Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0000613

Physical Location & Seq

Genomic Coordinates Forward (+)

31938622 .. 31939851

Gene Structure 1230 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG160600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGCATTCGATCGACAAAACCAGCAAAACAGACCCAAGCTCCACTGCAACTCTTCGCTCTTCGCCCTCCCCCAAGCCACCGCAGAACAGATCGATTCATTCGATCCCCAAAACCAGCAAAACAGACCCAAGCGACCGCAGCTCTTCGCTCTTCACCATCCCCCAAGCCATCGCAGCTCCACCGCAGCTCTTCGCTCGTCGCCCTCCCCCAAGCCACCGCAGAACAGATCGATTCATTCGATCCCCAAAACCAGCAAAACAGACCCAGCCACCGCAGCTCTTCGCTCTTCGCTCTTCCGCCACCTTCCCTCAGTTGAAGCCTGAAGAAGTTACTGGCATTGTGAATGACTTTAATGAACCTGGAACACTTGCTCCAACTGGGTTGTATCTTGGAGGCACTAAGTACATGGTGATCCAAGGAGAGCCTGGAGCTGTCATTAGAGGGAAGAAGGGCCCTGGAGGTGTTACTGTGAAGAAGACTACTCTGGCATTGCTCATTGGGATCTATGATGAGCCAATGACTCCCGGACAATGCAACATGATTGTGGAGAGGCTTGGCGATTATCTGGTTGAGCAGGGTCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0003785 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005938 GO:0008064 GO:0008092 GO:0008104 GO:0008150 GO:0009987 GO:0010639 GO:0015629 GO:0016043 GO:0030832 GO:0030833 GO:0030837 GO:0031333 GO:0032271 GO:0032272 GO:0032507 GO:0032535 GO:0032956 GO:0032970 GO:0033036 GO:0033043 GO:0034613 GO:0042989 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0044087 GO:0044424 GO:0044444 GO:0044464 GO:0045185 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0051179 GO:0051235 GO:0051493 GO:0051494 GO:0051641 GO:0051651 GO:0065007 GO:0065008 GO:0070727 GO:0071840 GO:0071944 GO:0090066 GO:0099568 GO:0110053 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

ko04013 ko04015 ko04810 ko05131 ko05132 map04013 map04015 map04810 map05131 map05132

Pfam Domains

Protein Families

Profilin

Protein Analysis

194

Amino Acids

21.0

Weight (kDa)

9.95

Isoelectric Point (pI)

