Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0000613

Physical Location & Seq

Genomic Coordinates Forward (+)

50026707 .. 50028220

Gene Structure 1514 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00429810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGTACTGTTATGTGCGTCGGAATGTAAGAGCATCTATATCCCAACTTTTGTTGGATGAATGCAAAAAGATTTACAACGAGGACCATACGTTTGGCACCATTATTGGTGGATACGACCCCGATAAGGGCTTTCAAGTTCGTAGTGTAACTCTTGTGGGCTATGATATTTTCGAAAGTGACCCTGATACAACAATTTTAACACTAGGGTCCGGTGAGGATGATGCGTACGAAATTTTGAACTCAGCAAACACATATTACGGTGAACACATATGCATGACTAGAGAACGTGCATACTACTTGGCTTTACATGCCTTATTTTATGCAACTTTCTGGGATAAGTATTCTGGTGGAACTCTAAATGTGATACATGTGTCTAAAACCACGTCTTCTCTCGAGACCCACAATGCTTTGCAAGTCTACCCCAAATTTTATAACCTTATGCCTAGAGATGCAAGTGATGTTCATAGCAGAACATTTTTCGTGCTTTATCCTACGAATTCCTATTCCAAACTTGTGTGGGAAGGTGATGGTCTTGAAGACCTCATCCTCAGAGTCTGGCCAAAGGGAGGTGTAGACTTACAGCAGCACCTAGAAGCAAGCCATTTTGTAGCAAAGAAGTACGATTTCTACTTTCACCGTTTCGTGTTCAAGCAAGTAAACAAGGCTATACAAGCATACAATACTATCACTACCATAGCTCTTCCCCAACGTCATAACGCTATAGAAGATTATTTCCAAGGCAATTTTAAACGTTCTGGCAGCCAAAAGAAGCCCGTTTATATTGGATGGAGCTCAGAAGACTTGTTGAAACGAATCTGTAACATGAAGGATGCTATTAATTCATGGTACTGCAAGTATTTGACCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005839 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0019538 GO:0019774 GO:0032991 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044464 GO:0071704 GO:1901564 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

Proteasome

Protein Analysis

289

Amino Acids

33.53

Weight (kDa)

6.79

Isoelectric Point (pI)

