Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0000613

Physical Location & Seq

Genomic Coordinates Forward (+)

10722682 .. 10724381

Gene Structure 1700 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG128900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGGGTTTGAGAAAACCAATCAAGCTAGAGAAGGGGACAATCACTCTTGCTTTTCGATTCAAGGAAGGCATTATGATTGGTGTTGATTCTAGAATCACGCGGAAACAGACTATAGTTTCAGACAAGAAGCAGAAGTTTTCTGAAATATCATCCAACATATTTTGTACAATGATGGGGAGAGTTCATGTCTGGGAAAACATGGCCCTATATGTGCAGCAAAAGGTAAAGAGCGAAGAACGTCTTCGCTGTGCTCCTGCAACAGTTTCATATGCAGCAGAAAAGGCGCTTGAACATTTAGAGTATGAATTCAGTGACTATGAATATATGGAGGATGAAGAGGATTTAATATTTGGCACTATCATCGCTGGATGGCAAAAAACAACGGGTTTTGAACTTTATAATGTTAACCTGGACGGCAACAGGGCTTGGAAGACAGCCTGTAAAAGTTCAATAATACTAGGATCTGGTGCTAAATTTGCTGAGCATGTTATGGACTCAGTTAAGAACTTCTACGACATGTCTAGTGAAGATGCTGCTGACTTTGCCCTAAAAGCACTGTTTATGGCAACCTTTTATGATAAGTGGTGTGGAGGGACTCTACATGTTTATCATGTGCATGAAAATGGATATCAAGAGAAACGCAGCCTCGATGCTTTAGAAGTCTACTCGCGATATTACAACATTTACGACCTTTACACATATGAACCAATGACGTTTTTGTTGCTGTATTCTACAGATTACCAACCCATTGCTGGCGATGATCTCATAAACCTGGGATCAGATGAAGGGCTAGTGGCAGCTCATCTTGTAGCAAAGAAGCGAGACTTTAACATCCACCGCCTCGTGTTCAGCTCTGAGAATGAGGCTTCAACAGCATACGAAGCTATTGCTAAAGTTGAGCCTAGAGGTGCATCTAGGTTCCCGCGTCTGCAAAATTTTTGTCTTTGTGAATTAAAAATAAAGAGTAAAAGAGTTCCAGTATATGTCCAAAAAAGCTCAAGAGAATTGTTGCAAAGCATATGCGAATTGCCTCCAGCTCCAGAGACCAACCAATGTTGGCTGCCACGCATAATCAGATTGCCTTCATGTTTCGGGTGTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000502 GO:0003674 GO:0003824 GO:0004175 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005813 GO:0005815 GO:0005829 GO:0005839 GO:0005856 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006979 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007098 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0015630 GO:0016043 GO:0016579 GO:0016787 GO:0019538 GO:0019774 GO:0019941 GO:0022402 GO:0030163 GO:0031023 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043632 GO:0043687 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051603 GO:0070011 GO:0070013 GO:0070646 GO:0070647 GO:0071704 GO:0071840 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

Proteasome

Protein Analysis

367

Amino Acids

42.03

Weight (kDa)

6.28

Isoelectric Point (pI)

