AT3G26340

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000613
Physical Location & Seq
Reverse (-)
9650316 .. 9652936
2621 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G26340.1

Sequence Viewer

Length: 822 bp
ATGAAGCTTGACACTAGTGGATTGGAGACAACTATGCCTGTGATTGGCTTTGGATCAAACAGTGAGATGCTTGATGGGTTTTCGTCTGCACCTTCGTTTGATCTTCCTCGTACCACTGATTTTGATGGGTTTCAGAAAAAAGCTGTGGAGATGGTGAAGCCTGCAAAGGGTACAACTACACTTGCGTTTATCTTTAAGGAAGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATCTCGTCGCAATCTGTGAAGAAGATTATTGAAATTAATCCTTATATGCTTGGTACAATGGCTGGTGGTGCTGCTGATTGTCAATTCTGGCACAGAAATCTGGGAATTAAGTGCCGTCTACATGAGCTGGCAAACAAAAGGAGAATCTCTGTTTCAGGAGCTTCAAAGCTTCTTGCTAACATGCTCTATTCATATCGTGGAATGGGACTTTCTGTTGGCACAATGATTGCTGGATGGGATGAAACAGGCCCTGGATTGTACTATGTTGACAACGAAGGAGGACGGCTTAAGGGAGACAGATTCTCTGTCGGTTCAGGTTCACCATACGCTTATGGTGTTCTGGACAGCGGATACAAATTCGATATGTCGGTTGAAGAAGCCTCAGAGTTAGCAAGGAGATCCATCTACCATGCTACATTCCGTGATGGAGCTAGTGGTGGAGTTGCTAGCGTGTACCACGTTGGGCCGCAAGGATGGACGAAACTCTCTGGAGACGACGTTGGCGAGCTACATTACCATTATTACCCCGTGGCTCCAATCACCGCGGAACATGTGATGGAAGAGGCTGCCGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005839 GO:0019774 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1905368 GO:1905369
KEGG Pathways
Metabolic & Signaling
ko03050 map03050
Pfam Domains
Protein Families
Proteasome

Protein Analysis

273

Amino Acids

29.49

Weight (kDa)

5.83

Isoelectric Point (pI)

