Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000613

Physical Location & Seq

Genomic Coordinates Reverse (-)

1927112 .. 1931100

Gene Structure 3989 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG026900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGAACCTAGGAAAAACCCTAGACCACAGACCAGCCGCCATCCGCCCCACACCATCTGCCGCGCCTTCGACGACCATCCCACCACCGCCAACGTTAACAAAGCAAGGTCTGACTACCGCTCAGTGCAAAACCAACAAGCTGCAGCAACCTTCTCCTAGCCTAAGCTGTGTGACCATCCTAATCGAGCTCGATCGCGCCACCATCCTTCCAACCCGTATTGACAGGTCACGACCAACCTTATTAGCAGCCCACCTTGTAGCCCGTTGTGTATTGGGAGACGATCGCTTCTACTTCCACCGCCTGGTGTTCGAGTCTAAACTGGAGGCAGTAAGGGCATATGACAAGACAAGTGCTCATGGTCGAACTAGTCCCTCGTATCTAGAATGGTTTCCAAATCAAGCGGTCTTGGAAAATAAGCCGAGTGTTACAGTTTATGTGGAATGGAGCTCAAAGGGTTTGCTAGAATTCATTCACAATGAATGTCAAGTAACGTATGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

166

Amino Acids

18.53

Weight (kDa)

9.16

Isoelectric Point (pI)