46.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Proteasome	PF00227	10 - 205	1.9e-24	Proteasome subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000613)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13060 AT1G13060 AT1G13060 AT3G26340
fragaria_vesca	FvH4_1g01201 FvH4_4g24020 FvH4_6g30500
malus_domestica	MD10G1030600.v1.1 MD16G1116800.v1.1
prunus_persica	Prupe.1G229300_v2.0.a1 Prupe.1G229300_v2.0.a1 Prupe.1G229300_v2.0.a1
pyrus_communis	pycom10g01980 pycom13g10110
rosa_chinensis	RchiOBHm_Chr4g0430701 RchiOBHm_Chr5g0003071
rosa_laevigata	RLG00000006954 RLG00000031090 RLG00000031094 RLG00000031099 RLG00000031107 RLG00000031108 RLG00000031111 RLG00000031116 RLG00000032188
rosa_multiflora	Rmu_sc0000131.1_g000009 Rmu_sc0000146.1_g000015 Rmu_sc0002209.1_g000027
rosa_roxburghii	Rroxscaffold_1G00061170 Rroxscaffold_1G00061240 Rroxscaffold_1G00061300 Rroxscaffold_1G00072510 Rroxscaffold_1G00072750 Rroxscaffold_1G00072760 Rroxscaffold_5G00372440 Rroxscaffold_6G00429800 Rroxscaffold_6G00429810 Rroxscaffold_6G00429820 Rroxscaffold_6G00429850
rosa_rugosa	Rorug04G0245300 Rorug04G0402100 Rorug04G0402100 Rorug04G0402100 Rorug05G0025600 Rorug05G0026200
rosa_samantha	Rh3BG233200 Rh3DG047000 Rh3DG047300 Rh3DG047400 Rh3DG047800 Rh4AG053100 Rh4AG227500 Rh4BG230300 Rh4BG309300 Rh4CG242400 Rh4DG160600 Rh4DG225800 Rh5AG024300 Rh5AG024400 Rh5AG024700 Rh5AG027100 Rh5AG119900 Rh5BG118400 Rh5CG027100 Rh5CG027300 Rh5CG027700 Rh5CG128900 Rh5DG026900 Rh5DG027000 Rh5DG027700 Rh5DG028000 Rh5DG028500
rosa_wichuraiana	Rw0G010900 Rw3G003590 Rw4G026180 Rw5G002310 Rw5G002480 Rw5G002600 Rw5G010340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	399
AccI	GTMKAC	1 cut(s)	663
AccII	CGCG	3 cut(s)	100, 670, 925
AciI	CCGC	3 cut(s)	100, 838, 923
AclWI	GGATC	2 cut(s)	469, 784
AcsI	RAATTY	3 cut(s)	305, 473, 934
AfaI	GTAC	1 cut(s)	166
AfiI	CCNNNNNNNGG	1 cut(s)	752
AflIII	ACRYGT	2 cut(s)	516, 601
AgsI	TTSAA	5 cut(s)	61, 290, 392, 450, 870
AjnI	CCWGG	2 cut(s)	408, 771
AluBI	AGCT	6 cut(s)	25, 800, 852, 884, 996, 1037
AluI	AGCT	6 cut(s)	25, 800, 852, 884, 996, 1037
Alw21I	GWGCWC	1 cut(s)	253
Alw26I	GTCTC	2 cut(s)	816, 1037
AlwI	GGATC	2 cut(s)	469, 784
AoxI	GGCC	1 cut(s)	201
ApeKI	GCWGC	6 cut(s)	214, 272, 533, 642, 797, 1060
ApoI	RAATTY	3 cut(s)	305, 473, 934
ArsI	GACNNNNNNTTYG	2 cut(s)	925, 957
Asp700I	GAANNNNTTC	1 cut(s)	240
AspLEI	GCGC	1 cut(s)	286
AspS9I	GGNCC	1 cut(s)	202
BauI	CACGAG	1 cut(s)	842
BbsI	GAAGAC	2 cut(s)	233, 437
Bbv12I	GWGCWC	1 cut(s)	253
BbvI	GCAGC	6 cut(s)	226, 284, 520, 654, 809, 1047
BccI	CCATC	2 cut(s)	166, 363
BceAI	ACGGC	1 cut(s)	430
