI	GCATC	5 cut(s)	36, 316, 466, 661, 749
SfuI	TTCGAA	1 cut(s)	856
SinI	GGWCC	1 cut(s)	338
SmiMI	CAYNNNNRTG	2 cut(s)	534, 561
SmlI	CTYRAG	1 cut(s)	946
SmoI	CTYRAG	1 cut(s)	946
SnaBI	TACGTA	1 cut(s)	142
Sse9I	AATT	8 cut(s)	90, 135, 173, 331, 344, 730, 937, 962
SsiI	CCGC	4 cut(s)	83, 203, 693, 793
SspI	AATATT	1 cut(s)	218
SspMI	CTAG	4 cut(s)	48, 234, 410, 875
SstI	GAGCTC	1 cut(s)	947
StyD4I	CCNGG	1 cut(s)	674
TaaI	ACNGT	4 cut(s)	20, 635, 882, 928
TaiI	ACGT	1 cut(s)	144
TaqI	TCGA	2 cut(s)	804, 856
TasI	AATT	8 cut(s)	90, 135, 173, 331, 344, 730, 937, 962
TatI	WGTACW	2 cut(s)	167, 761
TfiI	GAWTC	3 cut(s)	44, 566, 913
Tru1I	TTAA	4 cut(s)	495, 507, 561, 1009
Tru9I	TTAA	4 cut(s)	495, 507, 561, 1009
TscAI	CASTG	1 cut(s)	475
TseFI	GTSAC	1 cut(s)	20
TseI	GCWGC	2 cut(s)	479, 580
Tsp45I	GTSAC	1 cut(s)	20
TspGWI	ACGGA	1 cut(s)	661
TspRI	CASTG	1 cut(s)	475
VpaK11BI	GGWCC	1 cut(s)	338
VspI	ATTAAT	1 cut(s)	561
XapI	RAATTY	3 cut(s)	344, 730, 962
XceI	RCATGY	1 cut(s)	728
XmnI	GAANNNNTTC	2 cut(s)	72, 882
XspI	CTAG	4 cut(s)	48, 234, 410, 875

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.