RLG00000031111

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000613
Physical Location & Seq
Reverse (-)
2213771 .. 2215403
1633 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031111

Sequence Viewer

Length: 1053 bp
ATGGGTTGCATGGTTTCAAAACACTCTTCGAACTTGTCGCTCAAGGGGACAACCGCTCTTGCTTTTTTCCACAAAGAGGGCATTGTAGTTGCAGTTGACTCCAGGGCTTCCAACGAAGAGGATAAGCTTGAAAAAGAGCTTGAGATTGTAGACGACGAAGTCAAAATGCATCCAATATCTGCTAAAATAATTTCCTTACTTGTGGGGGGACGTAATGACTGTCGAGTGTTGGGCTTTCATATACAAAAGGAGTTTCCATACTGGGATGCATATGCTGGCAATGAACCTAGAGTTTCAGATGTAGCAGAAACAATTTATAAGTATTTAAATGGTCTTCGTGGCGAGAATAAAAGGTTTGGAATCCTCGTCGCGGGATGGGATGCAGAGGGTCACGATCGAATTTATCGTCTGTTTATCAGAGATGATGTTGTTGTGAAACAAAAAGTAACTTCCTCACGATCTGGAGTACTAGGATCTGGGCATGTCTATGCTGCTACTAGTCTTAAAAATGAGAACCGGTGTTACAACTACGACATGTCCACCGACGATGGTACTAAATTGGTGCTAGAAGCATTATTTAATGCAACCGTCCATGATAAGTCCAGTGGTGGACTTTTGCGAGTTTTTCACGTGGATAAATTTGGATGGCGCCCCGAAACTATCCAAGATCCTTTAGAAGCCTACTCAATGTATTACGAACATTATGAAGAAGAGAAAACGCTTTTCTTAGTTGTTTCTTCTCCTTCAGAAATCCCCCCTATTCCTGCCCAGAAGTTTATACGACACTTCTGGCAGAAAGATATTACGGTAACAGCAGCCCATTGTGTAGCCCATCGTGTATTGAAGGAGCAGCATCGTCTAGCCAATGGTGTCTTGGAGAAGCAGCGGTTATCCTTCCACCGCCTTATATTCAACTATGGAGTTGAGGCTTCAAATGCATATGCACTCACAGCTACTCATGGTGAAACTAATTCTCAACTTGTAGAAAAGTTAATTGTTGAAAACTGCGTTTCAAAAAAAATTGTTGTTGAAAACTGTGGAGCCAAGTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03050 map03050
Pfam Domains
Protein Families
Proteasome

Protein Analysis

351

Amino Acids

39.46

Weight (kDa)

6.57

Isoelectric Point (pI)

