Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000613

Physical Location & Seq

Genomic Coordinates Reverse (-)

1931963 .. 1934404

Gene Structure 2442 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG027000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGATGGGAGCACTGGTTTTCGGTTCATCGTTAGGCACGCTTGGGCGGGGCTGTTTCCAATCGGCGGTGGCAGTGCAGCAGCGTCTGCTCGTTTGGCCGCGTCAAGGCCACATGCAAAGTTATTGGCATCCCATCGTGTAGCCCTCTGTAAATTGGGAGGTGATCGCCTCTACTTCCACCGCCTTGTGTTCGAGTCTGACGATGATGCAGAAAGGGCATATGAAACTACAACTCCTCATGGTCGAACTACTCCCCCGTACCTAGAACGGTTTCCAGATCAAGTGATCTTGGCTAATAAGAATCCAAGTGTTACTGTTTATGTGAATTGGAGCTCAAGGGATTTGCTGGAATTTGTACACGATGAATGTCAGTTATTATATAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

128

Amino Acids

14.35

Weight (kDa)

7.87

Isoelectric Point (pI)

23.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000613)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13060 AT1G13060 AT1G13060 AT3G26340
fragaria_vesca	FvH4_1g01201 FvH4_4g24020 FvH4_6g30500
malus_domestica	MD10G1030600.v1.1 MD16G1116800.v1.1
prunus_persica	Prupe.1G229300_v2.0.a1 Prupe.1G229300_v2.0.a1 Prupe.1G229300_v2.0.a1
pyrus_communis	pycom10g01980 pycom13g10110
rosa_chinensis	RchiOBHm_Chr4g0430701 RchiOBHm_Chr5g0003071
rosa_laevigata	RLG00000006954 RLG00000031090 RLG00000031094 RLG00000031099 RLG00000031107 RLG00000031108 RLG00000031111 RLG00000031116 RLG00000032188
rosa_multiflora	Rmu_sc0000131.1_g000009 Rmu_sc0000146.1_g000015 Rmu_sc0002209.1_g000027
rosa_roxburghii	Rroxscaffold_1G00061170 Rroxscaffold_1G00061240 Rroxscaffold_1G00061300 Rroxscaffold_1G00072510 Rroxscaffold_1G00072750 Rroxscaffold_1G00072760 Rroxscaffold_5G00372440 Rroxscaffold_6G00429800 Rroxscaffold_6G00429810 Rroxscaffold_6G00429820 Rroxscaffold_6G00429850
rosa_rugosa	Rorug04G0245300 Rorug04G0402100 Rorug04G0402100 Rorug04G0402100 Rorug05G0025600 Rorug05G0026200
rosa_samantha	Rh3BG233200 Rh3DG047000 Rh3DG047300 Rh3DG047400 Rh3DG047800 Rh4AG053100 Rh4AG227500 Rh4BG230300 Rh4BG309300 Rh4CG242400 Rh4DG160600 Rh4DG225800 Rh5AG024300 Rh5AG024400 Rh5AG024700 Rh5AG027100 Rh5AG119900 Rh5BG118400 Rh5CG027100 Rh5CG027300 Rh5CG027700 Rh5CG128900 Rh5DG026900 Rh5DG027000 Rh5DG027700 Rh5DG028000 Rh5DG028500
rosa_wichuraiana	Rw0G010900 Rw3G003590 Rw4G026180 Rw5G002310 Rw5G002480 Rw5G002600 Rw5G010340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	101
