RLG00000031108

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000613
Physical Location & Seq
Reverse (-)
2164523 .. 2166165
1643 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031108

Sequence Viewer

Length: 996 bp
ATGGGTTGTGGAGCTTCAAAATACTCTTCGGACCAGAAACTCAAGGGGACGACAATTATTGGTTTTGTTTTCCGTGACGGCATCATGGTTGGAGCTGAATCTAGGGCTTCTAATGAATATGAAAAGCTTCTACATCGGCTTAGAATTATAGACAACAGAAACAAAATGGCCGAAATATCTTCCAACATAATTTACGATGAATATCGTGGCAATACACCTAGAGTTTCATGTGTAGTAGAAACGATGTATGAGTATCTGAATAGTCTGGATAACAAGGATATAGTATGTGGAGCCATCATCGTTGGATGGGATGCTATTTCGGGTCCTGAATTTCATCGCGTTTTTATAAAAAACAAAAAGGTTGTGAAACAAGGAGGTTCTATGCCTTTAGCGCTAGGAGGTGGTCAAGGTCATGCTCTTCGTATGCTTCAAAGTATCGACTACAATATGTCCACTGATGATGCTGCTGATTTGGCGTTTAAAACTTTATTTAATGCAACCTACTATGATAAGCATAGTGGTGGAGAACTGAAAGTTTATCACATTAATGAATCTGGATGGAAGCAGCTCCCTGTCATGAATGCTTTGGAAGCTTACACAATATATTACGACCTTCACAGTCGCTTTGAACGGAAAACGCTTTTCTTGGTTGTGGATGCCGGGATCGAACCTATTTCCGCAAACGACCTTATAGAACACTTCAAGCCACATGCAAATTTACTGGCATCCCATCGTGTAGCCCTCTGTAAATTTGGAGGTGATTGCTTCTACTTCCACCGCCTTGTGTTCGAGTTTGAAGATGATGCAAAAAGGGCATATGAAACTACAACTCCTCACGGTCGAACTACTCCCTCGTACCTAGAACGGTTTCCAGATCAAGTGGTCTTGGATAATAAGAATCCAAGTGTTACAGTTTATGTGAATTGGAGCTCAAGGGGTTTGCTGGAATTTTTACACGATGAATGTCAGTTATTATATAAGACGGTTGATAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005839 GO:0019774 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1905368 GO:1905369
KEGG Pathways
Metabolic & Signaling
ko03050 map03050
Pfam Domains
Protein Families
Proteasome

Protein Analysis

332

Amino Acids

37.53

Weight (kDa)

6.18

Isoelectric Point (pI)

