RLG00000031107

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000613
Physical Location & Seq
Reverse (-)
2136588 .. 2141771
5184 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031107

Sequence Viewer

Length: 783 bp
ATGGTTTCAGTATCTTCCAAAATAATTTACGTAATTCAGGGGGTGCATGCTGATTGTATGGAGATAAACAGGCATATAAGAAAGAAGTTTACGGGTGAGTATGCTGGCAATGCACCTACAATTTCAAGTGTAGTAGAAACGGTGTACGAGTATCTGAATGGTCTCCATGACAAGGAAAAAGTATGTGGAGCCATCGTCGCTGGATTCGATGCTTCGGGTCCTCAAATTCATTATATTTTCATAAAAAACGGAAAAATTGTGAAAGAAAGACCTTCTCTGGGTGCAGCAGCACTCGGAAGCGGTCAAGCTTATGCTATCCTTGTTTTTAAAGAAGAGTCACGACCAACCTTATTAGCAGCCCACCTTGTAGCCCGTTGTGTATTGGGAGATGATCGGTTCTACTTCCACCGCCTGGTGTTCGAGTCTAAACGGGGGGCAGTAAGAGCATATGACAAGACAAGTGCTCATGGTCGAACTAGTCCCTCGTATCTAGAATGGTTTCCAAATCAAGCGGTCTTGGACAATAAGCCAATTGTTACAGTTTATGGAATGGAGCTCAAAGGTGGTTCAATTCGGATAAAATTTATCAGTGGATCTGTAGACAACAAGAAGGGGGATCAGGAGTTGCAACAGGCGATATACTCAACTACCTTCAGGTTATTTGCGTATCACTTGGAGGCTAATCTGCTTTGTCCTCTATTCTCTATCATCTATCTTCCACTCGTCATAGAAAATTCAAGCTCAGTTGTAGGCAATGTTTGTTCACTTTGGTTAATTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

261

Amino Acids

28.78

Weight (kDa)

8.85

Isoelectric Point (pI)