31.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Proteasome PF00227 15 - 210 4.3e-17 Proteasome subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 318
AasI GACNNNNNNGTC 1 cut(s) 158
AccB1I GGYRCC 1 cut(s) 648
AccBSI CCGCTC 1 cut(s) 56
AccI GTMKAC 1 cut(s) 150
AccII CGCG 1 cut(s) 371
AciI CCGC 4 cut(s) 54, 371, 886, 901
AclWI GGATC 2 cut(s) 481, 662
AcsI RAATTY 2 cut(s) 399, 638
AcuI CTGAAG 1 cut(s) 729
AcvI CACGTG 1 cut(s) 631
AcyI GRCGYC 1 cut(s) 649
AfaI GTAC 2 cut(s) 468, 553
AfiI CCNNNNNNNGG 2 cut(s) 76, 370
AflIII ACRYGT 1 cut(s) 534
AgeI ACCGGT 1 cut(s) 516
AgsI TTSAA 8 cut(s) 18, 131, 844, 913, 933, 1001, 1014, 1031
AhlI ACTAGT 1 cut(s) 497
AjnI CCWGG 1 cut(s) 101
AluBI AGCT 3 cut(s) 127, 139, 953
AluI AGCT 3 cut(s) 127, 139, 953
AlwI GGATC 2 cut(s) 481, 662
ApeKI GCWGC 4 cut(s) 491, 815, 850, 883
ApoI RAATTY 2 cut(s) 399, 638
ArsI GACNNNNNNTTYG 2 cut(s) 391, 423
AsiGI ACCGGT 1 cut(s) 516
AspLEI GCGC 1 cut(s) 651
AsuHPI GGTGA 1 cut(s) 974
AsuII TTCGAA 1 cut(s) 29
BanI GGYRCC 1 cut(s) 648
BbrPI CACGTG 1 cut(s) 631
BbsI GAAGAC 1 cut(s) 326
BbvI GCAGC 4 cut(s) 478, 827, 862, 895
BccI CCATC 4 cut(s) 369, 542, 639, 840
BciT130I CCWGG 1 cut(s) 103
BcuI ACTAGT 1 cut(s) 497
BfaI CTAG 5 cut(s) 288, 470, 498, 566, 860
BfoI RGCGCY 1 cut(s) 652
BisI GCNGC 4 cut(s) 492, 816, 851, 884
BlsI GCNGC 4 cut(s) 493, 817, 852, 885
BmcAI AGTACT 1 cut(s) 468
Bme1390I CCNGG 1 cut(s) 103
BmiI GGNNCC 2 cut(s) 650, 1042
BmrFI CCNGG 1 cut(s) 103
BmrI ACTGGG 1 cut(s) 271
BmsI GCATC 4 cut(s) 178, 256, 370, 862
BmuI ACTGGG 1 cut(s) 271
BpiI GAAGAC 1 cut(s) 326
BpmI CTGGAG 2 cut(s) 85, 483
Bpu14I TTCGAA 1 cut(s) 29
BpuEI CTTGAG 2 cut(s) 26, 161
BsaAI YACGTR 1 cut(s) 631
BsaHI GRCGYC 1 cut(s) 649
BsaJI CCNNGG 1 cut(s) 102
BsaWI WCCGGW 1 cut(s) 516
Bsc4I CCNNNNNNNGG 2 cut(s) 76, 370
Bse118I RCCGGY 1 cut(s) 516
Bse1I ACTGG 2 cut(s) 266, 603
Bse3DI GCAATG 1 cut(s) 286
BseBI CCWGG 1 cut(s) 103
BseDI CCNNGG 1 cut(s) 102
BseGI GGATG 5 cut(s) 169, 271, 380, 385, 650
BseLI CCNNNNNNNGG 2 cut(s) 76, 370
BseMI GCAATG 1 cut(s) 286
BseNI ACTGG 2 cut(s) 266, 603
BseXI GCAGC 4 cut(s) 478, 827, 862, 895
Bsh1236I CGCG 1 cut(s) 371
Bsh1285I CGRYCG 1 cut(s) 397
BshNI GGYRCC 1 cut(s) 648
BshTI ACCGGT 1 cut(s) 516
BsiEI CGRYCG 1 cut(s) 397
BsiSI CCGG 1 cut(s) 517