AciI	CCGC	4 cut(s)	47, 66, 99, 181
AcoI	YGGCCR	1 cut(s)	96
AcsI	RAATTY	1 cut(s)	350
AfaI	GTAC	2 cut(s)	260, 357
AfiI	CCNNNNNNNGG	2 cut(s)	65, 105
AluBI	AGCT	1 cut(s)	333
AluI	AGCT	1 cut(s)	333
Alw21I	GWGCWC	2 cut(s)	14, 335
AlwNI	CAGNNNCTG	1 cut(s)	86
AoxI	GGCC	2 cut(s)	96, 107
ApeKI	GCWGC	2 cut(s)	77, 80
ApoI	RAATTY	1 cut(s)	350
Asp700I	GAANNNNTTC	1 cut(s)	270
AsuHPI	GGTGA	1 cut(s)	173
BanII	GRGCYC	1 cut(s)	335
Bbv12I	GWGCWC	2 cut(s)	14, 335
BbvI	GCAGC	2 cut(s)	89, 92
BccI	CCATC	1 cut(s)	141
BfaI	CTAG	1 cut(s)	263
BisI	GCNGC	3 cut(s)	78, 81, 99
BlsI	GCNGC	3 cut(s)	79, 82, 100
BmsI	GCATC	2 cut(s)	137, 196
BpuEI	CTTGAG	1 cut(s)	319
BsaXI	ACNNNNNCTCC	3 cut(s)	31, 217, 247
Bsc4I	CCNNNNNNNGG	2 cut(s)	65, 105
Bse1I	ACTGG	1 cut(s)	19
BseGI	GGATG	2 cut(s)	10, 128
BseLI	CCNNNNNNNGG	2 cut(s)	65, 105
BseNI	ACTGG	1 cut(s)	19
BseRI	GAGGAG	1 cut(s)	225
BseXI	GCAGC	2 cut(s)	89, 92
BsgI	GTGCAG	1 cut(s)	96
Bsh1236I	CGCG	1 cut(s)	101
BshFI	GGCC	2 cut(s)	98, 109
BsiHKAI	GWGCWC	2 cut(s)	14, 335
BslI	CCNNNNNNNGG	2 cut(s)	65, 105
BsnI	GGCC	2 cut(s)	98, 109
Bsp1286I	GDGCHC	2 cut(s)	14, 335
Bsp1407I	TGTACA	1 cut(s)	355
Bsp143I	GATC	3 cut(s)	163, 277, 285
BspACI	CCGC	4 cut(s)	47, 66, 99, 181
BspANI	GGCC	2 cut(s)	98, 109
BspFNI	CGCG	1 cut(s)	101
BsrGI	TGTACA	1 cut(s)	355
BsrI	ACTGG	1 cut(s)	19
BssMI	GATC	3 cut(s)	163, 277, 285
Bst4CI	ACNGT	2 cut(s)	270, 316
BstAPI	GCANNNNNTGC	1 cut(s)	86
BstAUI	TGTACA	1 cut(s)	355
BstC8I	GCNNGC	1 cut(s)	39
BstF5I	GGATG	2 cut(s)	10, 128
BstFNI	CGCG	1 cut(s)	101
BstKTI	GATC	3 cut(s)	166, 280, 288
BstMBI	GATC	3 cut(s)	163, 277, 285
BstMWI	GCNNNNNNNGC	3 cut(s)	86, 95, 215
BstNSI	RCATGY	1 cut(s)	116
BstUI	CGCG	1 cut(s)	101
BstV1I	GCAGC	2 cut(s)	89, 92
BsuRI	GGCC	2 cut(s)	98, 109
BtsCI	GGATG	2 cut(s)	10, 128
BtsI	GCAGTG	1 cut(s)	79
BtsIMutI	CAGTG	2 cut(s)	12, 79
Cac8I	GCNNGC	1 cut(s)	39
CaiI	CAGNNNCTG	1 cut(s)	86
CseI	GACGC	2 cut(s)	72, 90
Csp6I	GTAC	2 cut(s)	259, 356
CviAII	CATG	2 cut(s)	113, 239
CviJI	RGCY	6 cut(s)	52, 98, 109, 143, 293, 333
CviKI_1	RGCY	6 cut(s)	52, 98, 109, 143, 293, 333
CviQI	GTAC	2 cut(s)	259, 356
DpnI	GATC	3 cut(s)	165, 279, 287
DpnII	GATC	3 cut(s)	163, 277, 285
EaeI	YGGCCR	1 cut(s)	96
Ecl136II	GAGCTC	1 cut(s)	333
Eco24I	GRGCYC	1 cut(s)	335
Eco53kI	GAGCTC	1 cut(s)	333
EcoICRI	GAGCTC	1 cut(s)	333
EcoT38I	GRGCYC	1 cut(s)	335
FaeI	CATG	2 cut(s)	116, 242
FaiI	YATR	7 cut(s)	114, 220, 222, 240, 321, 379, 381