32.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 412
AccI GTMKAC 1 cut(s) 600
AciI CCGC 3 cut(s) 300, 409, 512
AclWI GGATC 2 cut(s) 601, 624
AcsI RAATTY 3 cut(s) 225, 581, 733
AcuI CTGAAG 1 cut(s) 637
AfaI GTAC 1 cut(s) 146
AfiI CCNNNNNNNGG 3 cut(s) 172, 278, 412
AgsI TTSAA 3 cut(s) 126, 570, 738
AhlI ACTAGT 1 cut(s) 476
AjnI CCWGG 1 cut(s) 411
AluBI AGCT 3 cut(s) 308, 556, 741
AluI AGCT 3 cut(s) 308, 556, 741
Alw21I GWGCWC 2 cut(s) 466, 558
Alw26I GTCTC 1 cut(s) 167
AlwI GGATC 2 cut(s) 601, 624
ApeKI GCWGC 3 cut(s) 284, 287, 356
ApoI RAATTY 3 cut(s) 225, 581, 733
Asp700I GAANNNNTTC 1 cut(s) 498
AspS9I GGNCC 1 cut(s) 218
AsuHPI GGTGA 1 cut(s) 107
AvaII GGWCC 1 cut(s) 218
BanII GRGCYC 1 cut(s) 558
Bbv12I GWGCWC 2 cut(s) 466, 558
BbvI GCAGC 3 cut(s) 296, 299, 368
BccI CCATC 1 cut(s) 200
BciT130I CCWGG 1 cut(s) 413
BcoDI GTCTC 1 cut(s) 167
BcuI ACTAGT 1 cut(s) 476
BfaI CTAG 2 cut(s) 477, 491
BfmI CTRYAG 1 cut(s) 597
BisI GCNGC 3 cut(s) 285, 288, 357
BlsI GCNGC 3 cut(s) 286, 289, 358
Bme1390I CCNGG 1 cut(s) 413
Bme18I GGWCC 1 cut(s) 218
BmgT120I GGNCC 1 cut(s) 218
BmiI GGNNCC 2 cut(s) 190, 219
BmrFI CCNGG 1 cut(s) 413
BmsI GCATC 1 cut(s) 199
BsaAI YACGTR 1 cut(s) 31
BsaI GGTCTC 1 cut(s) 167
BsaXI ACNNNNNCTCC 2 cut(s) 180, 210
Bsc4I CCNNNNNNNGG 3 cut(s) 172, 278, 412
Bse3DI GCAATG 2 cut(s) 115, 760
BseBI CCWGG 1 cut(s) 413
BseLI CCNNNNNNNGG 3 cut(s) 172, 278, 412
BseMI GCAATG 2 cut(s) 115, 760
BseMII CTCAG 1 cut(s) 756
BseXI GCAGC 3 cut(s) 296, 299, 368
BsgI GTGCAG 1 cut(s) 303
BsiHKAI GWGCWC 2 cut(s) 466, 558
BslFI GGGAC 1 cut(s) 465
BslI CCNNNNNNNGG 3 cut(s) 172, 278, 412
BsmAI GTCTC 1 cut(s) 167
BsmFI GGGAC 1 cut(s) 465
Bso31I GGTCTC 1 cut(s) 167
Bsp1286I GDGCHC 2 cut(s) 466, 558
Bsp143I GATC 3 cut(s) 391, 593, 616
BspACI CCGC 3 cut(s) 300, 409, 512
BspCNI CTCAG 1 cut(s) 755
BspLI GGNNCC 2 cut(s) 190, 219
BspPI GGATC 2 cut(s) 601, 624
BspTNI GGTCTC 1 cut(s) 167
BsrDI GCAATG 2 cut(s) 115, 760
BssMI GATC 3 cut(s) 391, 593, 616
Bst2UI CCWGG 1 cut(s) 413
Bst4CI ACNGT 2 cut(s) 142, 541
Bst6I CTCTTC 1 cut(s) 327
BstBAI YACGTR 1 cut(s) 31
BstC8I GCNNGC 2 cut(s) 48, 106
BstDEI CTNAG 1 cut(s) 742
BstKTI GATC 3 cut(s) 394, 596, 619
BstMAI GTCTC 1 cut(s) 167
BstMBI GATC 3 cut(s) 391, 593, 616
BstMWI GCNNNNNNNGC 3 cut(s) 110, 197, 443
BstNI CCWGG 1 cut(s) 413
BstNSI RCATGY 1 cut(s) 50
BstSCI CCNGG 1 cut(s) 411
BstSFI CTRYAG 1 cut(s) 597
BstSNI TACGTA 1 cut(s) 31
BstV1I GCAGC 3 cut(s) 296, 299, 368
BstX2I RGATCY 1 cut(s) 593
BstYI RGATCY 1 cut(s) 593
BtsIMutI CAGTG 1 cut(s) 595
Cac8I GCNNGC 2 cut(s) 48, 106
Cfr13I GGNCC 1 cut(s) 218
Csp6I GTAC 1 cut(s) 145
CviAII CATG 3 cut(s) 47, 167, 467
CviJI RGCY 8 cut(s) 191, 308, 359, 371, 529, 556, 680, 741
CviKI_1 RGCY 8 cut(s) 191, 308, 359, 371, 529, 556, 680, 741
CviQI GTAC 1 cut(s) 145
DdeI CTNAG 1 cut(s) 742
DpnI GATC 3 cut(s) 393, 595, 618
DpnII GATC 3 cut(s) 391, 593, 616
DraI TTTAAA 1 cut(s) 328
Eam1104I CTCTTC 1 cut(s) 327
EarI CTCTTC 1 cut(s) 327
Ecl136II GAGCTC 1 cut(s) 556
Eco105I TACGTA 1 cut(s) 31
Eco24I GRGCYC 1 cut(s) 558
Eco31I GGTCTC 1 cut(s) 167
Eco47I GGWCC 1 cut(s) 218
Eco53kI GAGCTC 1 cut(s) 556
Eco57I CTGAAG 1 cut(s) 637
EcoICRI GAGCTC 1 cut(s) 556
EcoO109I RGGNCCY 1 cut(s) 218
EcoRII CCWGG 1 cut(s) 411
EcoT38I GRGCYC 1 cut(s) 558
FaeI CATG 3 cut(s) 50, 170, 470
FaqI GGGAC 1 cut(s) 465
