Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0000613

Physical Location & Seq

Genomic Coordinates Reverse (-)

24226861 .. 24230078

Gene Structure 3218 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G229300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGAAGCTTGATACTAGCGGTCTTGAATCAGCTGCGCCACTGGTTGGCGCGAGCAGTGGGTTTCTTGATGGGTTTGCAGATGCTCCATCGTTCGAGGTTCCTACTACCAATGATTTTGATGGCTTTCAGAAAGAAGCTATTCAAATGGTGAAGCCTGCGAAGGGGACAACCACACTTGCGTTTATCTTCAAGGATGGCGTCATGGTTGCCGCTGATTCTCGAGCTAGCATGGGAGGATATATATCCTCACAATCTGTGAAGAAAATTATTGAAATCAATCCTTACATGCTTGGTACAATGGCTGGAGGAGCCGCTGACTGCCAGTTTTGGCATAGAAATCTGGGGATTAAGGTATGCCGGTTGCATGAATTGGCAAACAAGCGCAGAATTTCAGTTACAGGGGCATCAAAGCTGTTGGCAAACATTCTGTACTCTTACCGTGGCATGGGTCTCTCTGTTGGGACCATGATAGCTGGATGGGATGAAACGGGTCCTGGACTTTATTATGTGGACAGTGAGGGAGGAAGATTGAAAGGCATGCGGTTTTCAGTTGGATCTGGTTCACCATATGCTTATGGTGTTCTCGATGATGGGTACCGGTACGATATGTCTGTTGAAGAAGCTGCTGAGTTGGCTAGAAGGGCTATATATCATGCAACATTCCGTGATGGAGCCAGTGGTGGAGTTGCAAGCGTTTATCACGTGGGACCAAATGGATGGAAGAAGCTTTCTGGCGACGATGTTGGGGAGCTTCACTATCACTATTATCCTGTAGTCGAAGGTGCAGTTGAACAGGAAATGGTTGAAGTAGCTGCGGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005839 GO:0019774 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

Proteasome

Protein Analysis

274

Amino Acids

29.22

Weight (kDa)

5.54

Isoelectric Point (pI)