BcgI	CGANNNNNNTGC	4 cut(s)	343, 377, 869, 903
BciT130I	CCWGG	2 cut(s)	410, 773
BcoDI	GTCTC	2 cut(s)	816, 1037
BfaI	CTAG	7 cut(s)	26, 90, 458, 522, 791, 903, 915
BfmI	CTRYAG	2 cut(s)	111, 732
BfoI	RGCGCY	1 cut(s)	287
BisI	GCNGC	6 cut(s)	215, 273, 534, 643, 798, 1061
BlpI	GCTNAGC	1 cut(s)	480
BlsI	GCNGC	6 cut(s)	216, 274, 535, 644, 799, 1062
Bme1390I	CCNGG	2 cut(s)	410, 773
BmgT120I	GGNCC	1 cut(s)	202
BmiI	GGNNCC	1 cut(s)	920
BmrFI	CCNGG	2 cut(s)	410, 773
BmsI	GCATC	3 cut(s)	520, 640, 920
BpiI	GAAGAC	2 cut(s)	233, 437
BpmI	CTGGAG	2 cut(s)	1017, 1023
Bpu1102I	GCTNAGC	1 cut(s)	480
BpuEI	CTTGAG	1 cut(s)	982
BsaI	GGTCTC	1 cut(s)	1037
BsaJI	CCNNGG	1 cut(s)	772
Bsc4I	CCNNNNNNNGG	1 cut(s)	752
Bse1I	ACTGG	1 cut(s)	977
Bse3DI	GCAATG	1 cut(s)	747
BseBI	CCWGG	2 cut(s)	410, 773
BseDI	CCNNGG	1 cut(s)	772
BseGI	GGATG	4 cut(s)	149, 337, 374, 831
BseLI	CCNNNNNNNGG	1 cut(s)	752
BseMI	GCAATG	1 cut(s)	747
BseMII	CTCAG	3 cut(s)	471, 510, 846
BseNI	ACTGG	1 cut(s)	977
BseXI	GCAGC	6 cut(s)	226, 284, 520, 654, 809, 1047
BsgI	GTGCAG	1 cut(s)	233
Bsh1236I	CGCG	3 cut(s)	100, 670, 925
BshFI	GGCC	1 cut(s)	203
BsiHKAI	GWGCWC	1 cut(s)	253
BslFI	GGGAC	2 cut(s)	49, 607
BslI	CCNNNNNNNGG	1 cut(s)	752
BsmAI	GTCTC	2 cut(s)	816, 1037
BsmFI	GGGAC	2 cut(s)	49, 607
BsnI	GGCC	1 cut(s)	203
Bso31I	GGTCTC	1 cut(s)	1037
Bsp1286I	GDGCHC	1 cut(s)	253
Bsp1407I	TGTACA	1 cut(s)	164
Bsp143I	GATC	3 cut(s)	461, 760, 776
Bsp1720I	GCTNAGC	1 cut(s)	480
Bsp68I	TCGCGA	1 cut(s)	670
BspACI	CCGC	3 cut(s)	100, 838, 923
BspANI	GGCC	1 cut(s)	203
BspCNI	CTCAG	3 cut(s)	472, 509, 847
BspFNI	CGCG	3 cut(s)	100, 670, 925
BspLI	GGNNCC	1 cut(s)	920
BspPI	GGATC	2 cut(s)	469, 784
BspTNI	GGTCTC	1 cut(s)	1037
BsrDI	GCAATG	1 cut(s)	747
BsrGI	TGTACA	1 cut(s)	164
BsrI	ACTGG	1 cut(s)	977
BssECI	CCNNGG	1 cut(s)	772
BssMI	GATC	3 cut(s)	461, 760, 776
BssSI	CACGAG	1 cut(s)	842
Bst2BI	CACGAG	1 cut(s)	842
Bst2UI	CCWGG	2 cut(s)	410, 773
Bst4CI	ACNGT	2 cut(s)	262, 558
Bst6I	CTCTTC	1 cut(s)	330
BstAUI	TGTACA	1 cut(s)	164
BstC8I	GCNNGC	1 cut(s)	754
BstDEI	CTNAG	3 cut(s)	480, 496, 855
BstF5I	GGATG	4 cut(s)	149, 337, 374, 831
BstFNI	CGCG	3 cut(s)	100, 670, 925
BstH2I	RGCGCY	1 cut(s)	287
BstHHI	GCGC	1 cut(s)	286
BstKTI	GATC	3 cut(s)	464, 763, 779
BstMAI	GTCTC	2 cut(s)	816, 1037
BstMBI	GATC	3 cut(s)	461, 760, 776
BstMWI	GCNNNNNNNGC	6 cut(s)	281, 476, 542, 551, 872, 881
BstNI	CCWGG	2 cut(s)	410, 773
BstNSI	RCATGY	3 cut(s)	488, 520, 605
BstSCI	CCNGG	2 cut(s)	408, 771
BstSFI	CTRYAG	2 cut(s)	111, 732
BstUI	CGCG	3 cut(s)	100, 670, 925
BstV1I	GCAGC	6 cut(s)	226, 284, 520, 654, 809, 1047
BstV2I	GAAGAC	2 cut(s)	233, 437
BstX2I	RGATCY	1 cut(s)	461