50.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000613)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13060 AT1G13060 AT1G13060 AT3G26340
fragaria_vesca	FvH4_1g01201 FvH4_4g24020 FvH4_6g30500
malus_domestica	MD10G1030600.v1.1 MD16G1116800.v1.1
prunus_persica	Prupe.1G229300_v2.0.a1 Prupe.1G229300_v2.0.a1 Prupe.1G229300_v2.0.a1
pyrus_communis	pycom10g01980 pycom13g10110
rosa_chinensis	RchiOBHm_Chr4g0430701 RchiOBHm_Chr5g0003071
rosa_laevigata	RLG00000006954 RLG00000031090 RLG00000031094 RLG00000031099 RLG00000031107 RLG00000031108 RLG00000031111 RLG00000031116 RLG00000032188
rosa_multiflora	Rmu_sc0000131.1_g000009 Rmu_sc0000146.1_g000015 Rmu_sc0002209.1_g000027
rosa_roxburghii	Rroxscaffold_1G00061170 Rroxscaffold_1G00061240 Rroxscaffold_1G00061300 Rroxscaffold_1G00072510 Rroxscaffold_1G00072750 Rroxscaffold_1G00072760 Rroxscaffold_5G00372440 Rroxscaffold_6G00429800 Rroxscaffold_6G00429810 Rroxscaffold_6G00429820 Rroxscaffold_6G00429850
rosa_rugosa	Rorug04G0245300 Rorug04G0402100 Rorug04G0402100 Rorug04G0402100 Rorug05G0025600 Rorug05G0026200
rosa_samantha	Rh3BG233200 Rh3DG047000 Rh3DG047300 Rh3DG047400 Rh3DG047800 Rh4AG053100 Rh4AG227500 Rh4BG230300 Rh4BG309300 Rh4CG242400 Rh4DG160600 Rh4DG225800 Rh5AG024300 Rh5AG024400 Rh5AG024700 Rh5AG027100 Rh5AG119900 Rh5BG118400 Rh5CG027100 Rh5CG027300 Rh5CG027700 Rh5CG128900 Rh5DG026900 Rh5DG027000 Rh5DG027700 Rh5DG028000 Rh5DG028500
rosa_wichuraiana	Rw0G010900 Rw3G003590 Rw4G026180 Rw5G002310 Rw5G002480 Rw5G002600 Rw5G010340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	301
AccBSI	CCGCTC	1 cut(s)	119
AccII	CGCG	2 cut(s)	62, 195
AciI	CCGC	7 cut(s)	36, 43, 60, 86, 117, 298, 401
AclI	AACGTT	1 cut(s)	92
AcsI	RAATTY	1 cut(s)	464
AfiI	CCNNNNNNNGG	1 cut(s)	301
AhlI	ACTAGT	1 cut(s)	365
AjnI	CCWGG	1 cut(s)	300
AluBI	AGCT	4 cut(s)	139, 165, 187, 447
AluI	AGCT	4 cut(s)	139, 165, 187, 447
Alw21I	GWGCWC	3 cut(s)	189, 355, 449
Alw26I	GTCTC	1 cut(s)	270
ApeKI	GCWGC	3 cut(s)	139, 142, 245
ApoI	RAATTY	1 cut(s)	464
Asp700I	GAANNNNTTC	2 cut(s)	387, 468
AspA2I	CCTAGG	1 cut(s)	7
AspLEI	GCGC	2 cut(s)	64, 197
AvrII	CCTAGG	1 cut(s)	7
BanII	GRGCYC	2 cut(s)	189, 449
Bbv12I	GWGCWC	3 cut(s)	189, 355, 449
BbvI	GCAGC	3 cut(s)	126, 154, 257
BccI	CCATC	5 cut(s)	47, 61, 83, 182, 209
BciT130I	CCWGG	1 cut(s)	302
BcoDI	GTCTC	1 cut(s)	270
BcuI	ACTAGT	1 cut(s)	365
BfaI	CTAG	6 cut(s)	8, 20, 156, 366, 380, 461
BfmI	CTRYAG	1 cut(s)	140
BisI	GCNGC	5 cut(s)	36, 60, 140, 143, 246
BlnI	CCTAGG	1 cut(s)	7
BlsI	GCNGC	5 cut(s)	37, 61, 141, 144, 247
Bme1390I	CCNGG	1 cut(s)	302
BmrFI	CCNGG	1 cut(s)	302
BpmI	CTGGAG	1 cut(s)	341
Bpu10I	CCTNAGC	1 cut(s)	161
BsaJI	CCNNGG	1 cut(s)	7