36.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000613)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13060 AT1G13060 AT1G13060 AT3G26340
fragaria_vesca	FvH4_1g01201 FvH4_4g24020 FvH4_6g30500
malus_domestica	MD10G1030600.v1.1 MD16G1116800.v1.1
prunus_persica	Prupe.1G229300_v2.0.a1 Prupe.1G229300_v2.0.a1 Prupe.1G229300_v2.0.a1
pyrus_communis	pycom10g01980 pycom13g10110
rosa_chinensis	RchiOBHm_Chr4g0430701 RchiOBHm_Chr5g0003071
rosa_laevigata	RLG00000006954 RLG00000031090 RLG00000031094 RLG00000031099 RLG00000031107 RLG00000031108 RLG00000031111 RLG00000031116 RLG00000032188
rosa_multiflora	Rmu_sc0000131.1_g000009 Rmu_sc0000146.1_g000015 Rmu_sc0002209.1_g000027
rosa_roxburghii	Rroxscaffold_1G00061170 Rroxscaffold_1G00061240 Rroxscaffold_1G00061300 Rroxscaffold_1G00072510 Rroxscaffold_1G00072750 Rroxscaffold_1G00072760 Rroxscaffold_5G00372440 Rroxscaffold_6G00429800 Rroxscaffold_6G00429810 Rroxscaffold_6G00429820 Rroxscaffold_6G00429850
rosa_rugosa	Rorug04G0245300 Rorug04G0402100 Rorug04G0402100 Rorug04G0402100 Rorug05G0025600 Rorug05G0026200
rosa_samantha	Rh3BG233200 Rh3DG047000 Rh3DG047300 Rh3DG047400 Rh3DG047800 Rh4AG053100 Rh4AG227500 Rh4BG230300 Rh4BG309300 Rh4CG242400 Rh4DG160600 Rh4DG225800 Rh5AG024300 Rh5AG024400 Rh5AG024700 Rh5AG027100 Rh5AG119900 Rh5BG118400 Rh5CG027100 Rh5CG027300 Rh5CG027700 Rh5CG128900 Rh5DG026900 Rh5DG027000 Rh5DG027700 Rh5DG028000 Rh5DG028500
rosa_wichuraiana	Rw0G010900 Rw3G003590 Rw4G026180 Rw5G002310 Rw5G002480 Rw5G002600 Rw5G010340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	594
AccB1I	GGYRCC	1 cut(s)	594
AccB7I	CCANNNNNTGG	1 cut(s)	44
AccII	CGCG	1 cut(s)	50
AciI	CCGC	5 cut(s)	18, 210, 312, 541, 815
AclWI	GGATC	1 cut(s)	562
AcsI	RAATTY	1 cut(s)	387
AcvI	CACGTG	1 cut(s)	703
AcyI	GRCGYC	1 cut(s)	198
AfaI	GTAC	4 cut(s)	295, 431, 596, 602
AfiI	CCNNNNNNNGG	3 cut(s)	44, 161, 445
AgeI	ACCGGT	1 cut(s)	597
AgsI	TTSAA	8 cut(s)	26, 143, 190, 272, 532, 617, 791, 806
AjnI	CCWGG	1 cut(s)	493
Alw26I	GTCTC	1 cut(s)	455
AlwI	GGATC	1 cut(s)	562
Ama87I	CYCGRG	1 cut(s)	219
AoxI	GGCC	1 cut(s)	816
ApeKI	GCWGC	3 cut(s)	32, 623, 812
ApoI	RAATTY	1 cut(s)	387
AsiGI	ACCGGT	1 cut(s)	597
Asp700I	GAANNNNTTC	1 cut(s)	138
Asp718I	GGTACC	1 cut(s)	594
AspLEI	GCGC	3 cut(s)	37, 50, 384
AspS9I	GGNCC	3 cut(s)	462, 491, 707
AsuHPI	GGTGA	2 cut(s)	160, 555
AsuNHI	GCTAGC	1 cut(s)	224
AvaI	CYCGRG	1 cut(s)	219
AvaII	GGWCC	3 cut(s)	462, 491, 707
BanI	GGYRCC	1 cut(s)	594
BbrPI	CACGTG	1 cut(s)	703
BbvI	GCAGC	3 cut(s)	19, 610, 799