FatI	CATG	2 cut(s)	112, 238
FauI	CCCGC	1 cut(s)	40
FauNDI	CATATG	1 cut(s)	220
Fnu4HI	GCNGC	3 cut(s)	78, 81, 99
FokI	GGATG	2 cut(s)	17, 115
FriOI	GRGCYC	1 cut(s)	335
Fsp4HI	GCNGC	3 cut(s)	78, 81, 99
FspBI	CTAG	1 cut(s)	263
GluI	GCNGC	3 cut(s)	78, 81, 99
HaeIII	GGCC	2 cut(s)	98, 109
HgaI	GACGC	2 cut(s)	72, 90
Hin1II	CATG	2 cut(s)	116, 242
HinfI	GANTC	2 cut(s)	194, 301
HphI	GGTGA	1 cut(s)	173
Hpy166II	GTNNAC	1 cut(s)	358
Hpy188I	TCNGA	1 cut(s)	199
Hpy188III	TCNNGA	1 cut(s)	275
Hpy8I	GTNNAC	1 cut(s)	358
HpyCH4III	ACNGT	2 cut(s)	270, 316
HpyCH4V	TGCA	3 cut(s)	77, 116, 209
HpyF10VI	GCNNNNNNNGC	3 cut(s)	86, 95, 215
Hsp92II	CATG	2 cut(s)	116, 242
Kzo9I	GATC	3 cut(s)	163, 277, 285
LmnI	GCTCC	2 cut(s)	9, 330
LpnPI	CCDG	2 cut(s)	288, 332
Lsp1109I	GCAGC	2 cut(s)	89, 92
LweI	GCATC	2 cut(s)	137, 196
MaeI	CTAG	1 cut(s)	263
MaeIII	GTNAC	1 cut(s)	310
MalI	GATC	3 cut(s)	165, 279, 287
MboI	GATC	3 cut(s)	163, 277, 285
MhlI	GDGCHC	2 cut(s)	14, 335
MluCI	AATT	3 cut(s)	152, 325, 350
MlyI	GAGTC	1 cut(s)	203
MnlI	CCTC	4 cut(s)	152, 155, 179, 246
MroXI	GAANNNNTTC	1 cut(s)	270
MvnI	CGCG	1 cut(s)	101
MwoI	GCNNNNNNNGC	3 cut(s)	86, 95, 215
NdeI	CATATG	1 cut(s)	220
NdeII	GATC	3 cut(s)	163, 277, 285
NlaIII	CATG	2 cut(s)	116, 242
NspI	RCATGY	1 cut(s)	116
PcsI	WCGNNNNNNNCGW	1 cut(s)	198
PdmI	GAANNNNTTC	1 cut(s)	270
PfeI	GAWTC	1 cut(s)	301
PkrI	GCNGC	3 cut(s)	79, 82, 100
PleI	GAGTC	1 cut(s)	202
PpsI	GAGTC	1 cut(s)	202
Psp124BI	GAGCTC	1 cut(s)	335
PstNI	CAGNNNCTG	1 cut(s)	86
RsaI	GTAC	2 cut(s)	260, 357
RsaNI	GTAC	2 cut(s)	259, 356
SacI	GAGCTC	1 cut(s)	335
SatI	GCNGC	3 cut(s)	78, 81, 99
Sau3AI	GATC	3 cut(s)	163, 277, 285
SchI	GAGTC	1 cut(s)	203
SduI	GDGCHC	2 cut(s)	14, 335
SetI	ASST	4 cut(s)	163, 264, 335, 386
SfaNI	GCATC	2 cut(s)	137, 196
SmlI	CTYRAG	1 cut(s)	334
SmoI	CTYRAG	1 cut(s)	334
Sse9I	AATT	3 cut(s)	152, 325, 350
SsiI	CCGC	4 cut(s)	47, 66, 99, 181
SspMI	CTAG	1 cut(s)	263
SstI	GAGCTC	1 cut(s)	335
TaaI	ACNGT	2 cut(s)	270, 316
TaqI	TCGA	2 cut(s)	192, 244
TasI	AATT	3 cut(s)	152, 325, 350
TatI	WGTACW	1 cut(s)	355
TauI	GCSGC	1 cut(s)	101
TfiI	GAWTC	1 cut(s)	301
TscAI	CASTG	2 cut(s)	19, 79
TseI	GCWGC	2 cut(s)	77, 80
TspDTI	ATGAA	3 cut(s)	16, 237, 378
TspRI	CASTG	2 cut(s)	19, 79
XapI	RAATTY	1 cut(s)	350
XceI	RCATGY	1 cut(s)	116
XmnI	GAANNNNTTC	1 cut(s)	270
XspI	CTAG	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.