Rw5G002310

threonine-type endopeptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000613
Physical Location & Seq
Forward (+)
1955215 .. 1956152
938 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G002310.1

Sequence Viewer

Length: 534 bp
ATGATTGGTTTTGTTTACCGTGACGGCATCATGGTTGGAGCTGAATCTAGGGCTTCTAATGAATATGAAAAGCTTCTACATCCGCTTAGAATTATAGACAACAGAACCAAAATGGCCGAAATATCTTCCAACATAATTTACGTATATCAAGGGGTAGAGGCTCATTGTACACAATTGAACTTGTATATAAGTAGTAAGTTTGCGGACATGGATGAATATTGTGGCAATACACCTAGAGTTTCATGTGTAGTAGAAACGATGTATGAGTATCTGAATAGTCTGGATGACAAGGATATAGGTCCTGAATTTCATCGCGTTTTTATAAAAAACAAAAAGGTTGTGAAACAAAGAGGTTCTATGCCTTTAGCGCTAGGAAGTGGTCAAGGTCATGCTCTTCGTATGCTTCAAAGTATCAACTACAATATGTCCACTGATGATGCTGCTGATTTGGCGTTTAAAACTTTATTTAATGCAACCTACTATGATAAGCATAGTGGTGGAGAACTGAAAGGTAATTACCTATCTTCTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000502 GO:0001775 GO:0002376 GO:0002520 GO:0002521 GO:0003674 GO:0003824 GO:0004175 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005783 GO:0005789 GO:0005829 GO:0005839 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010498 GO:0010499 GO:0012505 GO:0016020 GO:0016043 GO:0016579 GO:0016787 GO:0019221 GO:0019222 GO:0019538 GO:0019774 GO:0019882 GO:0019941 GO:0022607 GO:0023052 GO:0030097 GO:0030098 GO:0030154 GO:0030162 GO:0030163 GO:0030217 GO:0031597 GO:0031974 GO:0031981 GO:0031984 GO:0032501 GO:0032502 GO:0032991 GO:0034097 GO:0034340 GO:0034515 GO:0034622 GO:0036037 GO:0036211 GO:0042110 GO:0042175 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043248 GO:0043374 GO:0043412 GO:0043632 GO:0043687 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044432 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045087 GO:0045321 GO:0045444 GO:0046631 GO:0046632 GO:0046649 GO:0048513 GO:0048534 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051246 GO:0051336 GO:0051603 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0060337 GO:0065003 GO:0065007 GO:0065009 GO:0070011 GO:0070013 GO:0070646 GO:0070647 GO:0070887 GO:0071310 GO:0071345 GO:0071357 GO:0071704 GO:0071840 GO:0080090 GO:0080129 GO:0098827 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369 GO:1990111
KEGG Pathways
Metabolic & Signaling
ko02010 ko03050 ko04145 ko04612 ko05168 ko05340 map02010 map03050 map04145 map04612 map05168 map05340
Pfam Domains
Protein Families
Proteasome

Protein Analysis

177

Amino Acids

19.97

Weight (kDa)

6.2

Isoelectric Point (pI)

