Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0000613

Physical Location & Seq

Genomic Coordinates Reverse (-)

2389571 .. 2390566

Gene Structure 996 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G002600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGGTTGTGGAGCTTCAAAATACTCTTCGGACCAGAAACTCAAGGGGACGACAATTATTGGTTTTGTTTACCGTGACGGCATCATGGTTGGAGCTGAATCTAGGGCTTCTAATGAATATGAAAAGCTTCTACATCCGCTTAGAATTATAGACAACAGAACCAAAATGGCCGAAATATCTTCCAACATAATTTACGTATATCAAGGGGTAGAGGCTCATTGTACACAAATGAACTTGCATATAAGTAGTAAGTTTCCGGACATGGATGAATATCGTGGCAATATACCTAGAGTTTCATGTGTAGTAGAAACGATGTATGAGTATCTGAATAGTCTGGATGACAAGGATATAGTTGTGAAACAAACAGGTTCTATGCCTTTAGCGCTAGGAAGTGGTCAAGGTCATGCTCTTCGTATGCTTCAAAGTATCGACTACAATATGTCCACTGATGATGCTGCTGATTTGGCGTTTAAAACTTTATTTAATGCAACCTACTATGATAAGCATAGTGGTGGAGAACTGAAAGGTAATTACCTATCTTCTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0003674 GO:0003824 GO:0004175 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005789 GO:0005829 GO:0005839 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0010499 GO:0012505 GO:0016020 GO:0016043 GO:0016787 GO:0019538 GO:0019774 GO:0019941 GO:0022607 GO:0030163 GO:0031597 GO:0031984 GO:0032991 GO:0034515 GO:0034622 GO:0042175 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043248 GO:0043632 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0051603 GO:0065003 GO:0070011 GO:0071704 GO:0071840 GO:0080129 GO:0098827 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

Proteasome

Protein Analysis

182

Amino Acids

20.25

Weight (kDa)

5.7

Isoelectric Point (pI)

