Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0000613

Physical Location & Seq

Genomic Coordinates Reverse (-)

2185532 .. 2186559

Gene Structure 1028 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G002480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGGTTGTGGGGCTTCAAAATATTCTTCGGAAGGATCAGAAAGCAGGAAATTTGAGAATACGTCACTAGCTTTGGACCATAAACTCAAAGGGACGACACTTATTGGTTTTGTTTACCGTGAGGGCATCATAGTTGGAGCTGAATCTAGGGCTTCTAATGAATATGATCAGCTTCTATATCCGCTTACAATTCGAGACAACAGACCCAAAATGGCTCAAATATCTTCCCACATTATTTACGTAGTTCAAGGGGTAGAGGCTGATTGTACACAAATGAAGTTGCATATAAGTGAGAAGTTTCCGAACATAGATGAACATCTTGGCAATGCACCTACAGTTTCATCTGTAGTACAAACGGTGTATAAGTATCTGAACAGTCTCAATGACAAGGATAAAGGTCCTCAAGTTCATCGTGTTTTTCTGAAAAACAAAAAGGTTGTGAAAGAAAGAGCTTGTATGCCTGCAGCGCTAGGAAGTGGTCAAGTTCATGCTCTTCGTATCCTTAATAAAAGTTACAACTACAATATGTCCACTGCTGATGCTATTGATTTGGCACGTAAAGCTTTATTTAATGCAACCTACTATGACAAGCATAGTGGTGGAGAACTGAAAGGTACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0003674 GO:0003824 GO:0004175 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005789 GO:0005829 GO:0005839 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0010499 GO:0012505 GO:0016020 GO:0016043 GO:0016787 GO:0019538 GO:0019774 GO:0019941 GO:0022607 GO:0030163 GO:0031597 GO:0031984 GO:0032991 GO:0034515 GO:0034622 GO:0042175 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043248 GO:0043632 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0051603 GO:0065003 GO:0070011 GO:0071704 GO:0071840 GO:0080129 GO:0098827 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

Proteasome

Protein Analysis

206

Amino Acids

22.85

Weight (kDa)

9.11

Isoelectric Point (pI)