35.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 347
AccII CGCG 1 cut(s) 339
AciI CCGC 2 cut(s) 678, 778
AclWI GGATC 1 cut(s) 671
AcoI YGGCCR 1 cut(s) 168
AcsI RAATTY 4 cut(s) 329, 715, 749, 947
AfaI GTAC 1 cut(s) 857
AfeI AGCGCT 1 cut(s) 393
AgsI TTSAA 5 cut(s) 18, 431, 629, 703, 797
AluBI AGCT 6 cut(s) 14, 95, 127, 568, 593, 930
AluI AGCT 6 cut(s) 14, 95, 127, 568, 593, 930
Alw21I GWGCWC 1 cut(s) 932
AlwI GGATC 1 cut(s) 671
Aor51HI AGCGCT 1 cut(s) 393
AoxI GGCC 1 cut(s) 168
ApeKI GCWGC 2 cut(s) 464, 565
ApoI RAATTY 4 cut(s) 329, 715, 749, 947
AseI ATTAAT 1 cut(s) 546
Asp700I GAANNNNTTC 2 cut(s) 126, 867
AspLEI GCGC 1 cut(s) 394
AspS9I GGNCC 2 cut(s) 31, 323
AsuC2I CCSGG 1 cut(s) 661
AsuHPI GGTGA 1 cut(s) 770
AvaII GGWCC 2 cut(s) 31, 323
BanII GRGCYC 1 cut(s) 932
Bbv12I GWGCWC 1 cut(s) 932
BbvI GCAGC 2 cut(s) 451, 577
BccI CCATC 4 cut(s) 300, 302, 552, 738
BceAI ACGGC 1 cut(s) 94
BcnI CCSGG 1 cut(s) 661
BfaI CTAG 4 cut(s) 102, 219, 395, 860
BfoI RGCGCY 1 cut(s) 395
BisI GCNGC 2 cut(s) 465, 566
BlsI GCNGC 2 cut(s) 466, 567
Bme1390I CCNGG 1 cut(s) 661
Bme18I GGWCC 2 cut(s) 31, 323
BmgT120I GGNCC 2 cut(s) 31, 323
BmiI GGNNCC 2 cut(s) 292, 324
BmrFI CCNGG 1 cut(s) 661
BmsI GCATC 6 cut(s) 90, 301, 451, 646, 734, 793
BpuEI CTTGAG 2 cut(s) 26, 916
BpuMI CCSGG 1 cut(s) 661
BsaBI GATNNNNATC 1 cut(s) 201
BsaXI ACNNNNNCTCC 2 cut(s) 814, 844
Bse1I ACTGG 1 cut(s) 726
Bse8I GATNNNNATC 1 cut(s) 201
BseGI GGATG 5 cut(s) 311, 316, 563, 661, 725
BseJI GATNNNNATC 1 cut(s) 201
BseNI ACTGG 1 cut(s) 726
BseRI GAGGAG 1 cut(s) 822
BseXI GCAGC 2 cut(s) 451, 577
Bsh1236I CGCG 1 cut(s) 339
Bsh1285I CGRYCG 1 cut(s) 841
BshFI GGCC 1 cut(s) 170
BsiEI CGRYCG 1 cut(s) 841
BsiHKAI GWGCWC 1 cut(s) 932
BsiSI CCGG 1 cut(s) 660
BslFI GGGAC 1 cut(s) 61
BsmFI GGGAC 1 cut(s) 61
BsmI GAATGC 1 cut(s) 586
BsnI GGCC 1 cut(s) 170
Bsp1286I GDGCHC 1 cut(s) 932
Bsp143I GATC 2 cut(s) 663, 874
BspACI CCGC 2 cut(s) 678, 778
BspANI GGCC 1 cut(s) 170
BspFNI CGCG 1 cut(s) 339
BspHI TCATGA 1 cut(s) 576
BspLI GGNNCC 2 cut(s) 292, 324
BspPI GGATC 1 cut(s) 671
BspQI GCTCTTC 1 cut(s) 423
BsrI ACTGG 1 cut(s) 726
BssMI GATC 2 cut(s) 663, 874
Bst4CI ACNGT 5 cut(s) 620, 839, 867, 913, 985
Bst6I CTCTTC 2 cut(s) 31, 423
BstDEI CTNAG 1 cut(s) 140
BstF5I GGATG 5 cut(s) 311, 316, 563, 661, 725
BstFNI CGCG 1 cut(s) 339
BstH2I RGCGCY 1 cut(s) 395
BstHHI GCGC 1 cut(s) 394
BstKTI GATC 2 cut(s) 666, 877