45.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000613)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13060 AT1G13060 AT1G13060 AT3G26340
fragaria_vesca	FvH4_1g01201 FvH4_4g24020 FvH4_6g30500
malus_domestica	MD10G1030600.v1.1 MD16G1116800.v1.1
prunus_persica	Prupe.1G229300_v2.0.a1 Prupe.1G229300_v2.0.a1 Prupe.1G229300_v2.0.a1
pyrus_communis	pycom10g01980 pycom13g10110
rosa_chinensis	RchiOBHm_Chr4g0430701 RchiOBHm_Chr5g0003071
rosa_laevigata	RLG00000006954 RLG00000031090 RLG00000031094 RLG00000031099 RLG00000031107 RLG00000031108 RLG00000031111 RLG00000031116 RLG00000032188
rosa_multiflora	Rmu_sc0000131.1_g000009 Rmu_sc0000146.1_g000015 Rmu_sc0002209.1_g000027
rosa_roxburghii	Rroxscaffold_1G00061170 Rroxscaffold_1G00061240 Rroxscaffold_1G00061300 Rroxscaffold_1G00072510 Rroxscaffold_1G00072750 Rroxscaffold_1G00072760 Rroxscaffold_5G00372440 Rroxscaffold_6G00429800 Rroxscaffold_6G00429810 Rroxscaffold_6G00429820 Rroxscaffold_6G00429850
rosa_rugosa	Rorug04G0245300 Rorug04G0402100 Rorug04G0402100 Rorug04G0402100 Rorug05G0025600 Rorug05G0026200
rosa_samantha	Rh3BG233200 Rh3DG047000 Rh3DG047300 Rh3DG047400 Rh3DG047800 Rh4AG053100 Rh4AG227500 Rh4BG230300 Rh4BG309300 Rh4CG242400 Rh4DG160600 Rh4DG225800 Rh5AG024300 Rh5AG024400 Rh5AG024700 Rh5AG027100 Rh5AG119900 Rh5BG118400 Rh5CG027100 Rh5CG027300 Rh5CG027700 Rh5CG128900 Rh5DG026900 Rh5DG027000 Rh5DG027700 Rh5DG028000 Rh5DG028500
rosa_wichuraiana	Rw0G010900 Rw3G003590 Rw4G026180 Rw5G002310 Rw5G002480 Rw5G002600 Rw5G010340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	432
AccB1I	GGYRCC	1 cut(s)	95
AccI	GTMKAC	2 cut(s)	417, 573
AclI	AACGTT	1 cut(s)	751
AcoI	YGGCCR	1 cut(s)	557
AcsI	RAATTY	3 cut(s)	231, 425, 496
AfaI	GTAC	4 cut(s)	5, 227, 620, 848
AfiI	CCNNNNNNNGG	3 cut(s)	124, 125, 566
AflIII	ACRYGT	1 cut(s)	367
AgsI	TTSAA	5 cut(s)	134, 238, 536, 649, 808
AjiI	CACGTC	1 cut(s)	384
AluBI	AGCT	2 cut(s)	698, 792
AluI	AGCT	2 cut(s)	698, 792
Alw21I	GWGCWC	1 cut(s)	794
Alw26I	GTCTC	1 cut(s)	389
AlwNI	CAGNNNCTG	1 cut(s)	555
Ama87I	CYCGRG	1 cut(s)	392
AoxI	GGCC	1 cut(s)	557
ApeKI	GCWGC	2 cut(s)	583, 759
ApoI	RAATTY	3 cut(s)	231, 425, 496
ArsI	GACNNNNNNTTYG	2 cut(s)	74, 106
AseI	ATTAAT	1 cut(s)	837
AspS9I	GGNCC	2 cut(s)	82, 207
AsuHPI	GGTGA	4 cut(s)	224, 272, 536, 626
AsuII	TTCGAA	1 cut(s)	171