38.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Proteasome	PF00227	30 - 124	3.9e-07	Proteasome subunit
Proteasome	PF00227	154 - 203	1.9e-06	Proteasome subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000613)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13060 AT1G13060 AT1G13060 AT3G26340
fragaria_vesca	FvH4_1g01201 FvH4_4g24020 FvH4_6g30500
malus_domestica	MD10G1030600.v1.1 MD16G1116800.v1.1
prunus_persica	Prupe.1G229300_v2.0.a1 Prupe.1G229300_v2.0.a1 Prupe.1G229300_v2.0.a1
pyrus_communis	pycom10g01980 pycom13g10110
rosa_chinensis	RchiOBHm_Chr4g0430701 RchiOBHm_Chr5g0003071
rosa_laevigata	RLG00000006954 RLG00000031090 RLG00000031094 RLG00000031099 RLG00000031107 RLG00000031108 RLG00000031111 RLG00000031116 RLG00000032188
rosa_multiflora	Rmu_sc0000131.1_g000009 Rmu_sc0000146.1_g000015 Rmu_sc0002209.1_g000027
rosa_roxburghii	Rroxscaffold_1G00061170 Rroxscaffold_1G00061240 Rroxscaffold_1G00061300 Rroxscaffold_1G00072510 Rroxscaffold_1G00072750 Rroxscaffold_1G00072760 Rroxscaffold_5G00372440 Rroxscaffold_6G00429800 Rroxscaffold_6G00429810 Rroxscaffold_6G00429820 Rroxscaffold_6G00429850
rosa_rugosa	Rorug04G0245300 Rorug04G0402100 Rorug04G0402100 Rorug04G0402100 Rorug05G0025600 Rorug05G0026200
rosa_samantha	Rh3BG233200 Rh3DG047000 Rh3DG047300 Rh3DG047400 Rh3DG047800 Rh4AG053100 Rh4AG227500 Rh4BG230300 Rh4BG309300 Rh4CG242400 Rh4DG160600 Rh4DG225800 Rh5AG024300 Rh5AG024400 Rh5AG024700 Rh5AG027100 Rh5AG119900 Rh5BG118400 Rh5CG027100 Rh5CG027300 Rh5CG027700 Rh5CG128900 Rh5DG026900 Rh5DG027000 Rh5DG027700 Rh5DG028000 Rh5DG028500
rosa_wichuraiana	Rw0G010900 Rw3G003590 Rw4G026180 Rw5G002310 Rw5G002480 Rw5G002600 Rw5G010340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	182
AclWI	GGATC	1 cut(s)	43
AcsI	RAATTY	1 cut(s)	50
AfaI	GTAC	3 cut(s)	268, 351, 616
AfeI	AGCGCT	1 cut(s)	468
AgsI	TTSAA	2 cut(s)	18, 248
AluBI	AGCT	5 cut(s)	71, 140, 172, 452, 563
AluI	AGCT	5 cut(s)	71, 140, 172, 452, 563
Alw26I	GTCTC	2 cut(s)	189, 383
AlwI	GGATC	1 cut(s)	43
Aor51HI	AGCGCT	1 cut(s)	468
ApeKI	GCWGC	1 cut(s)	464
ApoI	RAATTY	1 cut(s)	50
AspLEI	GCGC	1 cut(s)	469
AspS9I	GGNCC	2 cut(s)	76, 398
AvaII	GGWCC	2 cut(s)	76, 398
BbvI	GCAGC	1 cut(s)	476
BciVI	GTATCC	1 cut(s)	509
BclI	TGATCA	1 cut(s)	166
BcoDI	GTCTC	2 cut(s)	189, 383
BfaI	CTAG	3 cut(s)	68, 147, 470
BfmI	CTRYAG	3 cut(s)	333, 345, 462
BfoI	RGCGCY	1 cut(s)	470
BfuI	GTATCC	1 cut(s)	509
BisI	GCNGC	1 cut(s)	465
BlsI	GCNGC	1 cut(s)	466
Bme18I	GGWCC	2 cut(s)	76, 398
BmgT120I	GGNCC	2 cut(s)	76, 398
BmsI	GCATC	2 cut(s)	135, 529
BpuEI	CTTGAG	1 cut(s)	387
BsaAI	YACGTR	3 cut(s)	241, 557, 618
BsaBI	GATNNNNATC	1 cut(s)	315
Bse3DI	GCAATG	1 cut(s)	331
Bse8I	GATNNNNATC	1 cut(s)	315
BseJI	GATNNNNATC	1 cut(s)	315
BseMI	GCAATG	1 cut(s)	331
BseXI	GCAGC	1 cut(s)	476
BslFI	GGGAC	1 cut(s)	106
BsmAI	GTCTC	2 cut(s)	189, 383
BsmFI	GGGAC	1 cut(s)	106
Bsp1407I	TGTACA	1 cut(s)	266
Bsp143I	GATC	2 cut(s)	35, 166
BspACI	CCGC	1 cut(s)	182
BspMAI	CTGCAG	1 cut(s)	466
BspPI	GGATC	1 cut(s)	43
BspQI	GCTCTTC	1 cut(s)	498
BsrDI	GCAATG	1 cut(s)	331
BsrGI	TGTACA	1 cut(s)	266
BssMI	GATC	2 cut(s)	35, 166
Bst4CI	ACNGT	4 cut(s)	119, 337, 358, 377
Bst6I	CTCTTC	1 cut(s)	498
BstAUI	TGTACA	1 cut(s)	266
BstBAI	YACGTR	3 cut(s)	241, 557, 618
BstC8I	GCNNGC	1 cut(s)	462
BstH2I	RGCGCY	1 cut(s)	470
BstHHI	GCGC	1 cut(s)	469
BstKTI	GATC	2 cut(s)	38, 169
BstMAI	GTCTC	2 cut(s)	189, 383
BstMBI	GATC	2 cut(s)	35, 166
BstMWI	GCNNNNNNNGC	2 cut(s)	466, 560
BstSFI	CTRYAG	3 cut(s)	333, 345, 462
BstSNI	TACGTA	2 cut(s)	241, 618
BstV1I	GCAGC	1 cut(s)	476