BstMBI GATC 2 cut(s) 663, 874
BstMCI CGRYCG 1 cut(s) 841
BstMWI GCNNNNNNNGC 4 cut(s) 391, 473, 590, 812
BstNSI RCATGY 1 cut(s) 713
BstSCI CCNGG 1 cut(s) 659
BstUI CGCG 1 cut(s) 339
BstV1I GCAGC 2 cut(s) 451, 577
BsuRI GGCC 1 cut(s) 170
BtgZI GCGATG 1 cut(s) 320
BtsCI GGATG 5 cut(s) 311, 316, 563, 661, 725
BtsIMutI CAGTG 1 cut(s) 453
CciI TCATGA 1 cut(s) 576
CfoI GCGC 1 cut(s) 394
Cfr13I GGNCC 2 cut(s) 31, 323
Csp6I GTAC 1 cut(s) 856
CviAII CATG 5 cut(s) 85, 228, 413, 577, 710
CviQI GTAC 1 cut(s) 856
DdeI CTNAG 1 cut(s) 140
DpnI GATC 2 cut(s) 665, 876
DpnII GATC 2 cut(s) 663, 874
DraI TTTAAA 1 cut(s) 481
EaeI YGGCCR 1 cut(s) 168
Eam1104I CTCTTC 2 cut(s) 31, 423
EarI CTCTTC 2 cut(s) 31, 423
Ecl136II GAGCTC 1 cut(s) 930
Eco24I GRGCYC 1 cut(s) 932
Eco47I GGWCC 2 cut(s) 31, 323
Eco47III AGCGCT 1 cut(s) 393
Eco53kI GAGCTC 1 cut(s) 930
EcoICRI GAGCTC 1 cut(s) 930
EcoO109I RGGNCCY 1 cut(s) 323
EcoT38I GRGCYC 1 cut(s) 932
FaeI CATG 5 cut(s) 88, 231, 416, 580, 713
FaqI GGGAC 1 cut(s) 61
FatI CATG 5 cut(s) 84, 227, 412, 576, 709
FauNDI CATATG 1 cut(s) 817
Fnu4HI GCNGC 2 cut(s) 465, 566
FokI GGATG 5 cut(s) 318, 323, 570, 668, 712
FriOI GRGCYC 1 cut(s) 932
Fsp4HI GCNGC 2 cut(s) 465, 566
FspBI CTAG 4 cut(s) 102, 219, 395, 860
GlaI GCGC 1 cut(s) 393
GluI GCNGC 2 cut(s) 465, 566
HaeII RGCGCY 1 cut(s) 395
HaeIII GGCC 1 cut(s) 170
HapII CCGG 1 cut(s) 660
HhaI GCGC 1 cut(s) 394
Hin1II CATG 5 cut(s) 88, 231, 416, 580, 713
Hin6I GCGC 1 cut(s) 392
HinP1I GCGC 1 cut(s) 392
HindIII AAGCTT 2 cut(s) 125, 591
HinfI GANTC 3 cut(s) 98, 551, 898
HpaII CCGG 1 cut(s) 660
HphI GGTGA 1 cut(s) 770
Hpy166II GTNNAC 1 cut(s) 453
Hpy188I TCNGA 2 cut(s) 31, 258
Hpy188III TCNNGA 5 cut(s) 266, 326, 555, 577, 872
Hpy8I GTNNAC 1 cut(s) 453
HpyAV CCTTC 1 cut(s) 623
HpyCH4III ACNGT 5 cut(s) 620, 839, 867, 913, 985
HpyCH4V TGCA 3 cut(s) 497, 713, 806
HpyF10VI GCNNNNNNNGC 4 cut(s) 391, 473, 590, 812
HpyF3I CTNAG 1 cut(s) 140
Hsp92II CATG 5 cut(s) 88, 231, 416, 580, 713
HspAI GCGC 1 cut(s) 392
Kzo9I GATC 2 cut(s) 663, 874
LguI GCTCTTC 1 cut(s) 423
LmnI GCTCC 5 cut(s) 11, 92, 290, 573, 927
LpnPI CCDG 9 cut(s) 47, 251, 339, 540, 585, 673, 707, 885, 929
Lsp1109I GCAGC 2 cut(s) 451, 577
LweI GCATC 6 cut(s) 90, 301, 451, 646, 734, 793
MaeI CTAG 4 cut(s) 102, 219, 395, 860
MaeIII GTNAC 2 cut(s) 74, 907
MalI GATC 2 cut(s) 665, 876
MboI GATC 2 cut(s) 663, 874
MboII GAAGA 4 cut(s) 18, 171, 410, 809