Bsc4I	CCNNNNNNNGG	1 cut(s)	301
Bse1I	ACTGG	1 cut(s)	324
BseBI	CCWGG	1 cut(s)	302
BseDI	CCNNGG	1 cut(s)	7
BseGI	GGATG	4 cut(s)	39, 75, 174, 201
BseLI	CCNNNNNNNGG	1 cut(s)	301
BseMII	CTCAG	1 cut(s)	134
BseNI	ACTGG	1 cut(s)	324
BseXI	GCAGC	3 cut(s)	126, 154, 257
Bsh1236I	CGCG	2 cut(s)	62, 195
Bsh1285I	CGRYCG	2 cut(s)	193, 283
BsiEI	CGRYCG	2 cut(s)	193, 283
BsiHKAI	GWGCWC	3 cut(s)	189, 355, 449
BslFI	GGGAC	1 cut(s)	354
BslI	CCNNNNNNNGG	1 cut(s)	301
BsmAI	GTCTC	1 cut(s)	270
BsmBI	CGTCTC	1 cut(s)	270
BsmFI	GGGAC	1 cut(s)	354
Bsp1286I	GDGCHC	3 cut(s)	189, 355, 449
Bsp143I	GATC	2 cut(s)	190, 280
BspACI	CCGC	7 cut(s)	36, 43, 60, 86, 117, 298, 401
BspCNI	CTCAG	1 cut(s)	133
BspFNI	CGCG	2 cut(s)	62, 195
BspMAI	CTGCAG	1 cut(s)	144
BsrBI	CCGCTC	1 cut(s)	119
BsrI	ACTGG	1 cut(s)	324
BssECI	CCNNGG	1 cut(s)	7
BssMI	GATC	2 cut(s)	190, 280
BssT1I	CCWWGG	1 cut(s)	7
Bst2UI	CCWGG	1 cut(s)	302
Bst4CI	ACNGT	1 cut(s)	430
BstDEI	CTNAG	2 cut(s)	120, 161
BstF5I	GGATG	4 cut(s)	39, 75, 174, 201
BstFNI	CGCG	2 cut(s)	62, 195
BstHHI	GCGC	2 cut(s)	64, 197
BstKTI	GATC	2 cut(s)	193, 283
BstMAI	GTCTC	1 cut(s)	270
BstMBI	GATC	2 cut(s)	190, 280
BstMCI	CGRYCG	2 cut(s)	193, 283
BstMWI	GCNNNNNNNGC	1 cut(s)	332
BstNI	CCWGG	1 cut(s)	302
BstSCI	CCNGG	1 cut(s)	300
BstSFI	CTRYAG	1 cut(s)	140
BstUI	CGCG	2 cut(s)	62, 195
BstV1I	GCAGC	3 cut(s)	126, 154, 257
BtsCI	GGATG	4 cut(s)	39, 75, 174, 201
BtsIMutI	CAGTG	1 cut(s)	128
CfoI	GCGC	2 cut(s)	64, 197
CviAII	CATG	1 cut(s)	356
CviJI	RGCY	9 cut(s)	35, 139, 159, 165, 187, 248, 260, 418, 447
CviKI_1	RGCY	9 cut(s)	35, 139, 159, 165, 187, 248, 260, 418, 447
DdeI	CTNAG	2 cut(s)	120, 161
DpnI	GATC	2 cut(s)	192, 282
DpnII	GATC	2 cut(s)	190, 280
EciI	GGCGGA	1 cut(s)	32
Ecl136II	GAGCTC	2 cut(s)	187, 447
Eco130I	CCWWGG	1 cut(s)	7
Eco24I	GRGCYC	2 cut(s)	189, 449
Eco53kI	GAGCTC	2 cut(s)	187, 447
EcoICRI	GAGCTC	2 cut(s)	187, 447
EcoRI	GAATTC	1 cut(s)	464
EcoRII	CCWGG	1 cut(s)	300
EcoT14I	CCWWGG	1 cut(s)	7
EcoT38I	GRGCYC	2 cut(s)	189, 449
ErhI	CCWWGG	1 cut(s)	7
Esp3I	CGTCTC	1 cut(s)	270
FaeI	CATG	1 cut(s)	359
FaiI	YATR	6 cut(s)	337, 339, 357, 435, 495, 499
FaqI	GGGAC	1 cut(s)	354
FatI	CATG	1 cut(s)	355
FauNDI	CATATG	1 cut(s)	337
Fnu4HI	GCNGC	5 cut(s)	36, 60, 140, 143, 246
FokI	GGATG	4 cut(s)	26, 62, 161, 188
FriOI	GRGCYC	2 cut(s)	189, 449
Fsp4HI	GCNGC	5 cut(s)	36, 60, 140, 143, 246
FspBI	CTAG	6 cut(s)	8, 20, 156, 366, 380, 461
GlaI	GCGC	2 cut(s)	63, 196
GluI	GCNGC	5 cut(s)	36, 60, 140, 143, 246
GsuI	CTGGAG	1 cut(s)	341
HhaI	GCGC	2 cut(s)	64, 197
Hin1II	CATG	1 cut(s)	359
Hin6I	GCGC	2 cut(s)	62, 195
HinP1I	GCGC	2 cut(s)	62, 195
HincII	GTYRAC	1 cut(s)	96
HindII	GTYRAC	1 cut(s)	96
HinfI	GANTC	1 cut(s)	311