BsuI	GTATCC	1 cut(s)	509
BtsI	GCAGTG	1 cut(s)	531
BtsIMutI	CAGTG	1 cut(s)	531
Cac8I	GCNNGC	1 cut(s)	462
CfoI	GCGC	1 cut(s)	469
Cfr13I	GGNCC	2 cut(s)	76, 398
Csp6I	GTAC	3 cut(s)	267, 350, 615
CspCI	CAANNNNNGTGG	2 cut(s)	577, 612
CviAII	CATG	1 cut(s)	488
CviJI	RGCY	9 cut(s)	14, 71, 140, 152, 172, 215, 260, 452, 563
CviKI_1	RGCY	9 cut(s)	14, 71, 140, 152, 172, 215, 260, 452, 563
CviQI	GTAC	3 cut(s)	267, 350, 615
DpnI	GATC	2 cut(s)	37, 168
DpnII	GATC	2 cut(s)	35, 166
Eam1104I	CTCTTC	1 cut(s)	498
EarI	CTCTTC	1 cut(s)	498
Eco105I	TACGTA	2 cut(s)	241, 618
Eco47I	GGWCC	2 cut(s)	76, 398
Eco47III	AGCGCT	1 cut(s)	468
EcoO109I	RGGNCCY	1 cut(s)	398
FaeI	CATG	1 cut(s)	491
FaqI	GGGAC	1 cut(s)	106
FatI	CATG	1 cut(s)	487
FbaI	TGATCA	1 cut(s)	166
Fnu4HI	GCNGC	1 cut(s)	465
Fsp4HI	GCNGC	1 cut(s)	465
FspBI	CTAG	3 cut(s)	68, 147, 470
GlaI	GCGC	1 cut(s)	468
GluI	GCNGC	1 cut(s)	465
HaeII	RGCGCY	1 cut(s)	470
HhaI	GCGC	1 cut(s)	469
Hin1II	CATG	1 cut(s)	491
Hin6I	GCGC	1 cut(s)	467
HinP1I	GCGC	1 cut(s)	467
HindIII	AAGCTT	1 cut(s)	561
HinfI	GANTC	1 cut(s)	143
Hpy166II	GTNNAC	3 cut(s)	115, 269, 531
Hpy188I	TCNGA	5 cut(s)	31, 40, 303, 372, 423
Hpy188III	TCNNGA	1 cut(s)	194
Hpy8I	GTNNAC	3 cut(s)	115, 269, 531
HpyAV	CCTTC	1 cut(s)	26
HpyCH4III	ACNGT	4 cut(s)	119, 337, 358, 377
HpyCH4IV	ACGT	4 cut(s)	62, 240, 556, 617
HpyCH4V	TGCA	4 cut(s)	283, 329, 464, 575
HpyF10VI	GCNNNNNNNGC	2 cut(s)	466, 560
HpySE526I	ACGT	4 cut(s)	62, 240, 556, 617
Hsp92II	CATG	1 cut(s)	491
HspAI	GCGC	1 cut(s)	467
Ksp22I	TGATCA	1 cut(s)	166
Kzo9I	GATC	2 cut(s)	35, 166
LguI	GCTCTTC	1 cut(s)	498
LmnI	GCTCC	1 cut(s)	137
LpnPI	CCDG	2 cut(s)	31, 474
Lsp1109I	GCAGC	1 cut(s)	476
LweI	GCATC	2 cut(s)	135, 529
MaeI	CTAG	3 cut(s)	68, 147, 470
MaeII	ACGT	4 cut(s)	62, 240, 556, 617
MaeIII	GTNAC	2 cut(s)	63, 512
MalI	GATC	2 cut(s)	37, 168
MboI	GATC	2 cut(s)	35, 166
MboII	GAAGA	3 cut(s)	18, 216, 485
MluCI	AATT	2 cut(s)	50, 189
MmeI	TCCRAC	1 cut(s)	115
MnlI	CCTC	3 cut(s)	115, 250, 411
MseI	TTAA	2 cut(s)	504, 570
MslI	CAYNNNNRTG	2 cut(s)	288, 597
MwoI	GCNNNNNNNGC	2 cut(s)	466, 560
NdeII	GATC	2 cut(s)	35, 166
NlaIII	CATG	1 cut(s)	491
NmuCI	GTSAC	1 cut(s)	63
PciSI	GCTCTTC	1 cut(s)	498
PfeI	GAWTC	1 cut(s)	143
PkrI	GCNGC	1 cut(s)	466
Ppu21I	YACGTR	3 cut(s)	241, 557, 618
PpuMI	RGGWCCY	1 cut(s)	398
Psp5II	RGGWCCY	1 cut(s)	398
PspPI	GGNCC	2 cut(s)	76, 398
PspPPI	RGGWCCY	1 cut(s)	398
PstI	CTGCAG	1 cut(s)	466
RsaI	GTAC	3 cut(s)	268, 351, 616
RsaNI	GTAC	3 cut(s)	267, 350, 615
RseI	CAYNNNNRTG	2 cut(s)	288, 597
SapI	GCTCTTC	1 cut(s)	498
SaqAI	TTAA	2 cut(s)	504, 570
SatI	GCNGC	1 cut(s)	465
Sau3AI	GATC	2 cut(s)	35, 166
Sau96I	GGNCC	2 cut(s)	76, 398
SfaNI	GCATC	2 cut(s)	135, 529
SfcI	CTRYAG	3 cut(s)	333, 345, 462
SinI	GGWCC	2 cut(s)	76, 398
SmiMI	CAYNNNNRTG	2 cut(s)	288, 597
SmlI	CTYRAG	1 cut(s)	402
SmoI	CTYRAG	1 cut(s)	402
SnaBI	TACGTA	2 cut(s)	241, 618
Sse9I	AATT	2 cut(s)	50, 189
SsiI	CCGC	1 cut(s)	182
SspI	AATATT	1 cut(s)	23
SspMI	CTAG	3 cut(s)	68, 147, 470
TaaI	ACNGT	4 cut(s)	119, 337, 358, 377
TaiI	ACGT	4 cut(s)	65, 243, 559, 620
TaqI	TCGA	1 cut(s)	193
TasI	AATT	2 cut(s)	50, 189
TatI	WGTACW	2 cut(s)	266, 349
TfiI	GAWTC	1 cut(s)	143
Tru1I	TTAA	2 cut(s)	504, 570
Tru9I	TTAA	2 cut(s)	504, 570
TscAI	CASTG	1 cut(s)	538
TseFI	GTSAC	1 cut(s)	63
TseI	GCWGC	1 cut(s)	464
Tsp45I	GTSAC	1 cut(s)	63
TspDTI	ATGAA	6 cut(s)	174, 290, 327, 330, 398, 476
TspRI	CASTG	1 cut(s)	538
VpaK11BI	GGWCC	2 cut(s)	76, 398
XapI	RAATTY	1 cut(s)	50
XspI	CTAG	3 cut(s)	68, 147, 470

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.