The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Rx_N | PF18052 | 2 - 51 | 2.2e-08 | Rx N-terminal domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 37 |
| AciI | CCGC | 2 cut(s) | 35, 59 |
| AgsI | TTSAA | 3 cut(s) | 8, 86, 149 |
| AluBI | AGCT | 6 cut(s) | 11, 67, 82, 95, 139, 157 |
| AluI | AGCT | 6 cut(s) | 11, 67, 82, 95, 139, 157 |
| Alw21I | GWGCWC | 1 cut(s) | 141 |
| ApeKI | GCWGC | 2 cut(s) | 64, 157 |
| AsuHPI | GGTGA | 2 cut(s) | 65, 85 |
| BanII | GRGCYC | 1 cut(s) | 141 |
| BarI | GAAGNNNNNNTAC | 1 cut(s) | 32 |
| BbsI | GAAGAC | 1 cut(s) | 93 |
| Bbv12I | GWGCWC | 1 cut(s) | 141 |
| BbvI | GCAGC | 2 cut(s) | 76, 144 |
| BccI | CCATC | 1 cut(s) | 39 |
| BisI | GCNGC | 2 cut(s) | 65, 158 |
| BlsI | GCNGC | 2 cut(s) | 66, 159 |
| BmsI | GCATC | 1 cut(s) | 91 |
| BpiI | GAAGAC | 1 cut(s) | 93 |
| BsaAI | YACGTR | 1 cut(s) | 20 |
| BseGI | GGATG | 2 cut(s) | 31, 124 |
| BseXI | GCAGC | 2 cut(s) | 76, 144 |
| BsgI | GTGCAG | 2 cut(s) | 83, 145 |
| Bsh1236I | CGCG | 1 cut(s) | 37 |
| BsiHKAI | GWGCWC | 1 cut(s) | 141 |
| Bsp1286I | GDGCHC | 1 cut(s) | 141 |
| BspACI | CCGC | 2 cut(s) | 35, 59 |
| BspFNI | CGCG | 1 cut(s) | 37 |
| BspQI | GCTCTTC | 1 cut(s) | 129 |
| Bst6I | CTCTTC | 1 cut(s) | 129 |
| BstBAI | YACGTR | 1 cut(s) | 20 |
| BstDEI | CTNAG | 1 cut(s) | 201 |
| BstF5I | GGATG | 2 cut(s) | 31, 124 |
| BstFNI | CGCG | 1 cut(s) | 37 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 101 |
| BstUI | CGCG | 1 cut(s) | 37 |
| BstV1I | GCAGC | 2 cut(s) | 76, 144 |
| BstV2I | GAAGAC | 1 cut(s) | 93 |
| BtsCI | GGATG | 2 cut(s) | 31, 124 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 31, 66 |
| CviJI | RGCY | 6 cut(s) | 11, 67, 82, 95, 139, 157 |
| CviKI_1 | RGCY | 6 cut(s) | 11, 67, 82, 95, 139, 157 |
| DdeI | CTNAG | 1 cut(s) | 201 |
| Eam1104I | CTCTTC | 1 cut(s) | 129 |
| EarI | CTCTTC | 1 cut(s) | 129 |
| Ecl136II | GAGCTC | 1 cut(s) | 139 |
| Eco24I | GRGCYC | 1 cut(s) | 141 |
| Eco53kI | GAGCTC | 1 cut(s) | 139 |
| EcoICRI | GAGCTC | 1 cut(s) | 139 |
| EcoT38I | GRGCYC | 1 cut(s) | 141 |
| FaiI | YATR | 2 cut(s) | 92, 132 |
| Fnu4HI | GCNGC | 2 cut(s) | 65, 158 |
| FokI | GGATG | 2 cut(s) | 18, 131 |
| FriOI | GRGCYC | 1 cut(s) | 141 |
| Fsp4HI | GCNGC | 2 cut(s) | 65, 158 |
| GluI | GCNGC | 2 cut(s) | 65, 158 |
| HindIII | AAGCTT | 2 cut(s) | 9, 80 |
| HinfI | GANTC | 1 cut(s) | 168 |
| HphI | GGTGA | 2 cut(s) | 65, 85 |
| Hpy188I | TCNGA | 1 cut(s) | 143 |
| HpyCH4IV | ACGT | 1 cut(s) | 19 |
| HpyCH4V | TGCA | 2 cut(s) | 64, 126 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 101 |
| HpyF3I | CTNAG | 1 cut(s) | 201 |
| HpySE526I | ACGT | 1 cut(s) | 19 |
| LguI | GCTCTTC | 1 cut(s) | 129 |
| LmnI | GCTCC | 1 cut(s) | 144 |
| LpnPI | CCDG | 1 cut(s) | 32 |
| Lsp1109I | GCAGC | 2 cut(s) | 76, 144 |
| LweI | GCATC | 1 cut(s) | 91 |
| MaeII | ACGT | 1 cut(s) | 19 |
| MaeIII | GTNAC | 1 cut(s) | 73 |
| MboII | GAAGA | 2 cut(s) | 98, 146 |
| MhlI | GDGCHC | 1 cut(s) | 141 |
| MluCI | AATT | 1 cut(s) | 184 |
| MmeI | TCCRAC | 1 cut(s) | 166 |
| MnlI | CCTC | 1 cut(s) | 49 |
| MspA1I | CMGCKG | 1 cut(s) | 67 |
| MvnI | CGCG | 1 cut(s) | 37 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 101 |
| NmuCI | GTSAC | 1 cut(s) | 73 |
| PciSI | GCTCTTC | 1 cut(s) | 129 |
| PfeI | GAWTC | 1 cut(s) | 168 |
| PkrI | GCNGC | 2 cut(s) | 66, 159 |
| Ppu21I | YACGTR | 1 cut(s) | 20 |
| Psp124BI | GAGCTC | 1 cut(s) | 141 |
| PvuII | CAGCTG | 1 cut(s) | 67 |
| SacI | GAGCTC | 1 cut(s) | 141 |
| SapI | GCTCTTC | 1 cut(s) | 129 |
| SatI | GCNGC | 2 cut(s) | 65, 158 |
| SduI | GDGCHC | 1 cut(s) | 141 |
| SetI | ASST | 7 cut(s) | 13, 22, 69, 84, 97, 141, 159 |
| SfaNI | GCATC | 1 cut(s) | 91 |
| SgeI | CNNG | 7 cut(s) | 17, 32, 48, 59, 95, 161, 177 |
| Sse9I | AATT | 1 cut(s) | 184 |
| SsiI | CCGC | 2 cut(s) | 35, 59 |
| SstI | GAGCTC | 1 cut(s) | 141 |
| TaiI | ACGT | 1 cut(s) | 22 |
| TasI | AATT | 1 cut(s) | 184 |
| TfiI | GAWTC | 1 cut(s) | 168 |
| TseFI | GTSAC | 1 cut(s) | 73 |
| TseI | GCWGC | 2 cut(s) | 64, 157 |
| Tsp45I | GTSAC | 1 cut(s) | 73 |
| TspDTI | ATGAA | 1 cut(s) | 147 |