BstYI	RGATCY	1 cut(s)	461
BsuRI	GGCC	1 cut(s)	203
BtgZI	GCGATG	2 cut(s)	346, 771
BtsCI	GGATG	4 cut(s)	149, 337, 374, 831
BtsIMutI	CAGTG	2 cut(s)	316, 554
BtuMI	TCGCGA	1 cut(s)	670
Cac8I	GCNNGC	1 cut(s)	754
CfoI	GCGC	1 cut(s)	286
Cfr13I	GGNCC	1 cut(s)	202
CseI	GACGC	1 cut(s)	914
Csp6I	GTAC	1 cut(s)	165
CviAII	CATG	9 cut(s)	185, 199, 485, 517, 602, 611, 617, 1086, 1101
CviQI	GTAC	1 cut(s)	165
DdeI	CTNAG	3 cut(s)	480, 496, 855
DpnI	GATC	3 cut(s)	463, 762, 778
DpnII	GATC	3 cut(s)	461, 760, 776
Eam1104I	CTCTTC	1 cut(s)	330
EarI	CTCTTC	1 cut(s)	330
Eco31I	GGTCTC	1 cut(s)	1037
Eco32I	GATATC	1 cut(s)	629
EcoRI	GAATTC	1 cut(s)	305
EcoRII	CCWGG	2 cut(s)	408, 771
EcoRV	GATATC	1 cut(s)	629
FaeI	CATG	9 cut(s)	188, 202, 488, 520, 605, 614, 620, 1089, 1104
FalI	AAGNNNNNCTT	4 cut(s)	225, 257, 809, 841
FaqI	GGGAC	2 cut(s)	49, 607
FatI	CATG	9 cut(s)	184, 198, 484, 516, 601, 610, 616, 1085, 1100
FauI	CCCGC	1 cut(s)	930
FauNDI	CATATG	3 cut(s)	268, 700, 1019
FblI	GTMKAC	1 cut(s)	663
Fnu4HI	GCNGC	6 cut(s)	215, 273, 534, 643, 798, 1061
FokI	GGATG	4 cut(s)	136, 344, 381, 818
Fsp4HI	GCNGC	6 cut(s)	215, 273, 534, 643, 798, 1061
FspBI	CTAG	7 cut(s)	26, 90, 458, 522, 791, 903, 915
GlaI	GCGC	1 cut(s)	285
GluI	GCNGC	6 cut(s)	215, 273, 534, 643, 798, 1061
GsuI	CTGGAG	2 cut(s)	1017, 1023
HaeII	RGCGCY	1 cut(s)	287
HaeIII	GGCC	1 cut(s)	203
HgaI	GACGC	1 cut(s)	914
HhaI	GCGC	1 cut(s)	286
Hin1II	CATG	9 cut(s)	188, 202, 488, 520, 605, 614, 620, 1089, 1104
Hin6I	GCGC	1 cut(s)	284
HinP1I	GCGC	1 cut(s)	284
HincII	GTYRAC	1 cut(s)	406
HindII	GTYRAC	1 cut(s)	406
HinfI	GANTC	5 cut(s)	57, 86, 93, 494, 595
HpaI	GTTAAC	1 cut(s)	406
Hpy166II	GTNNAC	2 cut(s)	406, 664
Hpy188I	TCNGA	5 cut(s)	121, 142, 781, 856, 1076
Hpy188III	TCNNGA	5 cut(s)	90, 632, 669, 999, 1040
Hpy8I	GTNNAC	2 cut(s)	406, 664
HpyAV	CCTTC	4 cut(s)	25, 59, 779, 1092
HpyCH4III	ACNGT	2 cut(s)	262, 558
HpyCH4IV	ACGT	2 cut(s)	238, 713
HpyCH4V	TGCA	8 cut(s)	214, 257, 272, 616, 911, 931, 1012, 1100
HpyF10VI	GCNNNNNNNGC	6 cut(s)	281, 476, 542, 551, 872, 881
HpyF3I	CTNAG	3 cut(s)	480, 496, 855
HpySE526I	ACGT	2 cut(s)	238, 713
Hsp92II	CATG	9 cut(s)	188, 202, 488, 520, 605, 614, 620, 1089, 1104
HspAI	GCGC	1 cut(s)	284
KspAI	GTTAAC	1 cut(s)	406
Kzo9I	GATC	3 cut(s)	461, 760, 776
LmnI	GCTCC	2 cut(s)	256, 1042
Lsp1109I	GCAGC	6 cut(s)	226, 284, 520, 654, 809, 1047
LweI	GCATC	3 cut(s)	520, 640, 920
MaeI	CTAG	7 cut(s)	26, 90, 458, 522, 791, 903, 915
MaeII	ACGT	2 cut(s)	238, 713
MaeIII	GTNAC	1 cut(s)	311
MalI	GATC	3 cut(s)	463, 762, 778
MboI	GATC	3 cut(s)	461, 760, 776
MboII	GAAGA	5 cut(s)	233, 245, 347, 442, 539