66.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Profilin	PF00235	98 - 194	2.8e-28	Profilin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000613)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13060 AT1G13060 AT1G13060 AT3G26340
fragaria_vesca	FvH4_1g01201 FvH4_4g24020 FvH4_6g30500
malus_domestica	MD10G1030600.v1.1 MD16G1116800.v1.1
prunus_persica	Prupe.1G229300_v2.0.a1 Prupe.1G229300_v2.0.a1 Prupe.1G229300_v2.0.a1
pyrus_communis	pycom10g01980 pycom13g10110
rosa_chinensis	RchiOBHm_Chr4g0430701 RchiOBHm_Chr5g0003071
rosa_laevigata	RLG00000006954 RLG00000031090 RLG00000031094 RLG00000031099 RLG00000031107 RLG00000031108 RLG00000031111 RLG00000031116 RLG00000032188
rosa_multiflora	Rmu_sc0000131.1_g000009 Rmu_sc0000146.1_g000015 Rmu_sc0002209.1_g000027
rosa_roxburghii	Rroxscaffold_1G00061170 Rroxscaffold_1G00061240 Rroxscaffold_1G00061300 Rroxscaffold_1G00072510 Rroxscaffold_1G00072750 Rroxscaffold_1G00072760 Rroxscaffold_5G00372440 Rroxscaffold_6G00429800 Rroxscaffold_6G00429810 Rroxscaffold_6G00429820 Rroxscaffold_6G00429850
rosa_rugosa	Rorug04G0245300 Rorug04G0402100 Rorug04G0402100 Rorug04G0402100 Rorug05G0025600 Rorug05G0026200
rosa_samantha	Rh3BG233200 Rh3DG047000 Rh3DG047300 Rh3DG047400 Rh3DG047800 Rh4AG053100 Rh4AG227500 Rh4BG230300 Rh4BG309300 Rh4CG242400 Rh4DG160600 Rh4DG225800 Rh5AG024300 Rh5AG024400 Rh5AG024700 Rh5AG027100 Rh5AG119900 Rh5BG118400 Rh5CG027100 Rh5CG027300 Rh5CG027700 Rh5CG128900 Rh5DG026900 Rh5DG027000 Rh5DG027700 Rh5DG028000 Rh5DG028500
rosa_wichuraiana	Rw0G010900 Rw3G003590 Rw4G026180 Rw5G002310 Rw5G002480 Rw5G002600 Rw5G010340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	80, 136, 182, 217, 272, 297
AclWI	GGATC	4 cut(s)	97, 234, 406, 509
AcuI	CTGAAG	1 cut(s)	342
AfaI	GTAC	1 cut(s)	404
AgsI	TTSAA	1 cut(s)	316
AjnI	CCWGG	3 cut(s)	358, 424, 454
AloI	GAACNNNNNNTCC	2 cut(s)	355, 387
AluBI	AGCT	6 cut(s)	39, 141, 176, 187, 277, 431
AluI	AGCT	6 cut(s)	39, 141, 176, 187, 277, 431
AlwI	GGATC	4 cut(s)	97, 234, 406, 509
AoxI	GGCC	1 cut(s)	451
ApaI	GGGCCC	1 cut(s)	455
ApeKI	GCWGC	4 cut(s)	138, 173, 184, 274
AspS9I	GGNCC	2 cut(s)	451, 452
AsuC2I	CCSGG	1 cut(s)	525
AsuHPI	GGTGA	2 cut(s)	145, 421
BaeGI	GKGCMC	1 cut(s)	455
BanII	GRGCYC	1 cut(s)	455
BbsI	GAAGAC	1 cut(s)	482
BbvI	GCAGC	4 cut(s)	150, 185, 196, 286
BccI	CCATC	2 cut(s)	164, 176
BciT130I	CCWGG	3 cut(s)	360, 426, 456
BcnI	CCSGG	1 cut(s)	525
BfaI	CTAG	1 cut(s)	583
BisI	GCNGC	4 cut(s)	139, 174, 185, 275
BlsI	GCNGC	4 cut(s)	140, 175, 186, 276
Bme1390I	CCNGG	4 cut(s)	360, 426, 456, 525
BmgT120I	GGNCC	2 cut(s)	451, 452
BmiI	GGNNCC	1 cut(s)	453
BmrFI	CCNGG	4 cut(s)	360, 426, 456, 525
BmrI	ACTGGG	1 cut(s)	387
BmuI	ACTGGG	1 cut(s)	387
BpiI	GAAGAC	1 cut(s)	482
BpmI	CTGGAG	2 cut(s)	447, 477
BpuMI	CCSGG	1 cut(s)	525
Bsa29I	ATCGAT	2 cut(s)	92, 229
BsaJI	CCNNGG	2 cut(s)	415, 454
BsaXI	ACNNNNNCTCC	4 cut(s)	23, 53, 355, 385