BslFI GGGAC 2 cut(s) 61, 222
BslI CCNNNNNNNGG 2 cut(s) 76, 370
BsmFI GGGAC 2 cut(s) 61, 222
Bsp119I TTCGAA 1 cut(s) 29
Bsp143I GATC 4 cut(s) 394, 458, 473, 667
BspACI CCGC 4 cut(s) 54, 371, 886, 901
BspFNI CGCG 1 cut(s) 371
BspLI GGNNCC 2 cut(s) 650, 1042
BspPI GGATC 2 cut(s) 481, 662
BspT104I TTCGAA 1 cut(s) 29
BspT107I GGYRCC 1 cut(s) 648
BsrBI CCGCTC 1 cut(s) 56
BsrDI GCAATG 1 cut(s) 286
BsrFI RCCGGY 1 cut(s) 516
BsrI ACTGG 2 cut(s) 266, 603
BssAI RCCGGY 1 cut(s) 516
BssECI CCNNGG 1 cut(s) 102
BssMI GATC 4 cut(s) 394, 458, 473, 667
BssNI GRCGYC 1 cut(s) 649
Bst2UI CCWGG 1 cut(s) 103
Bst4CI ACNGT 4 cut(s) 221, 589, 808, 1037
Bst6I CTCTTC 3 cut(s) 31, 111, 705
BstACI GRCGYC 1 cut(s) 649
BstBAI YACGTR 1 cut(s) 631
BstBI TTCGAA 1 cut(s) 29
BstC8I GCNNGC 1 cut(s) 277
BstDEI CTNAG 1 cut(s) 727
BstF5I GGATG 5 cut(s) 169, 271, 380, 385, 650
BstFNI CGCG 1 cut(s) 371
BstH2I RGCGCY 1 cut(s) 652
BstHHI GCGC 1 cut(s) 651
BstKTI GATC 4 cut(s) 397, 461, 476, 670
BstMBI GATC 4 cut(s) 394, 458, 473, 667
BstMCI CGRYCG 1 cut(s) 397
BstMWI GCNNNNNNNGC 2 cut(s) 935, 950
BstNI CCWGG 1 cut(s) 103
BstNSI RCATGY 2 cut(s) 485, 538
BstSCI CCNGG 1 cut(s) 101
BstUI CGCG 1 cut(s) 371
BstV1I GCAGC 4 cut(s) 478, 827, 862, 895
BstV2I GAAGAC 1 cut(s) 326
BstX2I RGATCY 2 cut(s) 473, 667
BstYI RGATCY 2 cut(s) 473, 667
BtsCI GGATG 5 cut(s) 169, 271, 380, 385, 650
BtsIMutI CAGTG 1 cut(s) 610
Cac8I GCNNGC 1 cut(s) 277
CfoI GCGC 1 cut(s) 651
Cfr10I RCCGGY 1 cut(s) 516
Csp6I GTAC 2 cut(s) 467, 552
CspAI ACCGGT 1 cut(s) 516
CviAII CATG 5 cut(s) 10, 482, 535, 593, 959
CviQI GTAC 2 cut(s) 467, 552
DdeI CTNAG 1 cut(s) 727
DinI GGCGCC 1 cut(s) 650
DpnI GATC 4 cut(s) 396, 460, 475, 669
DpnII GATC 4 cut(s) 394, 458, 473, 667
DraI TTTAAA 1 cut(s) 327
DrdI GACNNNNNNGTC 1 cut(s) 158
DseDI GACNNNNNNGTC 1 cut(s) 158
Eam1104I CTCTTC 3 cut(s) 31, 111, 705
EarI CTCTTC 3 cut(s) 31, 111, 705
Eco57I CTGAAG 1 cut(s) 729
Eco72I CACGTG 1 cut(s) 631
EcoRII CCWGG 1 cut(s) 101
EcoT22I ATGCAT 3 cut(s) 171, 271, 940
EgeI GGCGCC 1 cut(s) 650
EheI GGCGCC 1 cut(s) 650
FaeI CATG 5 cut(s) 13, 485, 538, 596, 962
FaqI GGGAC 2 cut(s) 61, 222
FatI CATG 5 cut(s) 9, 481, 534, 592, 958
FauI CCCGC 1 cut(s) 364
FauNDI CATATG 2 cut(s) 271, 940
FblI GTMKAC 1 cut(s) 150
Fnu4HI GCNGC 4 cut(s) 492, 816, 851, 884
