Rh5DG027700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000613
Physical Location & Seq
Reverse (-)
1983576 .. 1990317
6742 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG027700.1

Sequence Viewer

Length: 606 bp
ATGGGTTGTGGAGCTTCAAAATACTCTTCGGACCAGAAACTCAAGGGGACGACAATTATTGGTTTTGTTTACCGTGACGGTATCATGGTTGGAGCTGAATCTAGGGCTTCTAATGAATATGAAAAGCTTCTACATCCGCTTAGAATTTATCACATTAATGAATCTGGATGGAAGCAGCTCCCTGTCATGAATGCTTTGGAAGCTTACACAAGATATTACGACCTTCACAGTCGCTTTGAACGGAAAACGCTTTTCTTGGTTGTGGATGCCGGGATCCAACCTATTTCCGCAAACGACCTTATAGAACACTTCAAGCCACGTGCAAATTTACTCGCATCCCATCGTGTAGCCCTCTGTAAATTTGGAGGTGATTGCTTCTACTTCCACCGCCTTGTGTTCGAGTTTGAAGATGATGCAAAAAGGGCATATGAAACTACAACTCCTCATGGTCGAACTACTCCCTCGTACCTAGAACGGTTTCCAGATCAATTGGTCTTGGATTATAAGAATCCAAGTGTTACAGTTTATGTGAATTGGAGCTCAAGGGGTTTGCTGGAATTTTTACACGATGAATGTCAGTTATTATATAAGATGGTTGATAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

201

Amino Acids

23.23

Weight (kDa)

6.7

Isoelectric Point (pI)