FatI CATG 3 cut(s) 46, 166, 466
FauNDI CATATG 1 cut(s) 448
FblI GTMKAC 1 cut(s) 600
Fnu4HI GCNGC 3 cut(s) 285, 288, 357
FriOI GRGCYC 1 cut(s) 558
Fsp4HI GCNGC 3 cut(s) 285, 288, 357
FspBI CTAG 2 cut(s) 477, 491
GluI GCNGC 3 cut(s) 285, 288, 357
Hin1II CATG 3 cut(s) 50, 170, 470
HindIII AAGCTT 1 cut(s) 306
HinfI GANTC 3 cut(s) 204, 335, 422
HphI GGTGA 1 cut(s) 107
Hpy166II GTNNAC 4 cut(s) 90, 145, 601, 764
Hpy188I TCNGA 3 cut(s) 156, 296, 576
Hpy188III TCNNGA 3 cut(s) 339, 491, 620
Hpy8I GTNNAC 4 cut(s) 90, 145, 601, 764
Hpy99I CGWCG 1 cut(s) 200
HpyAV CCTTC 3 cut(s) 282, 604, 661
HpyCH4III ACNGT 2 cut(s) 142, 541
HpyCH4IV ACGT 1 cut(s) 30
HpyCH4V TGCA 4 cut(s) 46, 113, 284, 628
HpyF10VI GCNNNNNNNGC 3 cut(s) 110, 197, 443
HpyF3I CTNAG 1 cut(s) 742
HpySE526I ACGT 1 cut(s) 30
Hsp92II CATG 3 cut(s) 50, 170, 470
Kzo9I GATC 3 cut(s) 391, 593, 616
LmnI GCTCC 2 cut(s) 188, 553
Lsp1109I GCAGC 3 cut(s) 296, 299, 368
LweI GCATC 1 cut(s) 199
MaeI CTAG 2 cut(s) 477, 491
MaeII ACGT 1 cut(s) 30
MaeIII GTNAC 2 cut(s) 336, 535
MalI GATC 3 cut(s) 393, 595, 618
MboI GATC 3 cut(s) 391, 593, 616
MboII GAAGA 3 cut(s) 6, 344, 707
MfeI CAATTG 1 cut(s) 531
MflI RGATCY 1 cut(s) 593
MhlI GDGCHC 2 cut(s) 466, 558
MlyI GAGTC 2 cut(s) 344, 431
MnlI CCTC 4 cut(s) 231, 493, 670, 705
MroXI GAANNNNTTC 1 cut(s) 498
MseI TTAA 2 cut(s) 327, 773
MspR9I CCNGG 1 cut(s) 413
MunI CAATTG 1 cut(s) 531
MvaI CCWGG 1 cut(s) 413
MwoI GCNNNNNNNGC 3 cut(s) 110, 197, 443
NdeI CATATG 1 cut(s) 448
NdeII GATC 3 cut(s) 391, 593, 616
NlaIII CATG 3 cut(s) 50, 170, 470
NlaIV GGNNCC 2 cut(s) 190, 219
NmuCI GTSAC 1 cut(s) 336
NspI RCATGY 1 cut(s) 50
PaeI GCATGC 1 cut(s) 50
PcsI WCGNNNNNNNCGW 1 cut(s) 204
PdmI GAANNNNTTC 1 cut(s) 498
PfeI GAWTC 1 cut(s) 204
PflMI CCANNNNNTGG 1 cut(s) 412
PkrI GCNGC 3 cut(s) 286, 289, 358
PleI GAGTC 2 cut(s) 343, 430
PpsI GAGTC 2 cut(s) 343, 430
Ppu21I YACGTR 1 cut(s) 31
PpuMI RGGWCCY 1 cut(s) 218
Psp124BI GAGCTC 1 cut(s) 558
Psp5II RGGWCCY 1 cut(s) 218
Psp6I CCWGG 1 cut(s) 411
PspGI CCWGG 1 cut(s) 411
PspN4I GGNNCC 2 cut(s) 190, 219
PspPI GGNCC 1 cut(s) 218
PspPPI RGGWCCY 1 cut(s) 218
PsuI RGATCY 1 cut(s) 593
RsaI GTAC 1 cut(s) 146
RsaNI GTAC 1 cut(s) 145
SacI GAGCTC 1 cut(s) 558
SaqAI TTAA 2 cut(s) 327, 773
SatI GCNGC 3 cut(s) 285, 288, 357
Sau3AI GATC 3 cut(s) 391, 593, 616
Sau96I GGNCC 1 cut(s) 218
SchI GAGTC 2 cut(s) 344, 431
ScrFI CCNGG 1 cut(s) 413
SduI GDGCHC 2 cut(s) 466, 558
SfaNI GCATC 1 cut(s) 199
SfcI CTRYAG 1 cut(s) 597
SinI GGWCC 1 cut(s) 218
SnaBI TACGTA 1 cut(s) 31
SpeI ACTAGT 1 cut(s) 476
SphI GCATGC 1 cut(s) 50
SsiI CCGC 3 cut(s) 300, 409, 512
SspMI CTAG 2 cut(s) 477, 491
SstI GAGCTC 1 cut(s) 558
StyD4I CCNGG 1 cut(s) 411
TaaI ACNGT 2 cut(s) 142, 541
TaiI ACGT 1 cut(s) 33
TaqI TCGA 3 cut(s) 207, 420, 472
TfiI GAWTC 1 cut(s) 204
Tru1I TTAA 2 cut(s) 327, 773
Tru9I TTAA 2 cut(s) 327, 773
TscAI CASTG 1 cut(s) 595
TseFI GTSAC 1 cut(s) 336
TseI GCWGC 3 cut(s) 284, 287, 356
Tsp45I GTSAC 1 cut(s) 336
TspDTI ATGAA 2 cut(s) 218, 229
TspGWI ACGGA 1 cut(s) 264
TspRI CASTG 1 cut(s) 595
Van91I CCANNNNNTGG 1 cut(s) 412
VpaK11BI GGWCC 1 cut(s) 218
XapI RAATTY 3 cut(s) 225, 581, 733
XbaI TCTAGA 1 cut(s) 490
XceI RCATGY 1 cut(s) 50
XmiI GTMKAC 1 cut(s) 600
XmnI GAANNNNTTC 1 cut(s) 498
XspI CTAG 2 cut(s) 477, 491
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.