BccI	CCATC	8 cut(s)	62, 94, 113, 188, 471, 584, 662, 711
BciT130I	CCWGG	1 cut(s)	495
BcoDI	GTCTC	1 cut(s)	455
BfaI	CTAG	3 cut(s)	15, 225, 636
BfmI	CTRYAG	1 cut(s)	771
BisI	GCNGC	6 cut(s)	33, 210, 312, 624, 813, 816
BlsI	GCNGC	6 cut(s)	34, 211, 313, 625, 814, 817
Bme1390I	CCNGG	1 cut(s)	495
Bme18I	GGWCC	3 cut(s)	462, 491, 707
BmeT110I	CYCGRG	1 cut(s)	219
BmgT120I	GGNCC	3 cut(s)	462, 491, 707
BmiI	GGNNCC	7 cut(s)	99, 310, 463, 492, 596, 673, 708
BmrFI	CCNGG	1 cut(s)	495
BmsI	GCATC	2 cut(s)	70, 413
BmtI	GCTAGC	1 cut(s)	228
BpmI	CTGGAG	1 cut(s)	324
BsaAI	YACGTR	1 cut(s)	703
BsaBI	GATNNNNATC	1 cut(s)	241
BsaHI	GRCGYC	1 cut(s)	198
BsaI	GGTCTC	1 cut(s)	455
BsaJI	CCNNGG	1 cut(s)	439
BsaWI	WCCGGW	1 cut(s)	597
Bsc4I	CCNNNNNNNGG	3 cut(s)	44, 161, 445
Bse118I	RCCGGY	2 cut(s)	357, 597
Bse1I	ACTGG	3 cut(s)	45, 322, 675
Bse8I	GATNNNNATC	1 cut(s)	241
BseBI	CCWGG	1 cut(s)	495
BseDI	CCNNGG	1 cut(s)	439
BseGI	GGATG	4 cut(s)	199, 482, 487, 722
BseJI	GATNNNNATC	1 cut(s)	241
BseLI	CCNNNNNNNGG	3 cut(s)	44, 161, 445
BseMII	CTCAG	1 cut(s)	618
BseNI	ACTGG	3 cut(s)	45, 322, 675
BseRI	GAGGAG	1 cut(s)	321
BseXI	GCAGC	3 cut(s)	19, 610, 799
BsgI	GTGCAG	1 cut(s)	804
Bsh1236I	CGCG	1 cut(s)	50
BshFI	GGCC	1 cut(s)	818
BshNI	GGYRCC	1 cut(s)	594
BshTI	ACCGGT	1 cut(s)	597
BsiHKCI	CYCGRG	1 cut(s)	219
BsiSI	CCGG	2 cut(s)	358, 598
BslFI	GGGAC	3 cut(s)	178, 475, 720
BslI	CCNNNNNNNGG	3 cut(s)	44, 161, 445
BsmAI	GTCTC	1 cut(s)	455
BsmFI	GGGAC	3 cut(s)	178, 475, 720
BsnI	GGCC	1 cut(s)	818
Bso31I	GGTCTC	1 cut(s)	455
BsoBI	CYCGRG	1 cut(s)	219
Bsp143I	GATC	1 cut(s)	554
BspACI	CCGC	5 cut(s)	18, 210, 312, 541, 815
BspANI	GGCC	1 cut(s)	818
BspCNI	CTCAG	1 cut(s)	619
BspFNI	CGCG	1 cut(s)	50
BspLI	GGNNCC	7 cut(s)	99, 310, 463, 492, 596, 673, 708
BspOI	GCTAGC	1 cut(s)	228
BspPI	GGATC	1 cut(s)	562
BspT107I	GGYRCC	1 cut(s)	594
BspTNI	GGTCTC	1 cut(s)	455
BsrFI	RCCGGY	2 cut(s)	357, 597
BsrI	ACTGG	3 cut(s)	45, 322, 675
BssAI	RCCGGY	2 cut(s)	357, 597
BssECI	CCNNGG	1 cut(s)	439
BssMI	GATC	1 cut(s)	554
BssNI	GRCGYC	1 cut(s)	198
Bst2UI	CCWGG	1 cut(s)	495
Bst4CI	ACNGT	2 cut(s)	440, 515
BstACI	GRCGYC	1 cut(s)	198
BstBAI	YACGTR	1 cut(s)	703
BstC8I	GCNNGC	5 cut(s)	52, 156, 226, 539, 691
BstDEI	CTNAG	1 cut(s)	627
BstDSI	CCRYGG	1 cut(s)	439
BstF5I	GGATG	4 cut(s)	199, 482, 487, 722
BstFNI	CGCG	1 cut(s)	50
BstHHI	GCGC	3 cut(s)	37, 50, 384
BstKTI	GATC	1 cut(s)	557
BstMAI	GTCTC	1 cut(s)	455
BstMBI	GATC	1 cut(s)	554
BstMWI	GCNNNNNNNGC	3 cut(s)	308, 632, 641
BstNI	CCWGG	1 cut(s)	495
BstNSI	RCATGY	2 cut(s)	289, 541
BstSCI	CCNGG	1 cut(s)	493
BstSFI	CTRYAG	1 cut(s)	771