30.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 323
AccII CGCG 1 cut(s) 315
AciI CCGC 2 cut(s) 83, 203
AcoI YGGCCR 1 cut(s) 114
AcsI RAATTY 1 cut(s) 305
AfaI GTAC 1 cut(s) 169
AfeI AGCGCT 1 cut(s) 369
AgsI TTSAA 2 cut(s) 178, 407
AluBI AGCT 2 cut(s) 41, 73
AluI AGCT 2 cut(s) 41, 73
Aor51HI AGCGCT 1 cut(s) 369
AoxI GGCC 1 cut(s) 114
ApeKI GCWGC 1 cut(s) 440
ApoI RAATTY 1 cut(s) 305
Asp700I GAANNNNTTC 1 cut(s) 72
AspLEI GCGC 1 cut(s) 370
AspS9I GGNCC 1 cut(s) 299
AvaII GGWCC 1 cut(s) 299
BbvI GCAGC 1 cut(s) 427
BceAI ACGGC 1 cut(s) 40
BfaI CTAG 3 cut(s) 48, 234, 371
BfoI RGCGCY 1 cut(s) 371
BisI GCNGC 1 cut(s) 441
BlsI GCNGC 1 cut(s) 442
Bme18I GGWCC 1 cut(s) 299
BmgT120I GGNCC 1 cut(s) 299
BmsI GCATC 2 cut(s) 36, 427
BsaAI YACGTR 1 cut(s) 142
BseGI GGATG 3 cut(s) 79, 217, 289
BseXI GCAGC 1 cut(s) 427
Bsh1236I CGCG 1 cut(s) 315
BshFI GGCC 1 cut(s) 116
BsnI GGCC 1 cut(s) 116
Bsp1407I TGTACA 1 cut(s) 167
BspACI CCGC 2 cut(s) 83, 203
BspANI GGCC 1 cut(s) 116
BspFNI CGCG 1 cut(s) 315
BspQI GCTCTTC 1 cut(s) 399
BsrGI TGTACA 1 cut(s) 167
Bst4CI ACNGT 1 cut(s) 20
Bst6I CTCTTC 1 cut(s) 399
BstAUI TGTACA 1 cut(s) 167
BstBAI YACGTR 1 cut(s) 142
BstDEI CTNAG 1 cut(s) 86
BstF5I GGATG 3 cut(s) 79, 217, 289
BstFNI CGCG 1 cut(s) 315
BstH2I RGCGCY 1 cut(s) 371
BstHHI GCGC 1 cut(s) 370
BstMWI GCNNNNNNNGC 2 cut(s) 367, 449
BstSNI TACGTA 1 cut(s) 142
BstUI CGCG 1 cut(s) 315
BstV1I GCAGC 1 cut(s) 427
BsuRI GGCC 1 cut(s) 116
BtgZI GCGATG 1 cut(s) 296
BtsCI GGATG 3 cut(s) 79, 217, 289
BtsIMutI CAGTG 1 cut(s) 429
CfoI GCGC 1 cut(s) 370
Cfr13I GGNCC 1 cut(s) 299
Csp6I GTAC 1 cut(s) 168
CviAII CATG 4 cut(s) 31, 208, 243, 389
CviJI RGCY 5 cut(s) 41, 53, 73, 116, 161
CviKI_1 RGCY 5 cut(s) 41, 53, 73, 116, 161
CviQI GTAC 1 cut(s) 168
DdeI CTNAG 1 cut(s) 86
DraI TTTAAA 1 cut(s) 457
EaeI YGGCCR 1 cut(s) 114
Eam1104I CTCTTC 1 cut(s) 399
EarI CTCTTC 1 cut(s) 399
Eco105I TACGTA 1 cut(s) 142
Eco47I GGWCC 1 cut(s) 299
Eco47III AGCGCT 1 cut(s) 369
EcoO109I RGGNCCY 1 cut(s) 299
FaeI CATG 4 cut(s) 34, 211, 246, 392
FatI CATG 4 cut(s) 30, 207, 242, 388
Fnu4HI GCNGC 1 cut(s) 441
FokI GGATG 3 cut(s) 66, 224, 296
Fsp4HI GCNGC 1 cut(s) 441
FspBI CTAG 3 cut(s) 48, 234, 371
GlaI GCGC 1 cut(s) 369
GluI GCNGC 1 cut(s) 441
HaeII RGCGCY 1 cut(s) 371
HaeIII GGCC 1 cut(s) 116
HhaI GCGC 1 cut(s) 370
Hin1II CATG 4 cut(s) 34, 211, 246, 392