AvaI	CYCGRG	1 cut(s)	392
AvaII	GGWCC	2 cut(s)	82, 207
BaeI	ACNNNNGTAYC	2 cut(s)	356, 389
BalI	TGGCCA	1 cut(s)	559
BanI	GGYRCC	1 cut(s)	95
BanII	GRGCYC	1 cut(s)	794
BarI	GAAGNNNNNNTAC	1 cut(s)	848
BbsI	GAAGAC	3 cut(s)	378, 543, 804
Bbv12I	GWGCWC	1 cut(s)	794
BbvI	GCAGC	2 cut(s)	595, 771
BccI	CCATC	2 cut(s)	521, 780
BciVI	GTATCC	1 cut(s)	104
BcoDI	GTCTC	1 cut(s)	389
BfaI	CTAG	4 cut(s)	203, 279, 444, 590
BfmI	CTRYAG	1 cut(s)	720
BfuI	GTATCC	1 cut(s)	104
BisI	GCNGC	2 cut(s)	584, 760
BlsI	GCNGC	2 cut(s)	585, 761
Bme18I	GGWCC	2 cut(s)	82, 207
BmeT110I	CYCGRG	1 cut(s)	392
BmgBI	CACGTC	1 cut(s)	384
BmgT120I	GGNCC	2 cut(s)	82, 207
BmiI	GGNNCC	2 cut(s)	97, 208
BmsI	GCATC	4 cut(s)	41, 211, 439, 820
BpiI	GAAGAC	3 cut(s)	378, 543, 804
Bpu14I	TTCGAA	1 cut(s)	171
BsaI	GGTCTC	1 cut(s)	389
BsaJI	CCNNGG	1 cut(s)	736
BsaWI	WCCGGW	1 cut(s)	209
Bsc4I	CCNNNNNNNGG	3 cut(s)	124, 125, 566
BseDI	CCNNGG	1 cut(s)	736
BseGI	GGATG	5 cut(s)	61, 223, 543, 791, 835
BseLI	CCNNNNNNNGG	3 cut(s)	124, 125, 566
BseMII	CTCAG	3 cut(s)	255, 562, 807
BseXI	GCAGC	2 cut(s)	595, 771
BshFI	GGCC	1 cut(s)	559
BshNI	GGYRCC	1 cut(s)	95
BsiHKAI	GWGCWC	1 cut(s)	794
BsiHKCI	CYCGRG	1 cut(s)	392
BsiSI	CCGG	1 cut(s)	210
BsiWI	CGTACG	1 cut(s)	225
BslI	CCNNNNNNNGG	3 cut(s)	124, 125, 566
BsmAI	GTCTC	1 cut(s)	389
BsmI	GAATGC	1 cut(s)	65
BsnI	GGCC	1 cut(s)	559
Bso31I	GGTCTC	1 cut(s)	389
BsoBI	CYCGRG	1 cut(s)	392
Bsp119I	TTCGAA	1 cut(s)	171
Bsp1286I	GDGCHC	1 cut(s)	794
BspANI	GGCC	1 cut(s)	559
BspCNI	CTCAG	3 cut(s)	254, 561, 806
BspLI	GGNNCC	2 cut(s)	97, 208
BspQI	GCTCTTC	1 cut(s)	705
BspT104I	TTCGAA	1 cut(s)	171
BspT107I	GGYRCC	1 cut(s)	95
BspTNI	GGTCTC	1 cut(s)	389
BssECI	CCNNGG	1 cut(s)	736
BssT1I	CCWWGG	1 cut(s)	736
Bst4CI	ACNGT	3 cut(s)	8, 260, 638
Bst6I	CTCTTC	1 cut(s)	705
BstBI	TTCGAA	1 cut(s)	171
BstC8I	GCNNGC	1 cut(s)	598
BstDEI	CTNAG	3 cut(s)	241, 548, 793
BstF5I	GGATG	5 cut(s)	61, 223, 543, 791, 835
BstMAI	GTCTC	1 cut(s)	389
BstMWI	GCNNNNNNNGC	2 cut(s)	308, 671
BstNSI	RCATGY	2 cut(s)	311, 371
BstSFI	CTRYAG	1 cut(s)	720
BstV1I	GCAGC	2 cut(s)	595, 771
BstV2I	GAAGAC	3 cut(s)	378, 543, 804
BstXI	CCANNNNNNTGG	1 cut(s)	92
BsuI	GTATCC	1 cut(s)	104
BsuRI	GGCC	1 cut(s)	559
BtrI	CACGTC	1 cut(s)	384
BtsCI	GGATG	5 cut(s)	61, 223, 543, 791, 835
Cac8I	GCNNGC	1 cut(s)	598
CaiI	CAGNNNCTG	1 cut(s)	555
Cfr13I	GGNCC	2 cut(s)	82, 207