FokI GGATG 5 cut(s) 156, 278, 387, 392, 657
Fsp4HI GCNGC 4 cut(s) 492, 816, 851, 884
FspBI CTAG 5 cut(s) 288, 470, 498, 566, 860
GlaI GCGC 1 cut(s) 650
GluI GCNGC 4 cut(s) 492, 816, 851, 884
GsuI CTGGAG 2 cut(s) 85, 483
HaeII RGCGCY 1 cut(s) 652
HapII CCGG 1 cut(s) 517
HhaI GCGC 1 cut(s) 651
Hin1I GRCGYC 1 cut(s) 649
Hin1II CATG 5 cut(s) 13, 485, 538, 596, 962
Hin6I GCGC 1 cut(s) 649
HinP1I GCGC 1 cut(s) 649
HincII GTYRAC 1 cut(s) 97
HindII GTYRAC 1 cut(s) 97
HindIII AAGCTT 1 cut(s) 125
HinfI GANTC 2 cut(s) 98, 360
HpaII CCGG 1 cut(s) 517
HphI GGTGA 1 cut(s) 974
Hpy166II GTNNAC 4 cut(s) 97, 151, 540, 611
Hpy188I TCNGA 3 cut(s) 298, 419, 748
Hpy188III TCNNGA 3 cut(s) 392, 456, 462
Hpy8I GTNNAC 4 cut(s) 97, 151, 540, 611
Hpy99I CGWCG 3 cut(s) 158, 371, 548
HpyAV CCTTC 3 cut(s) 753, 838, 904
HpyCH4III ACNGT 4 cut(s) 221, 589, 808, 1037
HpyCH4IV ACGT 2 cut(s) 211, 630
HpyCH4V TGCA 8 cut(s) 9, 92, 169, 269, 383, 584, 938, 944
HpyF10VI GCNNNNNNNGC 2 cut(s) 935, 950
HpyF3I CTNAG 1 cut(s) 727
HpySE526I ACGT 2 cut(s) 211, 630
Hsp92I GRCGYC 1 cut(s) 649
Hsp92II CATG 5 cut(s) 13, 485, 538, 596, 962
HspAI GCGC 1 cut(s) 649
KasI GGCGCC 1 cut(s) 648
Kzo9I GATC 4 cut(s) 394, 458, 473, 667
LmnI GCTCC 2 cut(s) 847, 1040
Lsp1109I GCAGC 4 cut(s) 478, 827, 862, 895
LweI GCATC 4 cut(s) 178, 256, 370, 862
MaeI CTAG 5 cut(s) 288, 470, 498, 566, 860
MaeII ACGT 2 cut(s) 211, 630
MaeIII GTNAC 4 cut(s) 389, 445, 521, 808
MalI GATC 4 cut(s) 396, 460, 475, 669
MbiI CCGCTC 1 cut(s) 56
MboI GATC 4 cut(s) 394, 458, 473, 667
MboII GAAGA 6 cut(s) 18, 128, 326, 719, 722, 729
MflI RGATCY 2 cut(s) 473, 667
MluCI AATT 8 cut(s) 189, 312, 399, 557, 638, 970, 993, 1020
Mly113I GGCGCC 1 cut(s) 649
MlyI GAGTC 1 cut(s) 92
MmeI TCCRAC 1 cut(s) 135
MnlI CCTC 6 cut(s) 70, 112, 374, 379, 463, 919
Mph1103I ATGCAT 3 cut(s) 171, 271, 940
MseI TTAA 4 cut(s) 326, 504, 579, 992
MslI CAYNNNNRTG 1 cut(s) 486
MspA1I CMGCKG 1 cut(s) 886
MspI CCGG 1 cut(s) 517
MspR9I CCNGG 1 cut(s) 103
MvaI CCWGG 1 cut(s) 103
MvnI CGCG 1 cut(s) 371
MwoI GCNNNNNNNGC 2 cut(s) 935, 950
NarI GGCGCC 1 cut(s) 649
NdeI CATATG 2 cut(s) 271, 940
NdeII GATC 4 cut(s) 394, 458, 473, 667
NlaIII CATG 5 cut(s) 13, 485, 538, 596, 962
NlaIV GGNNCC 2 cut(s) 650, 1042
NmuCI GTSAC 1 cut(s) 389