41.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Proteasome PF00227 56 - 236 5e-52 Proteasome subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 364
AccII CGCG 1 cut(s) 791
AciI CCGC 4 cut(s) 594, 713, 789, 791
AclWI GGATC 2 cut(s) 61, 639
AcsI RAATTY 1 cut(s) 602
AfaI GTAC 5 cut(s) 112, 172, 301, 506, 701
AfiI CCNNNNNNNGG 2 cut(s) 44, 167
AflII CTTAAG 1 cut(s) 533
AflIII ACRYGT 1 cut(s) 796
AgsI TTSAA 3 cut(s) 278, 411, 620
AhlI ACTAGT 1 cut(s) 14
AjnI CCWGG 1 cut(s) 496
AluBI AGCT 9 cut(s) 7, 143, 215, 230, 373, 407, 415, 677, 754
AluI AGCT 9 cut(s) 7, 143, 215, 230, 373, 407, 415, 677, 754
Alw26I GTCTC 3 cut(s) 20, 534, 732
AlwI GGATC 2 cut(s) 61, 639
AlwNI CAGNNNCTG 1 cut(s) 497
Ama87I CYCGRG 1 cut(s) 225
AoxI GGCC 2 cut(s) 493, 710
ApeKI GCWGC 3 cut(s) 215, 317, 812
ApoI RAATTY 1 cut(s) 602
AseI ATTAAT 1 cut(s) 282
AspS9I GGNCC 2 cut(s) 494, 710
AsuHPI GGTGA 3 cut(s) 166, 558, 778
AsuNHI GCTAGC 2 cut(s) 230, 692
AvaI CYCGRG 1 cut(s) 225
BbvI GCAGC 3 cut(s) 202, 304, 799
BccI CCATC 8 cut(s) 68, 119, 145, 474, 656, 665, 714, 796
BceAI ACGGC 2 cut(s) 345, 545
BciT130I CCWGG 1 cut(s) 498
BciVI GTATCC 1 cut(s) 590
BcoDI GTCTC 3 cut(s) 20, 534, 732
BcuI ACTAGT 1 cut(s) 14
BfaI CTAG 4 cut(s) 15, 231, 678, 693
BfrI CTTAAG 1 cut(s) 533
BfuI GTATCC 1 cut(s) 590
BisI GCNGC 4 cut(s) 216, 318, 713, 813
BlsI GCNGC 4 cut(s) 217, 319, 714, 814
Bme1390I CCNGG 1 cut(s) 498
BmeT110I CYCGRG 1 cut(s) 225
BmgT120I GGNCC 2 cut(s) 494, 710
BmiI GGNNCC 1 cut(s) 780
BmrFI CCNGG 1 cut(s) 498
BmsI GCATC 1 cut(s) 57
BmtI GCTAGC 2 cut(s) 234, 696
BpmI CTGGAG 1 cut(s) 756
BsaJI CCNNGG 3 cut(s) 496, 774, 789
BsaXI ACNNNNNCTCC 2 cut(s) 729, 759
Bsc4I CCNNNNNNNGG 2 cut(s) 44, 167
BseBI CCWGG 1 cut(s) 498
BseDI CCNNGG 3 cut(s) 496, 774, 789
BseGI GGATG 3 cut(s) 485, 490, 725
BseLI CCNNNNNNNGG 2 cut(s) 44, 167
BseMII CTCAG 1 cut(s) 642
BseXI GCAGC 3 cut(s) 202, 304, 799
BsgI GTGCAG 1 cut(s) 72
Bsh1236I CGCG 1 cut(s) 791
BshFI GGCC 2 cut(s) 495, 712
BsiHKCI CYCGRG 1 cut(s) 225
BslFI GGGAC 1 cut(s) 465
BslI CCNNNNNNNGG 2 cut(s) 44, 167
BsmAI GTCTC 3 cut(s) 20, 534, 732
BsmBI CGTCTC 1 cut(s) 732
BsmFI GGGAC 1 cut(s) 465
BsnI GGCC 2 cut(s) 495, 712
BsoBI CYCGRG 1 cut(s) 225
Bsp143I GATC 3 cut(s) 53, 100, 644
BspACI CCGC 4 cut(s) 594, 713, 789, 791
BspANI GGCC 2 cut(s) 495, 712
BspCNI CTCAG 1 cut(s) 641
BspFNI CGCG 1 cut(s) 791
BspLI GGNNCC 1 cut(s) 780
BspOI GCTAGC 2 cut(s) 234, 696
BspPI GGATC 2 cut(s) 61, 639
BspTI CTTAAG 1 cut(s) 533
