Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000613

Physical Location & Seq

Genomic Coordinates Forward (+)

93782942 .. 93784139

Gene Structure 1198 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00072760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGCCTGCAGCGCTAGGAAGTGGTCAAGTTCATGCTCTTCGTATCCTTAATAAAAGTTACAACTACAATATGTCCACTGCTGATGCTATTGATTTGGCACGTAAAGCTTTATTTAATGCAACCTTCTATGACAAGCATAGTGGTGGAGAACTGAAAGATATTACGACCATCACCGTCGCTATGAACGGAAAACACTTGGTTGTGGATGCCGGGATCCAACCTATTTCTGCAAATGACCTTATAGAACACTTCAATCGTGGAGTCGCCGGCGACGAGGTTGCAGCTCTGCATGTCCGGTTGCAGTTGCAGGTCGGGTCGCTGCCTAGAAACCCCGCAACCCCGACCTGCTCCAACTTCAATCGCTGTCCGGACGCGTGCGGAAGCCTCCGGCCTCCGTCGGGCAAGCTCCGCGCCGCCGTCGCTACTCGGGAACAGCCCTGCTGCGTCCGCCGTAGATCGGGCCTCCCCTCTGTAAATTGGGAGGTGATCGCCTCTACTTCCACCGCCTACTTCCACCGCCTTGTGTTCGAGTCCGACGATGATGCGAAAAGGGCATATGAAACTACAACTCCTCATGGTCGAACTACTCCCTCGTACCTAGAACCACTACTACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000502 GO:0003674 GO:0003824 GO:0004175 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005813 GO:0005815 GO:0005829 GO:0005839 GO:0005856 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006979 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007098 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0015630 GO:0016043 GO:0016579 GO:0016787 GO:0019538 GO:0019774 GO:0019941 GO:0022402 GO:0030163 GO:0031023 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043632 GO:0043687 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051603 GO:0070011 GO:0070013 GO:0070646 GO:0070647 GO:0071704 GO:0071840 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

Proteasome

Protein Analysis

205

Amino Acids

22.3

Weight (kDa)

8.63

Isoelectric Point (pI)