Bse1I	ACTGG	2 cut(s)	337, 382
Bse3DI	GCAATG	1 cut(s)	488
BseBI	CCWGG	3 cut(s)	360, 426, 456
BseCI	ATCGAT	2 cut(s)	92, 229
BseDI	CCNNGG	2 cut(s)	415, 454
BseGI	GGATG	1 cut(s)	156
BseMI	GCAATG	1 cut(s)	488
BseMII	CTCAG	1 cut(s)	323
BseNI	ACTGG	2 cut(s)	337, 382
BseSI	GKGCMC	1 cut(s)	455
BseXI	GCAGC	4 cut(s)	150, 185, 196, 286
BseYI	CCCAGC	1 cut(s)	264
Bsh1285I	CGRYCG	2 cut(s)	12, 136
BshFI	GGCC	1 cut(s)	453
BshVI	ATCGAT	2 cut(s)	92, 229
BsiEI	CGRYCG	2 cut(s)	12, 136
BsiSI	CCGG	1 cut(s)	525
BsmI	GAATGC	1 cut(s)	4
BsnI	GGCC	1 cut(s)	453
Bsp120I	GGGCCC	1 cut(s)	451
Bsp1286I	GDGCHC	1 cut(s)	455
Bsp143I	GATC	7 cut(s)	9, 89, 102, 226, 239, 411, 501
BspACI	CCGC	6 cut(s)	80, 136, 182, 217, 272, 297
BspANI	GGCC	1 cut(s)	453
BspCNI	CTCAG	1 cut(s)	322
BspDI	ATCGAT	2 cut(s)	92, 229
BspLI	GGNNCC	1 cut(s)	453
BspPI	GGATC	4 cut(s)	97, 234, 406, 509
BspQI	GCTCTTC	7 cut(s)	64, 148, 155, 194, 284, 291, 298
BsrDI	GCAATG	1 cut(s)	488
BsrI	ACTGG	2 cut(s)	337, 382
BssECI	CCNNGG	2 cut(s)	415, 454
BssMI	GATC	7 cut(s)	9, 89, 102, 226, 239, 411, 501
BssT1I	CCWWGG	1 cut(s)	415
Bst2UI	CCWGG	3 cut(s)	360, 426, 456
Bst4CI	ACNGT	1 cut(s)	469
Bst6I	CTCTTC	8 cut(s)	57, 64, 148, 155, 194, 284, 291, 298
BstDEI	CTNAG	2 cut(s)	309, 399
BstF5I	GGATG	1 cut(s)	156
BstKTI	GATC	7 cut(s)	12, 92, 105, 229, 242, 414, 504
BstMBI	GATC	7 cut(s)	9, 89, 102, 226, 239, 411, 501
BstMCI	CGRYCG	2 cut(s)	12, 136
BstMWI	GCNNNNNNNGC	3 cut(s)	138, 173, 274
BstNI	CCWGG	3 cut(s)	360, 426, 456
BstSCI	CCNGG	4 cut(s)	358, 424, 454, 523
BstSLI	GKGCMC	1 cut(s)	455
BstV1I	GCAGC	4 cut(s)	150, 185, 196, 286
BstV2I	GAAGAC	1 cut(s)	482
BstX2I	RGATCY	1 cut(s)	501
BstYI	RGATCY	1 cut(s)	501
Bsu15I	ATCGAT	2 cut(s)	92, 229
BsuRI	GGCC	1 cut(s)	453
BsuTUI	ATCGAT	2 cut(s)	92, 229
BtgZI	GCGATG	1 cut(s)	154
BtsCI	GGATG	1 cut(s)	156
BtsI	GCAGTG	1 cut(s)	42
BtsIMutI	CAGTG	1 cut(s)	42
Cfr13I	GGNCC	2 cut(s)	451, 452
ClaI	ATCGAT	2 cut(s)	92, 229
Csp6I	GTAC	1 cut(s)	403
CviAII	CATG	2 cut(s)	406, 538
CviQI	GTAC	1 cut(s)	403
DdeI	CTNAG	2 cut(s)	309, 399
DpnI	GATC	7 cut(s)	11, 91, 104, 228, 241, 413, 503
DpnII	GATC	7 cut(s)	9, 89, 102, 226, 239, 411, 501
Eam1104I	CTCTTC	8 cut(s)	57, 64, 148, 155, 194, 284, 291, 298
EarI	CTCTTC	8 cut(s)	57, 64, 148, 155, 194, 284, 291, 298
EciI	GGCGGA	1 cut(s)	286
Eco130I	CCWWGG	1 cut(s)	415
Eco24I	GRGCYC	1 cut(s)	455
Eco57I	CTGAAG	1 cut(s)	342
EcoO109I	RGGNCCY	2 cut(s)	451, 452
EcoRII	CCWGG	3 cut(s)	358, 424, 454
EcoT14I	CCWWGG	1 cut(s)	415
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	455
ErhI	CCWWGG	1 cut(s)	415
FaeI	CATG	2 cut(s)	409, 541
FaiI	YATR	3 cut(s)	407, 507, 539
FatI	CATG	2 cut(s)	405, 537
Fnu4HI	GCNGC	4 cut(s)	139, 174, 185, 275
FokI	GGATG	1 cut(s)	143
FriOI	GRGCYC	1 cut(s)	455
Fsp4HI	GCNGC	4 cut(s)	139, 174, 185, 275
FspBI	CTAG	1 cut(s)	583
GluI	GCNGC	4 cut(s)	139, 174, 185, 275
GsaI	CCCAGC	1 cut(s)	268