BstUI	CGCG	1 cut(s)	50
BstV1I	GCAGC	3 cut(s)	19, 610, 799
BstX2I	RGATCY	1 cut(s)	554
BstXI	CCANNNNNNTGG	1 cut(s)	717
BstYI	RGATCY	1 cut(s)	554
BsuRI	GGCC	1 cut(s)	818
BtgI	CCRYGG	1 cut(s)	439
BtsCI	GGATG	4 cut(s)	199, 482, 487, 722
BtsI	GCAGTG	1 cut(s)	61
BtsIMutI	CAGTG	4 cut(s)	38, 61, 520, 682
Cac8I	GCNNGC	5 cut(s)	52, 156, 226, 539, 691
CfoI	GCGC	3 cut(s)	37, 50, 384
Cfr10I	RCCGGY	2 cut(s)	357, 597
Cfr13I	GGNCC	3 cut(s)	462, 491, 707
CseI	GACGC	1 cut(s)	187
Csp6I	GTAC	4 cut(s)	294, 430, 595, 601
CspAI	ACCGGT	1 cut(s)	597
CviAII	CATG	8 cut(s)	202, 229, 286, 365, 445, 466, 538, 653
CviQI	GTAC	4 cut(s)	294, 430, 595, 601
DdeI	CTNAG	1 cut(s)	627
DpnI	GATC	1 cut(s)	556
DpnII	GATC	1 cut(s)	554
Eco31I	GGTCTC	1 cut(s)	455
Eco47I	GGWCC	3 cut(s)	462, 491, 707
Eco72I	CACGTG	1 cut(s)	703
Eco88I	CYCGRG	1 cut(s)	219
EcoO109I	RGGNCCY	1 cut(s)	491
EcoRII	CCWGG	1 cut(s)	493
FaeI	CATG	8 cut(s)	205, 232, 289, 368, 448, 469, 541, 656
FaqI	GGGAC	3 cut(s)	178, 475, 720
FatI	CATG	8 cut(s)	201, 228, 285, 364, 444, 465, 537, 652
FauNDI	CATATG	1 cut(s)	568
Fnu4HI	GCNGC	6 cut(s)	33, 210, 312, 624, 813, 816
FokI	GGATG	4 cut(s)	206, 489, 494, 729
Fsp4HI	GCNGC	6 cut(s)	33, 210, 312, 624, 813, 816
FspBI	CTAG	3 cut(s)	15, 225, 636
GlaI	GCGC	3 cut(s)	36, 49, 383
GluI	GCNGC	6 cut(s)	33, 210, 312, 624, 813, 816
GsuI	CTGGAG	1 cut(s)	324
HaeIII	GGCC	1 cut(s)	818
HapII	CCGG	2 cut(s)	358, 598
HgaI	GACGC	1 cut(s)	187
HhaI	GCGC	3 cut(s)	37, 50, 384
Hin1I	GRCGYC	1 cut(s)	198
Hin1II	CATG	8 cut(s)	205, 232, 289, 368, 448, 469, 541, 656
Hin6I	GCGC	3 cut(s)	35, 48, 382
HinP1I	GCGC	3 cut(s)	35, 48, 382
HindIII	AAGCTT	2 cut(s)	5, 725
HinfI	GANTC	2 cut(s)	26, 215
HpaII	CCGG	2 cut(s)	358, 598
HphI	GGTGA	2 cut(s)	160, 555
Hpy166II	GTNNAC	2 cut(s)	511, 563
Hpy188I	TCNGA	1 cut(s)	129
Hpy188III	TCNNGA	4 cut(s)	23, 65, 219, 584
Hpy8I	GTNNAC	2 cut(s)	511, 563
Hpy99I	CGWCG	1 cut(s)	740
HpyAV	CCTTC	3 cut(s)	154, 633, 773
HpyCH4III	ACNGT	2 cut(s)	440, 515
HpyCH4IV	ACGT	1 cut(s)	702
HpyCH4V	TGCA	5 cut(s)	77, 364, 656, 689, 785
HpyF10VI	GCNNNNNNNGC	3 cut(s)	308, 632, 641
HpyF3I	CTNAG	1 cut(s)	627
HpySE526I	ACGT	1 cut(s)	702
Hsp92I	GRCGYC	1 cut(s)	198
Hsp92II	CATG	8 cut(s)	205, 232, 289, 368, 448, 469, 541, 656
HspAI	GCGC	3 cut(s)	35, 48, 382
KpnI	GGTACC	1 cut(s)	598
Kzo9I	GATC	1 cut(s)	554
LmnI	GCTCC	4 cut(s)	88, 308, 671, 748
Lsp1109I	GCAGC	3 cut(s)	19, 610, 799
LweI	GCATC	2 cut(s)	70, 413
MaeI	CTAG	3 cut(s)	15, 225, 636
MaeII	ACGT	1 cut(s)	702
MaeIII	GTNAC	1 cut(s)	394
MalI	GATC	1 cut(s)	556
MboI	GATC	1 cut(s)	554