45.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Proteasome	PF00227	3 - 51	3.4e-06	Proteasome subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000613)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13060 AT1G13060 AT1G13060 AT3G26340
fragaria_vesca	FvH4_1g01201 FvH4_4g24020 FvH4_6g30500
malus_domestica	MD10G1030600.v1.1 MD16G1116800.v1.1
prunus_persica	Prupe.1G229300_v2.0.a1 Prupe.1G229300_v2.0.a1 Prupe.1G229300_v2.0.a1
pyrus_communis	pycom10g01980 pycom13g10110
rosa_chinensis	RchiOBHm_Chr4g0430701 RchiOBHm_Chr5g0003071
rosa_laevigata	RLG00000006954 RLG00000031090 RLG00000031094 RLG00000031099 RLG00000031107 RLG00000031108 RLG00000031111 RLG00000031116 RLG00000032188
rosa_multiflora	Rmu_sc0000131.1_g000009 Rmu_sc0000146.1_g000015 Rmu_sc0002209.1_g000027
rosa_roxburghii	Rroxscaffold_1G00061170 Rroxscaffold_1G00061240 Rroxscaffold_1G00061300 Rroxscaffold_1G00072510 Rroxscaffold_1G00072750 Rroxscaffold_1G00072760 Rroxscaffold_5G00372440 Rroxscaffold_6G00429800 Rroxscaffold_6G00429810 Rroxscaffold_6G00429820 Rroxscaffold_6G00429850
rosa_rugosa	Rorug04G0245300 Rorug04G0402100 Rorug04G0402100 Rorug04G0402100 Rorug05G0025600 Rorug05G0026200
rosa_samantha	Rh3BG233200 Rh3DG047000 Rh3DG047300 Rh3DG047400 Rh3DG047800 Rh4AG053100 Rh4AG227500 Rh4BG230300 Rh4BG309300 Rh4CG242400 Rh4DG160600 Rh4DG225800 Rh5AG024300 Rh5AG024400 Rh5AG024700 Rh5AG027100 Rh5AG119900 Rh5BG118400 Rh5CG027100 Rh5CG027300 Rh5CG027700 Rh5CG128900 Rh5DG026900 Rh5DG027000 Rh5DG027700 Rh5DG028000 Rh5DG028500
rosa_wichuraiana	Rw0G010900 Rw3G003590 Rw4G026180 Rw5G002310 Rw5G002480 Rw5G002600 Rw5G010340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	298, 353
AccII	CGCG	2 cut(s)	374, 411
AccIII	TCCGGA	1 cut(s)	367
AciI	CCGC	7 cut(s)	333, 378, 409, 414, 448, 504, 517
AclWI	GGATC	2 cut(s)	208, 221
AfaI	GTAC	1 cut(s)	596
AfeI	AGCGCT	1 cut(s)	12
AfiI	CCNNNNNNNGG	2 cut(s)	398, 457
AflIII	ACRYGT	1 cut(s)	372
AgsI	TTSAA	2 cut(s)	253, 358
AluBI	AGCT	3 cut(s)	107, 284, 406
AluI	AGCT	3 cut(s)	107, 284, 406
AlwI	GGATC	2 cut(s)	208, 221
Ama87I	CYCGRG	1 cut(s)	426
Aor13HI	TCCGGA	1 cut(s)	367
Aor51HI	AGCGCT	1 cut(s)	12
AoxI	GGCC	2 cut(s)	389, 460
ApeKI	GCWGC	4 cut(s)	8, 281, 319, 441
AspLEI	GCGC	2 cut(s)	13, 413
AspS9I	GGNCC	1 cut(s)	460
AsuC2I	CCSGG	1 cut(s)	211
AsuHPI	GGTGA	2 cut(s)	163, 496
AvaI	CYCGRG	1 cut(s)	426
BamHI	GGATCC	1 cut(s)	213
BbvI	GCAGC	4 cut(s)	20, 293, 306, 428
BccI	CCATC	1 cut(s)	176
BceAI	ACGGC	2 cut(s)	401, 435
BcgI	CGANNNNNNTGC	4 cut(s)	260, 294, 524, 558
BciVI	GTATCC	1 cut(s)	53
BcnI	CCSGG	1 cut(s)	211
BfaI	CTAG	3 cut(s)	14, 324, 599
BfmI	CTRYAG	1 cut(s)	6
BfoI	RGCGCY	1 cut(s)	14
BfuAI	ACCTGC	2 cut(s)	298, 353
BfuI	GTATCC	1 cut(s)	53
BisI	GCNGC	5 cut(s)	9, 282, 320, 414, 442
BlsI	GCNGC	5 cut(s)	10, 283, 321, 415, 443
Bme1390I	CCNGG	1 cut(s)	211
BmeT110I	CYCGRG	1 cut(s)	426
BmgT120I	GGNCC	1 cut(s)	460
BmiI	GGNNCC	1 cut(s)	215
BmrFI	CCNGG	1 cut(s)	211
BmsI	GCATC	3 cut(s)	73, 196, 532
BpuMI	CCSGG	1 cut(s)	211