NsiI ATGCAT 3 cut(s) 171, 271, 940
NspI RCATGY 2 cut(s) 485, 538
NspV TTCGAA 1 cut(s) 29
PciI ACATGT 1 cut(s) 534
PcsI WCGNNNNNNNCGW 1 cut(s) 403
PfeI GAWTC 1 cut(s) 360
PflFI GACNNNGTC 1 cut(s) 158
PinAI ACCGGT 1 cut(s) 516
PkrI GCNGC 4 cut(s) 493, 817, 852, 885
Ple19I CGATCG 1 cut(s) 397
PleI GAGTC 1 cut(s) 92
PluTI GGCGCC 1 cut(s) 652
PmaCI CACGTG 1 cut(s) 631
PmlI CACGTG 1 cut(s) 631
PpsI GAGTC 1 cut(s) 92
Ppu21I YACGTR 1 cut(s) 631
PscI ACATGT 1 cut(s) 534
PsiI TTATAA 1 cut(s) 318
Psp6I CCWGG 1 cut(s) 101
PspCI CACGTG 1 cut(s) 631
PspGI CCWGG 1 cut(s) 101
PspN4I GGNNCC 2 cut(s) 650, 1042
PsrI GAACNNNNNNTAC 2 cut(s) 506, 538
PsuI RGATCY 2 cut(s) 473, 667
PsyI GACNNNGTC 1 cut(s) 158
PvuI CGATCG 1 cut(s) 397
RsaI GTAC 2 cut(s) 468, 553
RsaNI GTAC 2 cut(s) 467, 552
RseI CAYNNNNRTG 1 cut(s) 486
SaqAI TTAA 4 cut(s) 326, 504, 579, 992
SatI GCNGC 4 cut(s) 492, 816, 851, 884
Sau3AI GATC 4 cut(s) 394, 458, 473, 667
ScaI AGTACT 1 cut(s) 468
SchI GAGTC 1 cut(s) 92
ScrFI CCNGG 1 cut(s) 103
SetI ASST 7 cut(s) 129, 141, 214, 289, 356, 633, 955
SfaNI GCATC 4 cut(s) 178, 256, 370, 862
SfoI GGCGCC 1 cut(s) 650
SfuI TTCGAA 1 cut(s) 29
SmiI ATTTAAAT 1 cut(s) 327
SmiMI CAYNNNNRTG 1 cut(s) 486
SmlI CTYRAG 2 cut(s) 41, 140
SmoI CTYRAG 2 cut(s) 41, 140
SpeI ACTAGT 1 cut(s) 497
Sse9I AATT 8 cut(s) 189, 312, 399, 557, 638, 970, 993, 1020
SsiI CCGC 4 cut(s) 54, 371, 886, 901
SspDI GGCGCC 1 cut(s) 648
SspMI CTAG 5 cut(s) 288, 470, 498, 566, 860
StyD4I CCNGG 1 cut(s) 101
SwaI ATTTAAAT 1 cut(s) 327
TaaI ACNGT 4 cut(s) 221, 589, 808, 1037
TaiI ACGT 2 cut(s) 214, 633
TaqI TCGA 3 cut(s) 29, 223, 397
TasI AATT 8 cut(s) 189, 312, 399, 557, 638, 970, 993, 1020
TatI WGTACW 1 cut(s) 466
TfiI GAWTC 1 cut(s) 360
Tru1I TTAA 4 cut(s) 326, 504, 579, 992
Tru9I TTAA 4 cut(s) 326, 504, 579, 992
TscAI CASTG 1 cut(s) 610
TseFI GTSAC 1 cut(s) 389
TseI GCWGC 4 cut(s) 491, 815, 850, 883
Tsp45I GTSAC 1 cut(s) 389
TspDTI ATGAA 3 cut(s) 227, 297, 720
TspRI CASTG 1 cut(s) 610
Tth111I GACNNNGTC 1 cut(s) 158
XapI RAATTY 2 cut(s) 399, 638
XceI RCATGY 2 cut(s) 485, 538
XcmI CCANNNNNNNNNTGG 1 cut(s) 871
XmiI GTMKAC 1 cut(s) 150
XspI CTAG 5 cut(s) 288, 470, 498, 566, 860
ZrmI AGTACT 1 cut(s) 468
Zsp2I ATGCAT 3 cut(s) 171, 271, 940
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.