GsuI	CTGGAG	2 cut(s)	447, 477
HaeIII	GGCC	1 cut(s)	453
HapII	CCGG	1 cut(s)	525
Hin1II	CATG	2 cut(s)	409, 541
HinfI	GANTC	3 cut(s)	94, 231, 520
HpaII	CCGG	1 cut(s)	525
HphI	GGTGA	2 cut(s)	145, 421
Hpy99I	CGWCG	1 cut(s)	201
HpyAV	CCTTC	2 cut(s)	313, 442
HpyCH4III	ACNGT	1 cut(s)	469
HpyCH4V	TGCA	3 cut(s)	4, 47, 534
HpyF10VI	GCNNNNNNNGC	3 cut(s)	138, 173, 274
HpyF3I	CTNAG	2 cut(s)	309, 399
Hsp92II	CATG	2 cut(s)	409, 541
Kzo9I	GATC	7 cut(s)	9, 89, 102, 226, 239, 411, 501
LguI	GCTCTTC	7 cut(s)	64, 148, 155, 194, 284, 291, 298
LmnI	GCTCC	4 cut(s)	44, 181, 376, 428
Lsp1109I	GCAGC	4 cut(s)	150, 185, 196, 286
MaeI	CTAG	1 cut(s)	583
MaeIII	GTNAC	2 cut(s)	328, 463
MalI	GATC	7 cut(s)	11, 91, 104, 228, 241, 413, 503
MboI	GATC	7 cut(s)	9, 89, 102, 226, 239, 411, 501
MflI	RGATCY	1 cut(s)	501
MhlI	GDGCHC	1 cut(s)	455
MlyI	GAGTC	1 cut(s)	514
MmeI	TCCRAC	1 cut(s)	398
MnlI	CCTC	7 cut(s)	76, 213, 318, 386, 434, 452, 543
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	1 cut(s)	351
MslI	CAYNNNNRTG	1 cut(s)	542
MspI	CCGG	1 cut(s)	525
MspR9I	CCNGG	4 cut(s)	360, 426, 456, 525
Mva1269I	GAATGC	1 cut(s)	4
MvaI	CCWGG	3 cut(s)	360, 426, 456
MwoI	GCNNNNNNNGC	3 cut(s)	138, 173, 274
NciI	CCSGG	1 cut(s)	525
NdeII	GATC	7 cut(s)	9, 89, 102, 226, 239, 411, 501
NlaIII	CATG	2 cut(s)	409, 541
NlaIV	GGNNCC	1 cut(s)	453
NsiI	ATGCAT	1 cut(s)	6
PciSI	GCTCTTC	7 cut(s)	64, 148, 155, 194, 284, 291, 298
PcsI	WCGNNNNNNNCGW	2 cut(s)	98, 235
PctI	GAATGC	1 cut(s)	4
PfeI	GAWTC	2 cut(s)	94, 231
PfoI	TCCNGGA	1 cut(s)	523
PkrI	GCNGC	4 cut(s)	140, 175, 186, 276
Ple19I	CGATCG	1 cut(s)	12
PleI	GAGTC	1 cut(s)	514
PpsI	GAGTC	1 cut(s)	514
Psp6I	CCWGG	3 cut(s)	358, 424, 454
PspFI	CCCAGC	1 cut(s)	264
PspGI	CCWGG	3 cut(s)	358, 424, 454
PspN4I	GGNNCC	1 cut(s)	453
PspOMI	GGGCCC	1 cut(s)	451
PspPI	GGNCC	2 cut(s)	451, 452
PsuI	RGATCY	1 cut(s)	501
PvuI	CGATCG	1 cut(s)	12
RsaI	GTAC	1 cut(s)	404
RsaNI	GTAC	1 cut(s)	403
RseI	CAYNNNNRTG	1 cut(s)	542
SapI	GCTCTTC	7 cut(s)	64, 148, 155, 194, 284, 291, 298
SaqAI	TTAA	1 cut(s)	351
SatI	GCNGC	4 cut(s)	139, 174, 185, 275
Sau3AI	GATC	7 cut(s)	9, 89, 102, 226, 239, 411, 501
Sau96I	GGNCC	2 cut(s)	451, 452
SchI	GAGTC	1 cut(s)	514
ScrFI	CCNGG	4 cut(s)	360, 426, 456, 525
SduI	GDGCHC	1 cut(s)	455
SetI	ASST	9 cut(s)	41, 143, 178, 189, 279, 305, 361, 433, 463
SmiMI	CAYNNNNRTG	1 cut(s)	542
SsiI	CCGC	6 cut(s)	80, 136, 182, 217, 272, 297
SspMI	CTAG	1 cut(s)	583
StyD4I	CCNGG	4 cut(s)	358, 424, 454, 523
StyI	CCWWGG	1 cut(s)	415
TaaI	ACNGT	1 cut(s)	469
TaqI	TCGA	6 cut(s)	8, 12, 92, 101, 229, 238
TatI	WGTACW	1 cut(s)	402
TfiI	GAWTC	2 cut(s)	94, 231
Tru1I	TTAA	1 cut(s)	351
Tru9I	TTAA	1 cut(s)	351
TscAI	CASTG	1 cut(s)	49
TseI	GCWGC	4 cut(s)	138, 173, 184, 274
TspDTI	ATGAA	3 cut(s)	86, 223, 369
TspRI	CASTG	1 cut(s)	49
XcmI	CCANNNNNNNNNTGG	1 cut(s)	422
XspI	CTAG	1 cut(s)	583
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.