MboII	GAAGA	5 cut(s)	178, 271, 537, 629, 733
MflI	RGATCY	1 cut(s)	554
MluCI	AATT	3 cut(s)	264, 368, 387
MmeI	TCCRAC	1 cut(s)	532
MnlI	CCTC	6 cut(s)	88, 227, 256, 299, 511, 515
MroXI	GAANNNNTTC	1 cut(s)	138
MseI	TTAA	1 cut(s)	348
MspA1I	CMGCKG	3 cut(s)	32, 212, 314
MspI	CCGG	2 cut(s)	358, 598
MspR9I	CCNGG	1 cut(s)	495
MvaI	CCWGG	1 cut(s)	495
MvnI	CGCG	1 cut(s)	50
MwoI	GCNNNNNNNGC	3 cut(s)	308, 632, 641
NdeI	CATATG	1 cut(s)	568
NdeII	GATC	1 cut(s)	554
NheI	GCTAGC	1 cut(s)	224
NlaIII	CATG	8 cut(s)	205, 232, 289, 368, 448, 469, 541, 656
NlaIV	GGNNCC	7 cut(s)	99, 310, 463, 492, 596, 673, 708
NspI	RCATGY	2 cut(s)	289, 541
PaeI	GCATGC	1 cut(s)	541
PaeR7I	CTCGAG	1 cut(s)	219
PdmI	GAANNNNTTC	1 cut(s)	138
PfeI	GAWTC	2 cut(s)	26, 215
PflMI	CCANNNNNTGG	1 cut(s)	44
PfoI	TCCNGGA	1 cut(s)	493
PinAI	ACCGGT	1 cut(s)	597
PkrI	GCNGC	6 cut(s)	34, 211, 313, 625, 814, 817
PmaCI	CACGTG	1 cut(s)	703
PmlI	CACGTG	1 cut(s)	703
Ppu21I	YACGTR	1 cut(s)	703
PpuMI	RGGWCCY	1 cut(s)	491
Psp5II	RGGWCCY	1 cut(s)	491
Psp6I	CCWGG	1 cut(s)	493
PspCI	CACGTG	1 cut(s)	703
PspGI	CCWGG	1 cut(s)	493
PspN4I	GGNNCC	7 cut(s)	99, 310, 463, 492, 596, 673, 708
PspPI	GGNCC	3 cut(s)	462, 491, 707
PspPPI	RGGWCCY	1 cut(s)	491
PsuI	RGATCY	1 cut(s)	554
PvuII	CAGCTG	1 cut(s)	32
RsaI	GTAC	4 cut(s)	295, 431, 596, 602
RsaNI	GTAC	4 cut(s)	294, 430, 595, 601
SaqAI	TTAA	1 cut(s)	348
SatI	GCNGC	6 cut(s)	33, 210, 312, 624, 813, 816
Sau3AI	GATC	1 cut(s)	554
Sau96I	GGNCC	3 cut(s)	462, 491, 707
ScrFI	CCNGG	1 cut(s)	495
SfaNI	GCATC	2 cut(s)	70, 413
SfcI	CTRYAG	1 cut(s)	771
Sfr274I	CTCGAG	1 cut(s)	219
SinI	GGWCC	3 cut(s)	462, 491, 707
SlaI	CTCGAG	1 cut(s)	219
SmlI	CTYRAG	1 cut(s)	219
SmoI	CTYRAG	1 cut(s)	219
SphI	GCATGC	1 cut(s)	541
Sse9I	AATT	3 cut(s)	264, 368, 387
SsiI	CCGC	5 cut(s)	18, 210, 312, 541, 815
SspMI	CTAG	3 cut(s)	15, 225, 636
StyD4I	CCNGG	1 cut(s)	493
TaaI	ACNGT	2 cut(s)	440, 515
TaiI	ACGT	1 cut(s)	705
TaqI	TCGA	4 cut(s)	93, 220, 585, 777
TasI	AATT	3 cut(s)	264, 368, 387
TatI	WGTACW	1 cut(s)	429
TauI	GCSGC	3 cut(s)	212, 314, 818
TfiI	GAWTC	2 cut(s)	26, 215
Tru1I	TTAA	1 cut(s)	348
Tru9I	TTAA	1 cut(s)	348
TscAI	CASTG	4 cut(s)	45, 61, 520, 682
TseI	GCWGC	3 cut(s)	32, 623, 812
TspDTI	ATGAA	3 cut(s)	17, 381, 498
TspGWI	ACGGA	1 cut(s)	653
TspRI	CASTG	4 cut(s)	45, 61, 520, 682
Van91I	CCANNNNNTGG	1 cut(s)	44
VpaK11BI	GGWCC	3 cut(s)	462, 491, 707
XapI	RAATTY	1 cut(s)	387
XceI	RCATGY	2 cut(s)	289, 541
XhoI	CTCGAG	1 cut(s)	219
XmnI	GAANNNNTTC	1 cut(s)	138
XspI	CTAG	3 cut(s)	15, 225, 636

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.