Hin6I GCGC 1 cut(s) 368
HinP1I GCGC 1 cut(s) 368
HindIII AAGCTT 1 cut(s) 71
HinfI GANTC 1 cut(s) 44
Hpy166II GTNNAC 3 cut(s) 16, 170, 429
Hpy188I TCNGA 1 cut(s) 273
Hpy188III TCNNGA 2 cut(s) 281, 302
Hpy8I GTNNAC 3 cut(s) 16, 170, 429
HpyCH4III ACNGT 1 cut(s) 20
HpyCH4IV ACGT 1 cut(s) 141
HpyCH4V TGCA 1 cut(s) 473
HpyF10VI GCNNNNNNNGC 2 cut(s) 367, 449
HpyF3I CTNAG 1 cut(s) 86
HpySE526I ACGT 1 cut(s) 141
Hsp92II CATG 4 cut(s) 34, 211, 246, 392
HspAI GCGC 1 cut(s) 368
LguI GCTCTTC 1 cut(s) 399
LmnI GCTCC 1 cut(s) 38
LpnPI CCDG 2 cut(s) 266, 315
Lsp1109I GCAGC 1 cut(s) 427
LweI GCATC 2 cut(s) 36, 427
MaeI CTAG 3 cut(s) 48, 234, 371
MaeII ACGT 1 cut(s) 141
MaeIII GTNAC 1 cut(s) 20
MboII GAAGA 3 cut(s) 117, 386, 516
MfeI CAATTG 1 cut(s) 173
MluCI AATT 5 cut(s) 90, 135, 173, 305, 514
MmeI TCCRAC 2 cut(s) 16, 153
MnlI CCTC 2 cut(s) 151, 344
MroXI GAANNNNTTC 1 cut(s) 72
MseI TTAA 3 cut(s) 456, 468, 532
MslI CAYNNNNRTG 1 cut(s) 495
MunI CAATTG 1 cut(s) 173
MvnI CGCG 1 cut(s) 315
MwoI GCNNNNNNNGC 2 cut(s) 367, 449
NlaIII CATG 4 cut(s) 34, 211, 246, 392
NmuCI GTSAC 1 cut(s) 20
PciSI GCTCTTC 1 cut(s) 399
PdmI GAANNNNTTC 1 cut(s) 72
PfeI GAWTC 1 cut(s) 44
PkrI GCNGC 1 cut(s) 442
Ppu21I YACGTR 1 cut(s) 142
PpuMI RGGWCCY 1 cut(s) 299
PsiI TTATAA 1 cut(s) 323
Psp5II RGGWCCY 1 cut(s) 299
PspPI GGNCC 1 cut(s) 299
PspPPI RGGWCCY 1 cut(s) 299
RsaI GTAC 1 cut(s) 169
RsaNI GTAC 1 cut(s) 168
RseI CAYNNNNRTG 1 cut(s) 495
SapI GCTCTTC 1 cut(s) 399
SaqAI TTAA 3 cut(s) 456, 468, 532
SatI GCNGC 1 cut(s) 441
Sau96I GGNCC 1 cut(s) 299
SfaNI GCATC 2 cut(s) 36, 427
SinI GGWCC 1 cut(s) 299
SmiMI CAYNNNNRTG 1 cut(s) 495
SnaBI TACGTA 1 cut(s) 142
Sse9I AATT 5 cut(s) 90, 135, 173, 305, 514
SsiI CCGC 2 cut(s) 83, 203
SspI AATATT 1 cut(s) 218
SspMI CTAG 3 cut(s) 48, 234, 371
TaaI ACNGT 1 cut(s) 20
TaiI ACGT 1 cut(s) 144
TasI AATT 5 cut(s) 90, 135, 173, 305, 514
TatI WGTACW 1 cut(s) 167
TfiI GAWTC 1 cut(s) 44
Tru1I TTAA 3 cut(s) 456, 468, 532
Tru9I TTAA 3 cut(s) 456, 468, 532
TscAI CASTG 1 cut(s) 436
TseFI GTSAC 1 cut(s) 20
TseI GCWGC 1 cut(s) 440
Tsp45I GTSAC 1 cut(s) 20
TspDTI ATGAA 5 cut(s) 75, 81, 228, 231, 299
TspRI CASTG 1 cut(s) 436
VpaK11BI GGWCC 1 cut(s) 299
XapI RAATTY 1 cut(s) 305
XmnI GAANNNNTTC 1 cut(s) 72
XspI CTAG 3 cut(s) 48, 234, 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.