BsaAI	YACGTR	1 cut(s)	101
BsaWI	WCCGGW	2 cut(s)	294, 367
BsaXI	ACNNNNNCTCC	2 cut(s)	553, 583
Bsc4I	CCNNNNNNNGG	2 cut(s)	398, 457
Bse118I	RCCGGY	1 cut(s)	266
BseAI	TCCGGA	1 cut(s)	367
BseGI	GGATG	1 cut(s)	211
BseLI	CCNNNNNNNGG	2 cut(s)	398, 457
BseRI	GAGGAG	1 cut(s)	561
BseXI	GCAGC	4 cut(s)	20, 293, 306, 428
Bsh1236I	CGCG	2 cut(s)	374, 411
BshFI	GGCC	2 cut(s)	391, 462
BsiHKCI	CYCGRG	1 cut(s)	426
BsiSI	CCGG	5 cut(s)	210, 267, 295, 368, 388
BslI	CCNNNNNNNGG	2 cut(s)	398, 457
BsnI	GGCC	2 cut(s)	391, 462
BsoBI	CYCGRG	1 cut(s)	426
Bsp13I	TCCGGA	1 cut(s)	367
Bsp143I	GATC	3 cut(s)	213, 455, 486
BspACI	CCGC	7 cut(s)	333, 378, 409, 414, 448, 504, 517
BspANI	GGCC	2 cut(s)	391, 462
BspEI	TCCGGA	1 cut(s)	367
BspFNI	CGCG	2 cut(s)	374, 411
BspLI	GGNNCC	1 cut(s)	215
BspMAI	CTGCAG	1 cut(s)	10
BspMI	ACCTGC	2 cut(s)	298, 353
BspPI	GGATC	2 cut(s)	208, 221
BspQI	GCTCTTC	1 cut(s)	42
BsrFI	RCCGGY	1 cut(s)	266
BssAI	RCCGGY	1 cut(s)	266
BssMI	GATC	3 cut(s)	213, 455, 486
Bst4CI	ACNGT	1 cut(s)	175
Bst6I	CTCTTC	1 cut(s)	42
BstBAI	YACGTR	1 cut(s)	101
BstC8I	GCNNGC	4 cut(s)	6, 268, 376, 404
BstF5I	GGATG	1 cut(s)	211
BstFNI	CGCG	2 cut(s)	374, 411
BstH2I	RGCGCY	1 cut(s)	14
BstHHI	GCGC	2 cut(s)	13, 413
BstKTI	GATC	3 cut(s)	216, 458, 489
BstMBI	GATC	3 cut(s)	213, 455, 486
BstMWI	GCNNNNNNNGC	6 cut(s)	10, 104, 408, 419, 447, 551
BstNSI	RCATGY	1 cut(s)	293
BstSCI	CCNGG	1 cut(s)	209
BstSFI	CTRYAG	1 cut(s)	6
BstUI	CGCG	2 cut(s)	374, 411
BstV1I	GCAGC	4 cut(s)	20, 293, 306, 428
BstX2I	RGATCY	1 cut(s)	213
BstYI	RGATCY	1 cut(s)	213
BsuI	GTATCC	1 cut(s)	53
BsuRI	GGCC	2 cut(s)	391, 462
BtsCI	GGATG	1 cut(s)	211
BtsI	GCAGTG	1 cut(s)	75
BtsIMutI	CAGTG	1 cut(s)	75
BveI	ACCTGC	2 cut(s)	298, 353
Cac8I	GCNNGC	4 cut(s)	6, 268, 376, 404
CfoI	GCGC	2 cut(s)	13, 413
Cfr10I	RCCGGY	1 cut(s)	266
Cfr13I	GGNCC	1 cut(s)	460
CseI	GACGC	2 cut(s)	380, 433
Csp6I	GTAC	1 cut(s)	595
CspCI	CAANNNNNGTGG	2 cut(s)	121, 156
CviAII	CATG	3 cut(s)	32, 290, 575
CviJI	RGCY	7 cut(s)	107, 284, 384, 391, 406, 436, 462
CviKI_1	RGCY	7 cut(s)	107, 284, 384, 391, 406, 436, 462
CviQI	GTAC	1 cut(s)	595
DpnI	GATC	3 cut(s)	215, 457, 488
DpnII	GATC	3 cut(s)	213, 455, 486
Eam1104I	CTCTTC	1 cut(s)	42
EarI	CTCTTC	1 cut(s)	42
EciI	GGCGGA	1 cut(s)	437
Eco47III	AGCGCT	1 cut(s)	12
Eco88I	CYCGRG	1 cut(s)	426
FaeI	CATG	3 cut(s)	35, 293, 578
FatI	CATG	3 cut(s)	31, 289, 574
FauI	CCCGC	1 cut(s)	340
FauNDI	CATATG	1 cut(s)	556
Fnu4HI	GCNGC	5 cut(s)	9, 282, 320, 414, 442
FokI	GGATG	1 cut(s)	218
Fsp4HI	GCNGC	5 cut(s)	9, 282, 320, 414, 442
FspBI	CTAG	3 cut(s)	14, 324, 599
GlaI	GCGC	2 cut(s)	12, 412
GluI	GCNGC	5 cut(s)	9, 282, 320, 414, 442
HaeII	RGCGCY	1 cut(s)	14
HaeIII	GGCC	2 cut(s)	391, 462
HapII	CCGG	5 cut(s)	210, 267, 295, 368, 388
HgaI	GACGC	2 cut(s)	380, 433
HhaI	GCGC	2 cut(s)	13, 413
Hin1II	CATG	3 cut(s)	35, 293, 578
Hin6I	GCGC	2 cut(s)	11, 411
HinP1I	GCGC	2 cut(s)	11, 411
HindIII	AAGCTT	1 cut(s)	105
HinfI	GANTC	2 cut(s)	261, 530
HpaII	CCGG	5 cut(s)	210, 267, 295, 368, 388
HphI	GGTGA	2 cut(s)	163, 496