CseI	GACGC	1 cut(s)	5
Csp6I	GTAC	4 cut(s)	4, 226, 619, 847
CviAII	CATG	5 cut(s)	274, 308, 368, 823, 843
CviQI	GTAC	4 cut(s)	4, 226, 619, 847
DdeI	CTNAG	3 cut(s)	241, 548, 793
DraI	TTTAAA	1 cut(s)	748
EaeI	YGGCCR	1 cut(s)	557
Eam1104I	CTCTTC	1 cut(s)	705
EarI	CTCTTC	1 cut(s)	705
Ecl136II	GAGCTC	1 cut(s)	792
Eco130I	CCWWGG	1 cut(s)	736
Eco24I	GRGCYC	1 cut(s)	794
Eco31I	GGTCTC	1 cut(s)	389
Eco47I	GGWCC	2 cut(s)	82, 207
Eco53kI	GAGCTC	1 cut(s)	792
Eco88I	CYCGRG	1 cut(s)	392
EcoICRI	GAGCTC	1 cut(s)	792
EcoRI	GAATTC	1 cut(s)	496
EcoT14I	CCWWGG	1 cut(s)	736
EcoT22I	ATGCAT	1 cut(s)	275
EcoT38I	GRGCYC	1 cut(s)	794
ErhI	CCWWGG	1 cut(s)	736
FaeI	CATG	5 cut(s)	277, 311, 371, 826, 846
FatI	CATG	5 cut(s)	273, 307, 367, 822, 842
FauNDI	CATATG	1 cut(s)	269
FblI	GTMKAC	2 cut(s)	417, 573
Fnu4HI	GCNGC	2 cut(s)	584, 760
FokI	GGATG	5 cut(s)	68, 230, 530, 798, 842
FriOI	GRGCYC	1 cut(s)	794
Fsp4HI	GCNGC	2 cut(s)	584, 760
FspBI	CTAG	4 cut(s)	203, 279, 444, 590
GluI	GCNGC	2 cut(s)	584, 760
HaeIII	GGCC	1 cut(s)	559
HapII	CCGG	1 cut(s)	210
HgaI	GACGC	1 cut(s)	5
Hin1II	CATG	5 cut(s)	277, 311, 371, 826, 846
HinfI	GANTC	2 cut(s)	552, 813
HpaII	CCGG	1 cut(s)	210
HphI	GGTGA	4 cut(s)	224, 272, 536, 626
Hpy166II	GTNNAC	4 cut(s)	263, 418, 574, 658
Hpy188I	TCNGA	3 cut(s)	21, 551, 796
Hpy188III	TCNNGA	3 cut(s)	392, 394, 533
Hpy8I	GTNNAC	4 cut(s)	263, 418, 574, 658
Hpy99I	CGWCG	1 cut(s)	21
HpyAV	CCTTC	2 cut(s)	515, 820
HpyCH4III	ACNGT	3 cut(s)	8, 260, 638
HpyCH4IV	ACGT	5 cut(s)	89, 286, 383, 709, 751
HpyCH4V	TGCA	7 cut(s)	63, 273, 290, 323, 412, 452, 852
HpyF10VI	GCNNNNNNNGC	2 cut(s)	308, 671
HpyF3I	CTNAG	3 cut(s)	241, 548, 793
HpySE526I	ACGT	5 cut(s)	89, 286, 383, 709, 751
Hsp92II	CATG	5 cut(s)	277, 311, 371, 826, 846
LguI	GCTCTTC	1 cut(s)	705
LmnI	GCTCC	1 cut(s)	789
LpnPI	CCDG	6 cut(s)	195, 223, 316, 330, 541, 741
Lsp1109I	GCAGC	2 cut(s)	595, 771
LweI	GCATC	4 cut(s)	41, 211, 439, 820
MaeI	CTAG	4 cut(s)	203, 279, 444, 590
MaeII	ACGT	5 cut(s)	89, 286, 383, 709, 751
MaeIII	GTNAC	3 cut(s)	145, 176, 818
MboII	GAAGA	5 cut(s)	378, 548, 692, 737, 809
MhlI	GDGCHC	1 cut(s)	794
MlsI	TGGCCA	1 cut(s)	559
MluCI	AATT	6 cut(s)	192, 231, 425, 496, 742, 838
MluNI	TGGCCA	1 cut(s)	559
MlyI	GAGTC	1 cut(s)	561
MmeI	TCCRAC	1 cut(s)	33
MnlI	CCTC	5 cut(s)	73, 208, 551, 557, 560
Mox20I	TGGCCA	1 cut(s)	559