MflI	RGATCY	1 cut(s)	461
MhlI	GDGCHC	1 cut(s)	253
MluCI	AATT	6 cut(s)	305, 473, 934, 950, 1004, 1025
MlyI	GAGTC	2 cut(s)	488, 589
MmeI	TCCRAC	1 cut(s)	177
MnlI	CCTC	8 cut(s)	322, 331, 584, 656, 851, 856, 899, 1041
MroXI	GAANNNNTTC	1 cut(s)	240
MseI	TTAA	5 cut(s)	344, 405, 501, 828, 953
MslI	CAYNNNNRTG	2 cut(s)	615, 621
MspR9I	CCNGG	2 cut(s)	410, 773
MvaI	CCWGG	2 cut(s)	410, 773
MvnI	CGCG	3 cut(s)	100, 670, 925
MwoI	GCNNNNNNNGC	6 cut(s)	281, 476, 542, 551, 872, 881
NdeI	CATATG	3 cut(s)	268, 700, 1019
NdeII	GATC	3 cut(s)	461, 760, 776
NlaIII	CATG	9 cut(s)	188, 202, 488, 520, 605, 614, 620, 1089, 1104
NlaIV	GGNNCC	1 cut(s)	920
NmuCI	GTSAC	1 cut(s)	311
NruI	TCGCGA	1 cut(s)	670
NspI	RCATGY	3 cut(s)	488, 520, 605
PciI	ACATGT	2 cut(s)	516, 601
PdmI	GAANNNNTTC	1 cut(s)	240
PfeI	GAWTC	3 cut(s)	57, 86, 93
PkrI	GCNGC	6 cut(s)	216, 274, 535, 644, 799, 1062
PleI	GAGTC	2 cut(s)	488, 589
PpsI	GAGTC	2 cut(s)	488, 589
PscI	ACATGT	2 cut(s)	516, 601
PsiI	TTATAA	1 cut(s)	399
Psp6I	CCWGG	2 cut(s)	408, 771
PspGI	CCWGG	2 cut(s)	408, 771
PspN4I	GGNNCC	1 cut(s)	920
PspPI	GGNCC	1 cut(s)	202
PsuI	RGATCY	1 cut(s)	461
RruI	TCGCGA	1 cut(s)	670
RsaI	GTAC	1 cut(s)	166
RsaNI	GTAC	1 cut(s)	165
RseI	CAYNNNNRTG	2 cut(s)	615, 621
SaqAI	TTAA	5 cut(s)	344, 405, 501, 828, 953
SatI	GCNGC	6 cut(s)	215, 273, 534, 643, 798, 1061
Sau3AI	GATC	3 cut(s)	461, 760, 776
Sau96I	GGNCC	1 cut(s)	202
SchI	GAGTC	2 cut(s)	488, 589
ScrFI	CCNGG	2 cut(s)	410, 773
SduI	GDGCHC	1 cut(s)	253
SfaNI	GCATC	3 cut(s)	520, 640, 920
SfcI	CTRYAG	2 cut(s)	111, 732
SmiMI	CAYNNNNRTG	2 cut(s)	615, 621
SmlI	CTYRAG	1 cut(s)	997
SmoI	CTYRAG	1 cut(s)	997
Sse9I	AATT	6 cut(s)	305, 473, 934, 950, 1004, 1025
SsiI	CCGC	3 cut(s)	100, 838, 923
SspI	AATATT	1 cut(s)	348
SspMI	CTAG	7 cut(s)	26, 90, 458, 522, 791, 903, 915
StyD4I	CCNGG	2 cut(s)	408, 771
TaaI	ACNGT	2 cut(s)	262, 558
TaiI	ACGT	2 cut(s)	241, 716
TaqI	TCGA	2 cut(s)	55, 648
TasI	AATT	6 cut(s)	305, 473, 934, 950, 1004, 1025
TatI	WGTACW	1 cut(s)	164
TfiI	GAWTC	3 cut(s)	57, 86, 93
Tru1I	TTAA	5 cut(s)	344, 405, 501, 828, 953
Tru9I	TTAA	5 cut(s)	344, 405, 501, 828, 953
TscAI	CASTG	2 cut(s)	316, 561
TseFI	GTSAC	1 cut(s)	311
TseI	GCWGC	6 cut(s)	214, 272, 533, 642, 797, 1060
Tsp45I	GTSAC	1 cut(s)	311
TspDTI	ATGAA	9 cut(s)	173, 255, 318, 333, 348, 633, 717, 798, 1074
TspRI	CASTG	2 cut(s)	316, 561
XapI	RAATTY	3 cut(s)	305, 473, 934
XbaI	TCTAGA	1 cut(s)	89
XceI	RCATGY	3 cut(s)	488, 520, 605
XcmI	CCANNNNNNNNNTGG	1 cut(s)	749
XmiI	GTMKAC	1 cut(s)	663
XmnI	GAANNNNTTC	1 cut(s)	240
XspI	CTAG	7 cut(s)	26, 90, 458, 522, 791, 903, 915

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.