Hpy166II	GTNNAC	1 cut(s)	75
Hpy188I	TCNGA	1 cut(s)	535
Hpy188III	TCNNGA	2 cut(s)	368, 428
Hpy8I	GTNNAC	1 cut(s)	75
Hpy99I	CGWCG	5 cut(s)	179, 275, 400, 422, 539
HpyAV	CCTTC	1 cut(s)	133
HpyCH4III	ACNGT	1 cut(s)	175
HpyCH4IV	ACGT	1 cut(s)	100
HpyCH4V	TGCA	7 cut(s)	8, 119, 230, 281, 289, 301, 307
HpyF10VI	GCNNNNNNNGC	6 cut(s)	10, 104, 408, 419, 447, 551
HpySE526I	ACGT	1 cut(s)	100
Hsp92II	CATG	3 cut(s)	35, 293, 578
HspAI	GCGC	2 cut(s)	11, 411
Kpn2I	TCCGGA	1 cut(s)	367
KroI	GCCGGC	1 cut(s)	266
KroNI	GCCGGC	1 cut(s)	268
Kzo9I	GATC	3 cut(s)	213, 455, 486
LguI	GCTCTTC	1 cut(s)	42
LmnI	GCTCC	2 cut(s)	353, 411
LpnPI	CCDG	9 cut(s)	18, 223, 280, 293, 308, 358, 381, 401, 451
Lsp1109I	GCAGC	4 cut(s)	20, 293, 306, 428
LweI	GCATC	3 cut(s)	73, 196, 532
MaeI	CTAG	3 cut(s)	14, 324, 599
MaeII	ACGT	1 cut(s)	100
MaeIII	GTNAC	1 cut(s)	56
MalI	GATC	3 cut(s)	215, 457, 488
MboI	GATC	3 cut(s)	213, 455, 486
MboII	GAAGA	1 cut(s)	29
MflI	RGATCY	1 cut(s)	213
MluCI	AATT	1 cut(s)	475
MluI	ACGCGT	1 cut(s)	372
MlyI	GAGTC	2 cut(s)	270, 539
MmeI	TCCRAC	3 cut(s)	241, 375, 558
MnlI	CCTC	9 cut(s)	268, 395, 402, 473, 475, 478, 502, 582, 601
MreI	CGCCGGCG	1 cut(s)	266
MroI	TCCGGA	1 cut(s)	367
MroNI	GCCGGC	1 cut(s)	266
MseI	TTAA	2 cut(s)	48, 114
MslI	CAYNNNNRTG	1 cut(s)	141
MspI	CCGG	5 cut(s)	210, 267, 295, 368, 388
MspR9I	CCNGG	1 cut(s)	211
MvnI	CGCG	2 cut(s)	374, 411
MwoI	GCNNNNNNNGC	6 cut(s)	10, 104, 408, 419, 447, 551
NaeI	GCCGGC	1 cut(s)	268
NciI	CCSGG	1 cut(s)	211
NdeI	CATATG	1 cut(s)	556
NdeII	GATC	3 cut(s)	213, 455, 486
NgoMIV	GCCGGC	1 cut(s)	266
NlaIII	CATG	3 cut(s)	35, 293, 578
NlaIV	GGNNCC	1 cut(s)	215
NspI	RCATGY	1 cut(s)	293
PciSI	GCTCTTC	1 cut(s)	42
PcsI	WCGNNNNNNNCGW	2 cut(s)	270, 534
PdiI	GCCGGC	1 cut(s)	268
PkrI	GCNGC	5 cut(s)	10, 283, 321, 415, 443
PleI	GAGTC	2 cut(s)	269, 538
PpsI	GAGTC	2 cut(s)	269, 538
Ppu21I	YACGTR	1 cut(s)	101
PspN4I	GGNNCC	1 cut(s)	215
PspPI	GGNCC	1 cut(s)	460
PsrI	GAACNNNNNNTAC	1 cut(s)	594
PstI	CTGCAG	1 cut(s)	10
PsuI	RGATCY	1 cut(s)	213
RsaI	GTAC	1 cut(s)	596
RsaNI	GTAC	1 cut(s)	595
RseI	CAYNNNNRTG	1 cut(s)	141
SapI	GCTCTTC	1 cut(s)	42
SaqAI	TTAA	2 cut(s)	48, 114
SatI	GCNGC	5 cut(s)	9, 282, 320, 414, 442
Sau3AI	GATC	3 cut(s)	213, 455, 486
Sau96I	GGNCC	1 cut(s)	460
SchI	GAGTC	2 cut(s)	270, 539
ScrFI	CCNGG	1 cut(s)	211
SfaNI	GCATC	3 cut(s)	73, 196, 532
SfcI	CTRYAG	1 cut(s)	6
SgrAI	CRCCGGYG	1 cut(s)	266
SmiMI	CAYNNNNRTG	1 cut(s)	141
Sse9I	AATT	1 cut(s)	475
SsiI	CCGC	7 cut(s)	333, 378, 409, 414, 448, 504, 517
SspMI	CTAG	3 cut(s)	14, 324, 599
StyD4I	CCNGG	1 cut(s)	209
TaaI	ACNGT	1 cut(s)	175
TaiI	ACGT	1 cut(s)	103
TaqI	TCGA	2 cut(s)	528, 580
TasI	AATT	1 cut(s)	475
TauI	GCSGC	1 cut(s)	416
Tru1I	TTAA	2 cut(s)	48, 114
Tru9I	TTAA	2 cut(s)	48, 114
TscAI	CASTG	1 cut(s)	82
TseI	GCWGC	4 cut(s)	8, 281, 319, 441
TspDTI	ATGAA	3 cut(s)	20, 197, 573
TspGWI	ACGGA	2 cut(s)	201, 384
TspRI	CASTG	1 cut(s)	82
XceI	RCATGY	1 cut(s)	293
XspI	CTAG	3 cut(s)	14, 324, 599

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.