27.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 504
AciI CCGC 3 cut(s) 137, 288, 388
AclWI GGATC 2 cut(s) 268, 281
AcsI RAATTY 4 cut(s) 144, 325, 359, 557
AcvI CACGTG 1 cut(s) 320
AfaI GTAC 1 cut(s) 467
AgsI TTSAA 4 cut(s) 18, 239, 313, 407
AluBI AGCT 6 cut(s) 14, 95, 127, 178, 203, 540
AluI AGCT 6 cut(s) 14, 95, 127, 178, 203, 540
Alw21I GWGCWC 1 cut(s) 542
AlwI GGATC 2 cut(s) 268, 281
ApeKI GCWGC 1 cut(s) 175
ApoI RAATTY 4 cut(s) 144, 325, 359, 557
AseI ATTAAT 1 cut(s) 156
Asp700I GAANNNNTTC 2 cut(s) 126, 477
AspS9I GGNCC 1 cut(s) 31
AsuC2I CCSGG 1 cut(s) 271
AsuHPI GGTGA 1 cut(s) 380
AvaII GGWCC 1 cut(s) 31
BamHI GGATCC 1 cut(s) 273
BanII GRGCYC 1 cut(s) 542
BbrPI CACGTG 1 cut(s) 320
Bbv12I GWGCWC 1 cut(s) 542
BbvI GCAGC 1 cut(s) 187
BccI CCATC 3 cut(s) 162, 348, 586
BcnI CCSGG 1 cut(s) 271
BfaI CTAG 2 cut(s) 102, 470
BisI GCNGC 1 cut(s) 176
BlsI GCNGC 1 cut(s) 177
Bme1390I CCNGG 1 cut(s) 271
Bme18I GGWCC 1 cut(s) 31
BmgT120I GGNCC 1 cut(s) 31
BmiI GGNNCC 1 cut(s) 275
BmrFI CCNGG 1 cut(s) 271
BmsI GCATC 3 cut(s) 256, 344, 403
BpuEI CTTGAG 2 cut(s) 26, 526
BpuMI CCSGG 1 cut(s) 271
BsaAI YACGTR 1 cut(s) 320
BsaXI ACNNNNNCTCC 2 cut(s) 424, 454
BseGI GGATG 4 cut(s) 133, 173, 271, 335
BseRI GAGGAG 1 cut(s) 432
BseXI GCAGC 1 cut(s) 187
BsiHKAI GWGCWC 1 cut(s) 542
BsiSI CCGG 1 cut(s) 270
BslFI GGGAC 1 cut(s) 61
BsmFI GGGAC 1 cut(s) 61
BsmI GAATGC 1 cut(s) 196
Bsp1286I GDGCHC 1 cut(s) 542
Bsp143I GATC 2 cut(s) 273, 484
BspACI CCGC 3 cut(s) 137, 288, 388
BspHI TCATGA 1 cut(s) 186
BspLI GGNNCC 1 cut(s) 275
BspPI GGATC 2 cut(s) 268, 281
BssMI GATC 2 cut(s) 273, 484
Bst4CI ACNGT 5 cut(s) 74, 80, 230, 477, 523
Bst6I CTCTTC 1 cut(s) 31
BstBAI YACGTR 1 cut(s) 320
BstDEI CTNAG 1 cut(s) 140
BstF5I GGATG 4 cut(s) 133, 173, 271, 335
BstKTI GATC 2 cut(s) 276, 487
BstMBI GATC 2 cut(s) 273, 484
BstMWI GCNNNNNNNGC 2 cut(s) 200, 422
BstSCI CCNGG 1 cut(s) 269
BstV1I GCAGC 1 cut(s) 187
BstX2I RGATCY 1 cut(s) 273
BstYI RGATCY 1 cut(s) 273
BtsCI GGATG 4 cut(s) 133, 173, 271, 335
CciI TCATGA 1 cut(s) 186
Cfr13I GGNCC 1 cut(s) 31
Csp6I GTAC 1 cut(s) 466
CviAII CATG 3 cut(s) 85, 187, 446
CviJI RGCY 9 cut(s) 14, 95, 107, 127, 178, 203, 316, 350, 540
CviKI_1 RGCY 9 cut(s) 14, 95, 107, 127, 178, 203, 316, 350, 540
CviQI GTAC 1 cut(s) 466
DdeI CTNAG 1 cut(s) 140
DpnI GATC 2 cut(s) 275, 486
DpnII GATC 2 cut(s) 273, 484
Eam1104I CTCTTC 1 cut(s) 31
EarI CTCTTC 1 cut(s) 31
Ecl136II GAGCTC 1 cut(s) 540
Eco24I GRGCYC 1 cut(s) 542
Eco47I GGWCC 1 cut(s) 31
Eco53kI GAGCTC 1 cut(s) 540
Eco72I CACGTG 1 cut(s) 320
EcoICRI GAGCTC 1 cut(s) 540
EcoT38I GRGCYC 1 cut(s) 542
FaeI CATG 3 cut(s) 88, 190, 449
FaqI GGGAC 1 cut(s) 61
FatI CATG 3 cut(s) 84, 186, 445
FauNDI CATATG 1 cut(s) 427
Fnu4HI GCNGC 1 cut(s) 176
FokI GGATG 4 cut(s) 120, 180, 278, 322
FriOI GRGCYC 1 cut(s) 542
Fsp4HI GCNGC 1 cut(s) 176
FspBI CTAG 2 cut(s) 102, 470
GluI GCNGC 1 cut(s) 176
HapII CCGG 1 cut(s) 270
Hin1II CATG 3 cut(s) 88, 190, 449
HindIII AAGCTT 2 cut(s) 125, 201