HpaI	GTTAAC	1 cut(s)	96
Hpy166II	GTNNAC	1 cut(s)	96
Hpy188I	TCNGA	1 cut(s)	111
Hpy188III	TCNNGA	2 cut(s)	228, 380
Hpy8I	GTNNAC	1 cut(s)	96
Hpy99I	CGWCG	1 cut(s)	73
HpyAV	CCTTC	3 cut(s)	75, 159, 215
HpyCH4III	ACNGT	1 cut(s)	430
HpyCH4IV	ACGT	2 cut(s)	92, 491
HpyCH4V	TGCA	2 cut(s)	126, 142
HpyF10VI	GCNNNNNNNGC	1 cut(s)	332
HpyF3I	CTNAG	2 cut(s)	120, 161
HpySE526I	ACGT	2 cut(s)	92, 491
Hsp92II	CATG	1 cut(s)	359
HspAI	GCGC	2 cut(s)	62, 195
KspAI	GTTAAC	1 cut(s)	96
Kzo9I	GATC	2 cut(s)	190, 280
LmnI	GCTCC	1 cut(s)	444
LpnPI	CCDG	5 cut(s)	45, 208, 287, 305, 314
Lsp1109I	GCAGC	3 cut(s)	126, 154, 257
MaeI	CTAG	6 cut(s)	8, 20, 156, 366, 380, 461
MaeII	ACGT	2 cut(s)	92, 491
MaeIII	GTNAC	4 cut(s)	169, 225, 424, 487
MalI	GATC	2 cut(s)	192, 282
MbiI	CCGCTC	1 cut(s)	119
MboI	GATC	2 cut(s)	190, 280
MhlI	GDGCHC	3 cut(s)	189, 355, 449
MluCI	AATT	1 cut(s)	464
MlyI	GAGTC	1 cut(s)	320
MmeI	TCCRAC	1 cut(s)	233
MnlI	CCTC	2 cut(s)	316, 382
MroXI	GAANNNNTTC	2 cut(s)	387, 468
MseI	TTAA	1 cut(s)	95
MspR9I	CCNGG	1 cut(s)	302
MvaI	CCWGG	1 cut(s)	302
MvnI	CGCG	2 cut(s)	62, 195
MwoI	GCNNNNNNNGC	1 cut(s)	332
NdeI	CATATG	1 cut(s)	337
NdeII	GATC	2 cut(s)	190, 280
NlaIII	CATG	1 cut(s)	359
NmeAIII	GCCGAG	1 cut(s)	444
NmuCI	GTSAC	2 cut(s)	169, 225
PdmI	GAANNNNTTC	2 cut(s)	387, 468
PflMI	CCANNNNNTGG	1 cut(s)	301
PkrI	GCNGC	5 cut(s)	37, 61, 141, 144, 247
Ple19I	CGATCG	2 cut(s)	193, 283
PleI	GAGTC	1 cut(s)	319
PpsI	GAGTC	1 cut(s)	319
Psp124BI	GAGCTC	2 cut(s)	189, 449
Psp1406I	AACGTT	1 cut(s)	92
Psp6I	CCWGG	1 cut(s)	300
PspGI	CCWGG	1 cut(s)	300
PstI	CTGCAG	1 cut(s)	144
PvuI	CGATCG	2 cut(s)	193, 283
SacI	GAGCTC	2 cut(s)	189, 449
SaqAI	TTAA	1 cut(s)	95
SatI	GCNGC	5 cut(s)	36, 60, 140, 143, 246
Sau3AI	GATC	2 cut(s)	190, 280
SchI	GAGTC	1 cut(s)	320
ScrFI	CCNGG	1 cut(s)	302
SduI	GDGCHC	3 cut(s)	189, 355, 449
SfcI	CTRYAG	1 cut(s)	140
SpeI	ACTAGT	1 cut(s)	365
Sse9I	AATT	1 cut(s)	464
SsiI	CCGC	7 cut(s)	36, 43, 60, 86, 117, 298, 401
SspMI	CTAG	6 cut(s)	8, 20, 156, 366, 380, 461
SstI	GAGCTC	2 cut(s)	189, 449
StyD4I	CCNGG	1 cut(s)	300
StyI	CCWWGG	1 cut(s)	7
TaaI	ACNGT	1 cut(s)	430
TaiI	ACGT	2 cut(s)	95, 494
TaqI	TCGA	5 cut(s)	68, 183, 189, 309, 361
TasI	AATT	1 cut(s)	464
TauI	GCSGC	2 cut(s)	38, 62
Tru1I	TTAA	1 cut(s)	95
Tru9I	TTAA	1 cut(s)	95
TscAI	CASTG	1 cut(s)	128
TseFI	GTSAC	2 cut(s)	169, 225
TseI	GCWGC	3 cut(s)	139, 142, 245
Tsp45I	GTSAC	2 cut(s)	169, 225
TspDTI	ATGAA	3 cut(s)	17, 457, 492
TspRI	CASTG	1 cut(s)	128
Van91I	CCANNNNNTGG	1 cut(s)	301
XapI	RAATTY	1 cut(s)	464
XbaI	TCTAGA	1 cut(s)	379
XmaJI	CCTAGG	1 cut(s)	7
XmnI	GAANNNNTTC	2 cut(s)	387, 468
XspI	CTAG	6 cut(s)	8, 20, 156, 366, 380, 461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.