BssECI CCNNGG 3 cut(s) 496, 774, 789
BssMI GATC 3 cut(s) 53, 100, 644
Bst2UI CCWGG 1 cut(s) 498
Bst4CI ACNGT 1 cut(s) 62
Bst6I CTCTTC 1 cut(s) 801
BstAFI CTTAAG 1 cut(s) 533
BstC8I GCNNGC 5 cut(s) 162, 232, 375, 694, 752
BstDEI CTNAG 1 cut(s) 628
BstDSI CCRYGG 2 cut(s) 774, 789
BstF5I GGATG 3 cut(s) 485, 490, 725
BstFNI CGCG 1 cut(s) 791
BstKTI GATC 3 cut(s) 56, 103, 647
BstMAI GTCTC 3 cut(s) 20, 534, 732
BstMBI GATC 3 cut(s) 53, 100, 644
BstMWI GCNNNNNNNGC 1 cut(s) 314
BstNI CCWGG 1 cut(s) 498
BstNSI RCATGY 2 cut(s) 430, 800
BstSCI CCNGG 1 cut(s) 496
BstUI CGCG 1 cut(s) 791
BstV1I GCAGC 3 cut(s) 202, 304, 799
BstX2I RGATCY 1 cut(s) 644
BstYI RGATCY 1 cut(s) 644
BsuI GTATCC 1 cut(s) 590
BsuRI GGCC 2 cut(s) 495, 712
BtgI CCRYGG 2 cut(s) 774, 789
BtsCI GGATG 3 cut(s) 485, 490, 725
BtsIMutI CAGTG 2 cut(s) 67, 114
Cac8I GCNNGC 5 cut(s) 162, 232, 375, 694, 752
CaiI CAGNNNCTG 1 cut(s) 497
Cfr13I GGNCC 2 cut(s) 494, 710
Cfr42I CCGCGG 1 cut(s) 792
Csp6I GTAC 5 cut(s) 111, 171, 300, 505, 700
CspCI CAANNNNNGTGG 2 cut(s) 103, 138
CviAII CATG 5 cut(s) 235, 368, 427, 656, 797
CviQI GTAC 5 cut(s) 111, 171, 300, 505, 700
DdeI CTNAG 1 cut(s) 628
DpnI GATC 3 cut(s) 55, 102, 646
DpnII GATC 3 cut(s) 53, 100, 644
Eam1104I CTCTTC 1 cut(s) 801
EarI CTCTTC 1 cut(s) 801
Eco88I CYCGRG 1 cut(s) 225
EcoO109I RGGNCCY 1 cut(s) 494
EcoRII CCWGG 1 cut(s) 496
Esp3I CGTCTC 1 cut(s) 732
FaeI CATG 5 cut(s) 238, 371, 430, 659, 800
FaqI GGGAC 1 cut(s) 465
FatI CATG 5 cut(s) 234, 367, 426, 655, 796
FblI GTMKAC 1 cut(s) 364
Fnu4HI GCNGC 4 cut(s) 216, 318, 713, 813
FokI GGATG 3 cut(s) 492, 497, 732
Fsp4HI GCNGC 4 cut(s) 216, 318, 713, 813
FspBI CTAG 4 cut(s) 15, 231, 678, 693
GluI GCNGC 4 cut(s) 216, 318, 713, 813
GsuI CTGGAG 1 cut(s) 756
HaeIII GGCC 2 cut(s) 495, 712
Hin1II CATG 5 cut(s) 238, 371, 430, 659, 800
HincII GTYRAC 1 cut(s) 514
HindII GTYRAC 1 cut(s) 514
HindIII AAGCTT 2 cut(s) 5, 413
HinfI GANTC 3 cut(s) 221, 390, 546
HphI GGTGA 3 cut(s) 166, 558, 778
Hpy166II GTNNAC 4 cut(s) 365, 514, 566, 700
Hpy188I TCNGA 2 cut(s) 135, 631
Hpy188III TCNNGA 4 cut(s) 225, 402, 587, 735
Hpy8I GTNNAC 4 cut(s) 365, 514, 566, 700
Hpy99I CGWCG 2 cut(s) 256, 746
HpyAV CCTTC 3 cut(s) 102, 194, 515
HpyCH4III ACNGT 1 cut(s) 62
HpyCH4IV ACGT 2 cut(s) 705, 744
HpyCH4V TGCA 2 cut(s) 89, 164
HpyF10VI GCNNNNNNNGC 1 cut(s) 314
HpyF3I CTNAG 1 cut(s) 628
HpySE526I ACGT 2 cut(s) 705, 744
Hsp92II CATG 5 cut(s) 238, 371, 430, 659, 800
KspI CCGCGG 1 cut(s) 792