HinfI GANTC 3 cut(s) 98, 161, 508
HpaII CCGG 1 cut(s) 270
HphI GGTGA 1 cut(s) 380
Hpy166II GTNNAC 1 cut(s) 70
Hpy188I TCNGA 1 cut(s) 31
Hpy188III TCNNGA 3 cut(s) 165, 187, 482
Hpy8I GTNNAC 1 cut(s) 70
HpyAV CCTTC 1 cut(s) 233
HpyCH4III ACNGT 5 cut(s) 74, 80, 230, 477, 523
HpyCH4IV ACGT 1 cut(s) 319
HpyCH4V TGCA 2 cut(s) 323, 416
HpyF10VI GCNNNNNNNGC 2 cut(s) 200, 422
HpyF3I CTNAG 1 cut(s) 140
HpySE526I ACGT 1 cut(s) 319
Hsp92II CATG 3 cut(s) 88, 190, 449
Kzo9I GATC 2 cut(s) 273, 484
LmnI GCTCC 4 cut(s) 11, 92, 183, 537
LpnPI CCDG 6 cut(s) 47, 150, 195, 283, 495, 539
Lsp1109I GCAGC 1 cut(s) 187
LweI GCATC 3 cut(s) 256, 344, 403
MaeI CTAG 2 cut(s) 102, 470
MaeII ACGT 1 cut(s) 319
MaeIII GTNAC 2 cut(s) 74, 517
MalI GATC 2 cut(s) 275, 486
MboI GATC 2 cut(s) 273, 484
MboII GAAGA 2 cut(s) 18, 419
MfeI CAATTG 1 cut(s) 488
MflI RGATCY 1 cut(s) 273
MhlI GDGCHC 1 cut(s) 542
MluCI AATT 7 cut(s) 54, 144, 325, 359, 488, 532, 557
MmeI TCCRAC 2 cut(s) 70, 301
MnlI CCTC 4 cut(s) 359, 362, 453, 472
MroXI GAANNNNTTC 2 cut(s) 126, 477
MseI TTAA 2 cut(s) 156, 604
MslI CAYNNNNRTG 1 cut(s) 156
MspI CCGG 1 cut(s) 270
MspR9I CCNGG 1 cut(s) 271
MunI CAATTG 1 cut(s) 488
Mva1269I GAATGC 1 cut(s) 196
MwoI GCNNNNNNNGC 2 cut(s) 200, 422
NciI CCSGG 1 cut(s) 271
NdeI CATATG 1 cut(s) 427
NdeII GATC 2 cut(s) 273, 484
NlaIII CATG 3 cut(s) 88, 190, 449
NlaIV GGNNCC 1 cut(s) 275
NmuCI GTSAC 1 cut(s) 74
PagI TCATGA 1 cut(s) 186
PctI GAATGC 1 cut(s) 196
PdmI GAANNNNTTC 2 cut(s) 126, 477
PfeI GAWTC 3 cut(s) 98, 161, 508
PkrI GCNGC 1 cut(s) 177
PmaCI CACGTG 1 cut(s) 320
PmlI CACGTG 1 cut(s) 320
Ppu21I YACGTR 1 cut(s) 320
PshBI ATTAAT 1 cut(s) 156
PsiI TTATAA 1 cut(s) 504
Psp124BI GAGCTC 1 cut(s) 542
PspCI CACGTG 1 cut(s) 320
PspN4I GGNNCC 1 cut(s) 275
PspPI GGNCC 1 cut(s) 31
PsuI RGATCY 1 cut(s) 273
RsaI GTAC 1 cut(s) 467
RsaNI GTAC 1 cut(s) 466
RseI CAYNNNNRTG 1 cut(s) 156
SacI GAGCTC 1 cut(s) 542
SaqAI TTAA 2 cut(s) 156, 604
SatI GCNGC 1 cut(s) 176
Sau3AI GATC 2 cut(s) 273, 484
Sau96I GGNCC 1 cut(s) 31
ScrFI CCNGG 1 cut(s) 271
SduI GDGCHC 1 cut(s) 542
SfaNI GCATC 3 cut(s) 256, 344, 403
SinI GGWCC 1 cut(s) 31
SmiMI CAYNNNNRTG 1 cut(s) 156
SmlI CTYRAG 2 cut(s) 41, 541
SmoI CTYRAG 2 cut(s) 41, 541
Sse9I AATT 7 cut(s) 54, 144, 325, 359, 488, 532, 557
SsiI CCGC 3 cut(s) 137, 288, 388
SspMI CTAG 2 cut(s) 102, 470
SstI GAGCTC 1 cut(s) 542
StyD4I CCNGG 1 cut(s) 269
TaaI ACNGT 5 cut(s) 74, 80, 230, 477, 523
TaiI ACGT 1 cut(s) 322
TaqI TCGA 2 cut(s) 399, 451
TasI AATT 7 cut(s) 54, 144, 325, 359, 488, 532, 557
TfiI GAWTC 3 cut(s) 98, 161, 508
Tru1I TTAA 2 cut(s) 156, 604
Tru9I TTAA 2 cut(s) 156, 604
TseFI GTSAC 1 cut(s) 74
TseI GCWGC 1 cut(s) 175
Tsp45I GTSAC 1 cut(s) 74
TspDTI ATGAA 6 cut(s) 129, 135, 174, 203, 444, 585
TspGWI ACGGA 1 cut(s) 256
VpaK11BI GGWCC 1 cut(s) 31
VspI ATTAAT 1 cut(s) 156
XapI RAATTY 4 cut(s) 144, 325, 359, 557
XmnI GAANNNNTTC 2 cut(s) 126, 477
XspI CTAG 2 cut(s) 102, 470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.