Mph1103I	ATGCAT	1 cut(s)	275
MscI	TGGCCA	1 cut(s)	559
MseI	TTAA	3 cut(s)	197, 747, 837
MslI	CAYNNNNRTG	1 cut(s)	272
Msp20I	TGGCCA	1 cut(s)	559
MspI	CCGG	1 cut(s)	210
Mva1269I	GAATGC	1 cut(s)	65
MwoI	GCNNNNNNNGC	2 cut(s)	308, 671
NdeI	CATATG	1 cut(s)	269
NlaIII	CATG	5 cut(s)	277, 311, 371, 826, 846
NlaIV	GGNNCC	2 cut(s)	97, 208
NmuCI	GTSAC	1 cut(s)	176
NsiI	ATGCAT	1 cut(s)	275
NspI	RCATGY	2 cut(s)	311, 371
NspV	TTCGAA	1 cut(s)	171
PaeR7I	CTCGAG	1 cut(s)	392
PciI	ACATGT	1 cut(s)	367
PciSI	GCTCTTC	1 cut(s)	705
PctI	GAATGC	1 cut(s)	65
PfeI	GAWTC	1 cut(s)	813
Pfl23II	CGTACG	1 cut(s)	225
PkrI	GCNGC	2 cut(s)	585, 761
PleI	GAGTC	1 cut(s)	560
PpsI	GAGTC	1 cut(s)	560
PscI	ACATGT	1 cut(s)	367
PshBI	ATTAAT	1 cut(s)	837
PsiI	TTATAA	1 cut(s)	432
Psp124BI	GAGCTC	1 cut(s)	794
Psp1406I	AACGTT	1 cut(s)	751
PspLI	CGTACG	1 cut(s)	225
PspN4I	GGNNCC	2 cut(s)	97, 208
PspPI	GGNCC	2 cut(s)	82, 207
PstNI	CAGNNNCTG	1 cut(s)	555
RsaI	GTAC	4 cut(s)	5, 227, 620, 848
RsaNI	GTAC	4 cut(s)	4, 226, 619, 847
RseI	CAYNNNNRTG	1 cut(s)	272
SacI	GAGCTC	1 cut(s)	794
SapI	GCTCTTC	1 cut(s)	705
SaqAI	TTAA	3 cut(s)	197, 747, 837
SatI	GCNGC	2 cut(s)	584, 760
Sau96I	GGNCC	2 cut(s)	82, 207
SchI	GAGTC	1 cut(s)	561
SduI	GDGCHC	1 cut(s)	794
SfaNI	GCATC	4 cut(s)	41, 211, 439, 820
SfcI	CTRYAG	1 cut(s)	720
Sfr274I	CTCGAG	1 cut(s)	392
SfuI	TTCGAA	1 cut(s)	171
SinI	GGWCC	2 cut(s)	82, 207
SlaI	CTCGAG	1 cut(s)	392
SmiMI	CAYNNNNRTG	1 cut(s)	272
SmlI	CTYRAG	1 cut(s)	392
SmoI	CTYRAG	1 cut(s)	392
Sse9I	AATT	6 cut(s)	192, 231, 425, 496, 742, 838
SspMI	CTAG	4 cut(s)	203, 279, 444, 590
SstI	GAGCTC	1 cut(s)	794
StyI	CCWWGG	1 cut(s)	736
TaaI	ACNGT	3 cut(s)	8, 260, 638
TaiI	ACGT	5 cut(s)	92, 289, 386, 712, 754
TaqI	TCGA	2 cut(s)	171, 393
TasI	AATT	6 cut(s)	192, 231, 425, 496, 742, 838
TatI	WGTACW	1 cut(s)	3
TfiI	GAWTC	1 cut(s)	813
Tru1I	TTAA	3 cut(s)	197, 747, 837
Tru9I	TTAA	3 cut(s)	197, 747, 837
TseFI	GTSAC	1 cut(s)	176
TseI	GCWGC	2 cut(s)	583, 759
Tsp45I	GTSAC	1 cut(s)	176
TspDTI	ATGAA	4 cut(s)	72, 452, 831, 839
VpaK11BI	GGWCC	2 cut(s)	82, 207
VspI	ATTAAT	1 cut(s)	837
XapI	RAATTY	3 cut(s)	231, 425, 496
XceI	RCATGY	2 cut(s)	311, 371
XhoI	CTCGAG	1 cut(s)	392
XmiI	GTMKAC	2 cut(s)	417, 573
XspI	CTAG	4 cut(s)	203, 279, 444, 590
Zsp2I	ATGCAT	1 cut(s)	275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.