MhlI GDGCHC 1 cut(s) 932
MluCI AATT 8 cut(s) 54, 144, 189, 329, 715, 749, 922, 947
MmeI TCCRAC 3 cut(s) 70, 207, 283
MnlI CCTC 6 cut(s) 368, 392, 749, 752, 843, 862
MroXI GAANNNNTTC 2 cut(s) 126, 867
MseI TTAA 4 cut(s) 480, 492, 546, 994
MslI CAYNNNNRTG 2 cut(s) 519, 546
MspI CCGG 1 cut(s) 660
MspR9I CCNGG 1 cut(s) 661
Mva1269I GAATGC 1 cut(s) 586
MvnI CGCG 1 cut(s) 339
MwoI GCNNNNNNNGC 4 cut(s) 391, 473, 590, 812
NciI CCSGG 1 cut(s) 661
NdeI CATATG 1 cut(s) 817
NdeII GATC 2 cut(s) 663, 874
NlaIII CATG 5 cut(s) 88, 231, 416, 580, 713
NlaIV GGNNCC 2 cut(s) 292, 324
NmuCI GTSAC 1 cut(s) 74
NspI RCATGY 1 cut(s) 713
PagI TCATGA 1 cut(s) 576
PciSI GCTCTTC 1 cut(s) 423
PctI GAATGC 1 cut(s) 586
PdmI GAANNNNTTC 2 cut(s) 126, 867
PfeI GAWTC 3 cut(s) 98, 551, 898
PkrI GCNGC 2 cut(s) 466, 567
PpuMI RGGWCCY 1 cut(s) 323
PshBI ATTAAT 1 cut(s) 546
PsiI TTATAA 1 cut(s) 347
Psp124BI GAGCTC 1 cut(s) 932
Psp5II RGGWCCY 1 cut(s) 323
PspN4I GGNNCC 2 cut(s) 292, 324
PspPI GGNCC 2 cut(s) 31, 323
PspPPI RGGWCCY 1 cut(s) 323
RsaI GTAC 1 cut(s) 857
RsaNI GTAC 1 cut(s) 856
RseI CAYNNNNRTG 2 cut(s) 519, 546
SacI GAGCTC 1 cut(s) 932
SapI GCTCTTC 1 cut(s) 423
SaqAI TTAA 4 cut(s) 480, 492, 546, 994
SatI GCNGC 2 cut(s) 465, 566
Sau3AI GATC 2 cut(s) 663, 874
Sau96I GGNCC 2 cut(s) 31, 323
ScrFI CCNGG 1 cut(s) 661
SduI GDGCHC 1 cut(s) 932
SfaNI GCATC 6 cut(s) 90, 301, 451, 646, 734, 793
SinI GGWCC 2 cut(s) 31, 323
SmiMI CAYNNNNRTG 2 cut(s) 519, 546
SmlI CTYRAG 2 cut(s) 41, 931
SmoI CTYRAG 2 cut(s) 41, 931
Sse9I AATT 8 cut(s) 54, 144, 189, 329, 715, 749, 922, 947
SsiI CCGC 2 cut(s) 678, 778
SspMI CTAG 4 cut(s) 102, 219, 395, 860
SstI GAGCTC 1 cut(s) 932
StyD4I CCNGG 1 cut(s) 659
TaaI ACNGT 5 cut(s) 620, 839, 867, 913, 985
TaqI TCGA 4 cut(s) 438, 666, 789, 841
TasI AATT 8 cut(s) 54, 144, 189, 329, 715, 749, 922, 947
TfiI GAWTC 3 cut(s) 98, 551, 898
Tru1I TTAA 4 cut(s) 480, 492, 546, 994
Tru9I TTAA 4 cut(s) 480, 492, 546, 994
TscAI CASTG 1 cut(s) 460
TseFI GTSAC 1 cut(s) 74
TseI GCWGC 2 cut(s) 464, 565
Tsp45I GTSAC 1 cut(s) 74
TspDTI ATGAA 9 cut(s) 129, 135, 213, 216, 323, 564, 593, 834, 975
TspGWI ACGGA 2 cut(s) 62, 646
TspRI CASTG 1 cut(s) 460
VpaK11BI GGWCC 2 cut(s) 31, 323
VspI ATTAAT 1 cut(s) 546
XapI RAATTY 4 cut(s) 329, 715, 749, 947
XceI RCATGY 1 cut(s) 713
XmnI GAANNNNTTC 2 cut(s) 126, 867
XspI CTAG 4 cut(s) 102, 219, 395, 860
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.