31.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000613)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13060 AT1G13060 AT1G13060 AT3G26340
fragaria_vesca	FvH4_1g01201 FvH4_4g24020 FvH4_6g30500
malus_domestica	MD10G1030600.v1.1 MD16G1116800.v1.1
prunus_persica	Prupe.1G229300_v2.0.a1 Prupe.1G229300_v2.0.a1 Prupe.1G229300_v2.0.a1
pyrus_communis	pycom10g01980 pycom13g10110
rosa_chinensis	RchiOBHm_Chr4g0430701 RchiOBHm_Chr5g0003071
rosa_laevigata	RLG00000006954 RLG00000031090 RLG00000031094 RLG00000031099 RLG00000031107 RLG00000031108 RLG00000031111 RLG00000031116 RLG00000032188
rosa_multiflora	Rmu_sc0000131.1_g000009 Rmu_sc0000146.1_g000015 Rmu_sc0002209.1_g000027
rosa_roxburghii	Rroxscaffold_1G00061170 Rroxscaffold_1G00061240 Rroxscaffold_1G00061300 Rroxscaffold_1G00072510 Rroxscaffold_1G00072750 Rroxscaffold_1G00072760 Rroxscaffold_5G00372440 Rroxscaffold_6G00429800 Rroxscaffold_6G00429810 Rroxscaffold_6G00429820 Rroxscaffold_6G00429850
rosa_rugosa	Rorug04G0245300 Rorug04G0402100 Rorug04G0402100 Rorug04G0402100 Rorug05G0025600 Rorug05G0026200
rosa_samantha	Rh3BG233200 Rh3DG047000 Rh3DG047300 Rh3DG047400 Rh3DG047800 Rh4AG053100 Rh4AG227500 Rh4BG230300 Rh4BG309300 Rh4CG242400 Rh4DG160600 Rh4DG225800 Rh5AG024300 Rh5AG024400 Rh5AG024700 Rh5AG027100 Rh5AG119900 Rh5BG118400 Rh5CG027100 Rh5CG027300 Rh5CG027700 Rh5CG128900 Rh5DG026900 Rh5DG027000 Rh5DG027700 Rh5DG028000 Rh5DG028500
rosa_wichuraiana	Rw0G010900 Rw3G003590 Rw4G026180 Rw5G002310 Rw5G002480 Rw5G002600 Rw5G010340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	256
AciI	CCGC	1 cut(s)	137
AcoI	YGGCCR	1 cut(s)	168
AfaI	GTAC	1 cut(s)	223
AfeI	AGCGCT	1 cut(s)	384
AgsI	TTSAA	2 cut(s)	18, 422
AluBI	AGCT	3 cut(s)	14, 95, 127
AluI	AGCT	3 cut(s)	14, 95, 127
Aor13HI	TCCGGA	1 cut(s)	256
Aor51HI	AGCGCT	1 cut(s)	384
AoxI	GGCC	1 cut(s)	168
ApeKI	GCWGC	1 cut(s)	455
Asp700I	GAANNNNTTC	1 cut(s)	126
AspLEI	GCGC	1 cut(s)	385
AspS9I	GGNCC	1 cut(s)	31
AvaII	GGWCC	1 cut(s)	31
BbvI	GCAGC	1 cut(s)	442
BceAI	ACGGC	1 cut(s)	94
BfaI	CTAG	3 cut(s)	102, 288, 386
BfoI	RGCGCY	1 cut(s)	386
BisI	GCNGC	1 cut(s)	456
BlsI	GCNGC	1 cut(s)	457
Bme18I	GGWCC	1 cut(s)	31
BmgT120I	GGNCC	1 cut(s)	31
BmsI	GCATC	2 cut(s)	90, 442
BpuEI	CTTGAG	1 cut(s)	26
BsaAI	YACGTR	1 cut(s)	196
BsaBI	GATNNNNATC	1 cut(s)	270
BsaWI	WCCGGW	1 cut(s)	256
Bse8I	GATNNNNATC	1 cut(s)	270
BseAI	TCCGGA	1 cut(s)	256
BseGI	GGATG	3 cut(s)	133, 271, 343
BseJI	GATNNNNATC	1 cut(s)	270
BseXI	GCAGC	1 cut(s)	442
BshFI	GGCC	1 cut(s)	170
BsiSI	CCGG	1 cut(s)	257
BslFI	GGGAC	1 cut(s)	61
BsmFI	GGGAC	1 cut(s)	61
BsnI	GGCC	1 cut(s)	170
Bsp13I	TCCGGA	1 cut(s)	256
Bsp1407I	TGTACA	1 cut(s)	221
BspACI	CCGC	1 cut(s)	137
BspANI	GGCC	1 cut(s)	170
BspEI	TCCGGA	1 cut(s)	256
BspQI	GCTCTTC	1 cut(s)	414
BsrGI	TGTACA	1 cut(s)	221
Bst4CI	ACNGT	1 cut(s)	74
Bst6I	CTCTTC	2 cut(s)	31, 414
BstAUI	TGTACA	1 cut(s)	221
BstBAI	YACGTR	1 cut(s)	196
BstDEI	CTNAG	1 cut(s)	140
BstF5I	GGATG	3 cut(s)	133, 271, 343
BstH2I	RGCGCY	1 cut(s)	386
BstHHI	GCGC	1 cut(s)	385
BstMWI	GCNNNNNNNGC	2 cut(s)	382, 464
BstSNI	TACGTA	1 cut(s)	196
BstV1I	GCAGC	1 cut(s)	442
BsuRI	GGCC	1 cut(s)	170
BtsCI	GGATG	3 cut(s)	133, 271, 343
