Rroxscaffold_1G00061300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000613
Physical Location & Seq
Reverse (-)
83471665 .. 83473466
1802 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00061300.1

Sequence Viewer

Length: 219 bp
ATGTCGGTTTTATTCCCCGATATCCCCCGGAAAATTTTCCCCATTAGGTCGAATATTCAATGCGTATCAAAGGGGATGGAAATTTCAGACAAGAAGCAGAAGTTTTTTGAAATATCATCCAACATATTTTGTACAATGATGGGGAGAGTTCATGTCTGGGAAAACATGGCCCTATATGTGCAGCAAAAGGTTAAGGCACTTATGATTGTCCAGCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

72

Amino Acids

8.42

Weight (kDa)

9.63

Isoelectric Point (pI)

48.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 33, 81
AfaI GTAC 1 cut(s) 133
AgsI TTSAA 2 cut(s) 59, 110
AluBI AGCT 1 cut(s) 214
AluI AGCT 1 cut(s) 214
AoxI GGCC 1 cut(s) 168
ApeKI GCWGC 1 cut(s) 181
ApoI RAATTY 2 cut(s) 33, 81
Asp700I GAANNNNTTC 1 cut(s) 35
AspS9I GGNCC 1 cut(s) 169
AsuC2I CCSGG 1 cut(s) 28
BbvI GCAGC 1 cut(s) 193
BccI CCATC 2 cut(s) 70, 133
BcnI CCSGG 1 cut(s) 28
BfaI CTAG 1 cut(s) 217
BisI GCNGC 1 cut(s) 182
BlsI GCNGC 1 cut(s) 183
Bme1390I CCNGG 1 cut(s) 28
BmgT120I GGNCC 1 cut(s) 169
BmrFI CCNGG 1 cut(s) 28
BpuMI CCSGG 1 cut(s) 28
BsaJI CCNNGG 1 cut(s) 26
BseDI CCNNGG 1 cut(s) 26
BseGI GGATG 2 cut(s) 81, 116
BseXI GCAGC 1 cut(s) 193
BsgI GTGCAG 1 cut(s) 200
BshFI GGCC 1 cut(s) 170
BsiSI CCGG 1 cut(s) 28
BsnI GGCC 1 cut(s) 170
Bsp1407I TGTACA 1 cut(s) 131
BspANI GGCC 1 cut(s) 170
BsrGI TGTACA 1 cut(s) 131
BssECI CCNNGG 1 cut(s) 26
BstAUI TGTACA 1 cut(s) 131
BstF5I GGATG 2 cut(s) 81, 116
BstSCI CCNGG 1 cut(s) 26
BstV1I GCAGC 1 cut(s) 193
BsuRI GGCC 1 cut(s) 170
BtsCI GGATG 2 cut(s) 81, 116
Cfr13I GGNCC 1 cut(s) 169
Csp6I GTAC 1 cut(s) 132
CviAII CATG 2 cut(s) 152, 166
CviJI RGCY 2 cut(s) 170, 214
CviKI_1 RGCY 2 cut(s) 170, 214
CviQI GTAC 1 cut(s) 132
Eco32I GATATC 1 cut(s) 22
EcoRV GATATC 1 cut(s) 22
FaeI CATG 2 cut(s) 155, 169
FaiI YATR 6 cut(s) 125, 153, 167, 175, 177, 203
FatI CATG 2 cut(s) 151, 165
Fnu4HI GCNGC 1 cut(s) 182
FokI GGATG 2 cut(s) 88, 103
Fsp4HI GCNGC 1 cut(s) 182
FspBI CTAG 1 cut(s) 217
GluI GCNGC 1 cut(s) 182
HaeIII GGCC 1 cut(s) 170
HapII CCGG 1 cut(s) 28
Hin1II CATG 2 cut(s) 155, 169
HpaII CCGG 1 cut(s) 28
Hpy188I TCNGA 1 cut(s) 88
HpyCH4V TGCA 1 cut(s) 181
Hsp92II CATG 2 cut(s) 155, 169
LpnPI CCDG 2 cut(s) 41, 142
Lsp1109I GCAGC 1 cut(s) 193
MaeI CTAG 1 cut(s) 217
MluCI AATT 2 cut(s) 33, 81
MmeI TCCRAC 1 cut(s) 144
MroXI GAANNNNTTC 1 cut(s) 35
MseI TTAA 1 cut(s) 192
MspI CCGG 1 cut(s) 28
MspR9I CCNGG 1 cut(s) 28
NciI CCSGG 1 cut(s) 28
NlaIII CATG 2 cut(s) 155, 169
PdmI GAANNNNTTC 1 cut(s) 35
PkrI GCNGC 1 cut(s) 183
PspPI GGNCC 1 cut(s) 169
RsaI GTAC 1 cut(s) 133
RsaNI GTAC 1 cut(s) 132
SaqAI TTAA 1 cut(s) 192
SatI GCNGC 1 cut(s) 182
Sau96I GGNCC 1 cut(s) 169
ScrFI CCNGG 1 cut(s) 28
SetI ASST 3 cut(s) 50, 192, 216
SgeI CNNG 7 cut(s) 29, 39, 40, 103, 164, 169, 178
Sse9I AATT 2 cut(s) 33, 81
SspI AATATT 1 cut(s) 55
SspMI CTAG 1 cut(s) 217
StyD4I CCNGG 1 cut(s) 26
TaqI TCGA 1 cut(s) 50
TasI AATT 2 cut(s) 33, 81
TatI WGTACW 1 cut(s) 131
Tru1I TTAA 1 cut(s) 192
Tru9I TTAA 1 cut(s) 192
TseI GCWGC 1 cut(s) 181
TspDTI ATGAA 1 cut(s) 140
XapI RAATTY 2 cut(s) 33, 81
XmnI GAANNNNTTC 1 cut(s) 35
XspI CTAG 1 cut(s) 217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.