Kzo9I GATC 3 cut(s) 53, 100, 644
LmnI GCTCC 3 cut(s) 404, 674, 784
Lsp1109I GCAGC 3 cut(s) 202, 304, 799
LweI GCATC 1 cut(s) 57
MaeI CTAG 4 cut(s) 15, 231, 678, 693
MaeII ACGT 2 cut(s) 705, 744
MalI GATC 3 cut(s) 55, 102, 646
MboI GATC 3 cut(s) 53, 100, 644
MboII GAAGA 5 cut(s) 95, 277, 280, 632, 818
MflI RGATCY 1 cut(s) 644
MluCI AATT 4 cut(s) 279, 329, 351, 602
MnlI CCTC 5 cut(s) 117, 233, 518, 637, 802
MseI TTAA 4 cut(s) 195, 282, 354, 534
MspA1I CMGCKG 2 cut(s) 594, 791
MspCI CTTAAG 1 cut(s) 533
MspR9I CCNGG 1 cut(s) 498
MvaI CCWGG 1 cut(s) 498
MvnI CGCG 1 cut(s) 791
MwoI GCNNNNNNNGC 1 cut(s) 314
NdeII GATC 3 cut(s) 53, 100, 644
NheI GCTAGC 2 cut(s) 230, 692
NlaIII CATG 5 cut(s) 238, 371, 430, 659, 800
NlaIV GGNNCC 1 cut(s) 780
NspI RCATGY 2 cut(s) 430, 800
PaeR7I CTCGAG 1 cut(s) 225
PciI ACATGT 1 cut(s) 796
PcsI WCGNNNNNNNCGW 1 cut(s) 747
PfeI GAWTC 3 cut(s) 221, 390, 546
PkrI GCNGC 4 cut(s) 217, 319, 714, 814
PscI ACATGT 1 cut(s) 796
PshBI ATTAAT 1 cut(s) 282
Psp6I CCWGG 1 cut(s) 496
PspGI CCWGG 1 cut(s) 496
PspN4I GGNNCC 1 cut(s) 780
PspPI GGNCC 2 cut(s) 494, 710
PstNI CAGNNNCTG 1 cut(s) 497
PsuI RGATCY 1 cut(s) 644
RsaI GTAC 5 cut(s) 112, 172, 301, 506, 701
RsaNI GTAC 5 cut(s) 111, 171, 300, 505, 700
SacII CCGCGG 1 cut(s) 792
SaqAI TTAA 4 cut(s) 195, 282, 354, 534
SatI GCNGC 4 cut(s) 216, 318, 713, 813
Sau3AI GATC 3 cut(s) 53, 100, 644
Sau96I GGNCC 2 cut(s) 494, 710
ScrFI CCNGG 1 cut(s) 498
SfaNI GCATC 1 cut(s) 57
Sfr274I CTCGAG 1 cut(s) 225
Sfr303I CCGCGG 1 cut(s) 792
SgrBI CCGCGG 1 cut(s) 792
SlaI CTCGAG 1 cut(s) 225
SmlI CTYRAG 2 cut(s) 225, 533
SmoI CTYRAG 2 cut(s) 225, 533
SpeI ACTAGT 1 cut(s) 14
Sse9I AATT 4 cut(s) 279, 329, 351, 602
SsiI CCGC 4 cut(s) 594, 713, 789, 791
SspMI CTAG 4 cut(s) 15, 231, 678, 693
StyD4I CCNGG 1 cut(s) 496
TaaI ACNGT 1 cut(s) 62
TaiI ACGT 2 cut(s) 708, 747
TaqI TCGA 2 cut(s) 226, 606
TasI AATT 4 cut(s) 279, 329, 351, 602
TatI WGTACW 1 cut(s) 504
TauI GCSGC 1 cut(s) 715
TfiI GAWTC 3 cut(s) 221, 390, 546
Tru1I TTAA 4 cut(s) 195, 282, 354, 534
Tru9I TTAA 4 cut(s) 195, 282, 354, 534
TscAI CASTG 2 cut(s) 67, 121
TseI GCWGC 3 cut(s) 215, 317, 812
TspDTI ATGAA 3 cut(s) 17, 426, 501
TspGWI ACGGA 1 cut(s) 656
TspRI CASTG 2 cut(s) 67, 121
Vha464I CTTAAG 1 cut(s) 533
VspI ATTAAT 1 cut(s) 282
XapI RAATTY 1 cut(s) 602
XceI RCATGY 2 cut(s) 430, 800
XhoI CTCGAG 1 cut(s) 225
XmiI GTMKAC 1 cut(s) 364
XspI CTAG 4 cut(s) 15, 231, 678, 693
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.