BtsIMutI	CAGTG	1 cut(s)	444
CfoI	GCGC	1 cut(s)	385
Cfr13I	GGNCC	1 cut(s)	31
Csp6I	GTAC	1 cut(s)	222
CviAII	CATG	4 cut(s)	85, 262, 297, 404
CviJI	RGCY	6 cut(s)	14, 95, 107, 127, 170, 215
CviKI_1	RGCY	6 cut(s)	14, 95, 107, 127, 170, 215
CviQI	GTAC	1 cut(s)	222
DdeI	CTNAG	1 cut(s)	140
DraI	TTTAAA	1 cut(s)	472
EaeI	YGGCCR	1 cut(s)	168
Eam1104I	CTCTTC	2 cut(s)	31, 414
EarI	CTCTTC	2 cut(s)	31, 414
Eco105I	TACGTA	1 cut(s)	196
Eco47I	GGWCC	1 cut(s)	31
Eco47III	AGCGCT	1 cut(s)	384
FaeI	CATG	4 cut(s)	88, 265, 300, 407
FaqI	GGGAC	1 cut(s)	61
FatI	CATG	4 cut(s)	84, 261, 296, 403
Fnu4HI	GCNGC	1 cut(s)	456
FokI	GGATG	3 cut(s)	120, 278, 350
Fsp4HI	GCNGC	1 cut(s)	456
FspBI	CTAG	3 cut(s)	102, 288, 386
GlaI	GCGC	1 cut(s)	384
GluI	GCNGC	1 cut(s)	456
HaeII	RGCGCY	1 cut(s)	386
HaeIII	GGCC	1 cut(s)	170
HapII	CCGG	1 cut(s)	257
HhaI	GCGC	1 cut(s)	385
Hin1II	CATG	4 cut(s)	88, 265, 300, 407
Hin6I	GCGC	1 cut(s)	383
HinP1I	GCGC	1 cut(s)	383
HindIII	AAGCTT	1 cut(s)	125
HinfI	GANTC	1 cut(s)	98
HpaII	CCGG	1 cut(s)	257
Hpy166II	GTNNAC	3 cut(s)	70, 224, 444
Hpy188I	TCNGA	2 cut(s)	31, 327
Hpy188III	TCNNGA	2 cut(s)	257, 335
Hpy8I	GTNNAC	3 cut(s)	70, 224, 444
HpyCH4III	ACNGT	1 cut(s)	74
HpyCH4IV	ACGT	1 cut(s)	195
HpyCH4V	TGCA	2 cut(s)	238, 488
HpyF10VI	GCNNNNNNNGC	2 cut(s)	382, 464
HpyF3I	CTNAG	1 cut(s)	140
HpySE526I	ACGT	1 cut(s)	195
Hsp92II	CATG	4 cut(s)	88, 265, 300, 407
HspAI	GCGC	1 cut(s)	383
Kpn2I	TCCGGA	1 cut(s)	256
LguI	GCTCTTC	1 cut(s)	414
LmnI	GCTCC	2 cut(s)	11, 92
LpnPI	CCDG	4 cut(s)	47, 270, 320, 351
Lsp1109I	GCAGC	1 cut(s)	442
LweI	GCATC	2 cut(s)	90, 442
MaeI	CTAG	3 cut(s)	102, 288, 386
MaeII	ACGT	1 cut(s)	195
MaeIII	GTNAC	1 cut(s)	74
MboII	GAAGA	4 cut(s)	18, 171, 401, 531
MluCI	AATT	4 cut(s)	54, 144, 189, 529
MmeI	TCCRAC	2 cut(s)	70, 207
MnlI	CCTC	1 cut(s)	205
MroI	TCCGGA	1 cut(s)	256
MroXI	GAANNNNTTC	1 cut(s)	126
MseI	TTAA	3 cut(s)	471, 483, 547
MslI	CAYNNNNRTG	1 cut(s)	510
MspI	CCGG	1 cut(s)	257
MwoI	GCNNNNNNNGC	2 cut(s)	382, 464
NlaIII	CATG	4 cut(s)	88, 265, 300, 407
NmuCI	GTSAC	1 cut(s)	74
PciSI	GCTCTTC	1 cut(s)	414
PdmI	GAANNNNTTC	1 cut(s)	126
PfeI	GAWTC	1 cut(s)	98
PkrI	GCNGC	1 cut(s)	457
Ppu21I	YACGTR	1 cut(s)	196
PspPI	GGNCC	1 cut(s)	31
RsaI	GTAC	1 cut(s)	223
RsaNI	GTAC	1 cut(s)	222
RseI	CAYNNNNRTG	1 cut(s)	510
SapI	GCTCTTC	1 cut(s)	414
SaqAI	TTAA	3 cut(s)	471, 483, 547
SatI	GCNGC	1 cut(s)	456
Sau96I	GGNCC	1 cut(s)	31
SfaNI	GCATC	2 cut(s)	90, 442
SinI	GGWCC	1 cut(s)	31
SmiMI	CAYNNNNRTG	1 cut(s)	510
SmlI	CTYRAG	1 cut(s)	41
SmoI	CTYRAG	1 cut(s)	41
SnaBI	TACGTA	1 cut(s)	196
Sse9I	AATT	4 cut(s)	54, 144, 189, 529
SsiI	CCGC	1 cut(s)	137
SspMI	CTAG	3 cut(s)	102, 288, 386
TaaI	ACNGT	1 cut(s)	74
TaiI	ACGT	1 cut(s)	198
TaqI	TCGA	1 cut(s)	429
TasI	AATT	4 cut(s)	54, 144, 189, 529
TatI	WGTACW	1 cut(s)	221
TfiI	GAWTC	1 cut(s)	98
Tru1I	TTAA	3 cut(s)	471, 483, 547
Tru9I	TTAA	3 cut(s)	471, 483, 547
TscAI	CASTG	1 cut(s)	451
TseFI	GTSAC	1 cut(s)	74
TseI	GCWGC	1 cut(s)	455
Tsp45I	GTSAC	1 cut(s)	74
TspDTI	ATGAA	5 cut(s)	129, 135, 245, 282, 285
TspRI	CASTG	1 cut(s)	451
VpaK11BI	GGWCC	1 cut(s)	31
XmnI	GAANNNNTTC	1 cut(s)	126
XspI	CTAG	3 cut(s)	102, 288, 386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.