Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0000613

Physical Location & Seq

Genomic Coordinates Forward (+)

11323998 .. 11325273

Gene Structure 1276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G010340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGCGTTTGAGAAAACCAATCAAGCTAGAGAAGGGGACAATCACTCTTGCTTTTCCATTCAAGGAAGGCATTATGATTGGGGTTGATTCTAGAATCACGCGGAAACAAACTATAGTTTCAGACAAGAAGCAGAAGTTTTTTGAAATATCATTTAACATATTTTGTACAATGATGGGGAGAGTTCATGTCTGGGAAAACATGGCCCTATATGTGCAGAAAAAGGTAAAGAGCGAAGAGCGTCTTCGCTGTGCACCTGCAACAGTTTCATATGCAGCAGAAAAGGCGCTTGAACATTTAGAGTACGAATTCAGTGACTATGAATATATGGAGGATGAAGAGGAATTAATATTTGGCACTATCATCGCTGGATGGCAAAAAACAACGGGTTTTGAACTTTATAATGTTAACCTGGATGGCAACAGGGCTTGGAAGACAGACCGTAAAAGTTCAACAATACTAGGATCTGGTGCTAAATATGCTCAGGATGTTATGGACCCAGTTAAGAACTTCTACGACATGTCTAGTGAAGATGCTGCCGACTTTGCCCTAAAAGCACTGTTTATGGCAACCTTTTATGATAAGTGGTGTGGAGGGACTCTACATGTTTATCATGTGCATGAAAATGGATATCAAGAGAAACGCAGCCTCGATGCTTTAGAAGTCTACTCGCGGTATTACAACATTTACGACCTTTACACATATGAACCAAAGACGTTTTTCTTGCTGTATTCTACAGATTACCAACCCATTGCTGGCAATGATCTCATAAACCTCGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005839 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0019538 GO:0019774 GO:0032991 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044464 GO:0071704 GO:1901564 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

Proteasome

Protein Analysis

259

Amino Acids

30.16

Weight (kDa)

5.65

Isoelectric Point (pI)

41.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Proteasome	PF00227	10 - 205	1.9e-23	Proteasome subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000613)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13060 AT1G13060 AT1G13060 AT3G26340
fragaria_vesca	FvH4_1g01201 FvH4_4g24020 FvH4_6g30500
malus_domestica	MD10G1030600.v1.1 MD16G1116800.v1.1
prunus_persica	Prupe.1G229300_v2.0.a1 Prupe.1G229300_v2.0.a1 Prupe.1G229300_v2.0.a1
pyrus_communis	pycom10g01980 pycom13g10110
rosa_chinensis	RchiOBHm_Chr4g0430701 RchiOBHm_Chr5g0003071
rosa_laevigata	RLG00000006954 RLG00000031090 RLG00000031094 RLG00000031099 RLG00000031107 RLG00000031108 RLG00000031111 RLG00000031116 RLG00000032188
rosa_multiflora	Rmu_sc0000131.1_g000009 Rmu_sc0000146.1_g000015 Rmu_sc0002209.1_g000027
rosa_roxburghii	Rroxscaffold_1G00061170 Rroxscaffold_1G00061240 Rroxscaffold_1G00061300 Rroxscaffold_1G00072510 Rroxscaffold_1G00072750 Rroxscaffold_1G00072760 Rroxscaffold_5G00372440 Rroxscaffold_6G00429800 Rroxscaffold_6G00429810 Rroxscaffold_6G00429820 Rroxscaffold_6G00429850
rosa_rugosa	Rorug04G0245300 Rorug04G0402100 Rorug04G0402100 Rorug04G0402100 Rorug05G0025600 Rorug05G0026200
rosa_samantha	Rh3BG233200 Rh3DG047000 Rh3DG047300 Rh3DG047400 Rh3DG047800 Rh4AG053100 Rh4AG227500 Rh4BG230300 Rh4BG309300 Rh4CG242400 Rh4DG160600 Rh4DG225800 Rh5AG024300 Rh5AG024400 Rh5AG024700 Rh5AG027100 Rh5AG119900 Rh5BG118400 Rh5CG027100 Rh5CG027300 Rh5CG027700 Rh5CG128900 Rh5DG026900 Rh5DG027000 Rh5DG027700 Rh5DG028000 Rh5DG028500
rosa_wichuraiana	Rw0G010900 Rw3G003590 Rw4G026180 Rw5G002310 Rw5G002480 Rw5G002600 Rw5G010340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	399
AarI	CACCTGC	1 cut(s)	262
Acc36I	ACCTGC	1 cut(s)	262
AccI	GTMKAC	1 cut(s)	663
AccII	CGCG	2 cut(s)	100, 670
AciI	CCGC	2 cut(s)	100, 670
AclWI	GGATC	1 cut(s)	469
AcsI	RAATTY	1 cut(s)	305
AfaI	GTAC	2 cut(s)	166, 302
AfiI	CCNNNNNNNGG	1 cut(s)	752
AflIII	ACRYGT	2 cut(s)	516, 601
AgsI	TTSAA	5 cut(s)	61, 143, 290, 392, 450
AjnI	CCWGG	1 cut(s)	408
AjuI	GAANNNNNNNTTGG	2 cut(s)	333, 365
AluBI	AGCT	1 cut(s)	25
AluI	AGCT	1 cut(s)	25
Alw21I	GWGCWC	1 cut(s)	253
Alw44I	GTGCAC	1 cut(s)	249
AlwI	GGATC	1 cut(s)	469
Ama87I	CYCGRG	1 cut(s)	773
AoxI	GGCC	1 cut(s)	201
ApaLI	GTGCAC	1 cut(s)	249
ApeKI	GCWGC	3 cut(s)	272, 533, 642
ApoI	RAATTY	1 cut(s)	305
AseI	ATTAAT	1 cut(s)	344
AspLEI	GCGC	1 cut(s)	286
AspS9I	GGNCC	2 cut(s)	202, 493
AvaI	CYCGRG	1 cut(s)	773
AvaII	GGWCC	1 cut(s)	493
BaeGI	GKGCMC	1 cut(s)	253
BbsI	GAAGAC	2 cut(s)	233, 437
Bbv12I	GWGCWC	1 cut(s)	253
BbvI	GCAGC	3 cut(s)	284, 520, 654
BccI	CCATC	3 cut(s)	166, 363, 407
BcgI	CGANNNNNNTGC	2 cut(s)	343, 377
BciT130I	CCWGG	1 cut(s)	410
BfaI	CTAG	4 cut(s)	26, 90, 458, 522
BfmI	CTRYAG	2 cut(s)	111, 732
BfoI	RGCGCY	1 cut(s)	287
BfuAI	ACCTGC	1 cut(s)	262
BisI	GCNGC	3 cut(s)	273, 534, 643
BlsI	GCNGC	3 cut(s)	274, 535, 644
Bme1390I	CCNGG	1 cut(s)	410
Bme18I	GGWCC	1 cut(s)	493
BmeT110I	CYCGRG	1 cut(s)	773
BmgT120I	GGNCC	2 cut(s)	202, 493
BmiI	GGNNCC	1 cut(s)	495
BmrFI	CCNGG	1 cut(s)	410
BmrI	ACTGGG	1 cut(s)	491
BmsI	GCATC	2 cut(s)	520, 640
BmuI	ACTGGG	1 cut(s)	491
BpiI	GAAGAC	2 cut(s)	233, 437
Bpu10I	CCTNAGC	1 cut(s)	480
BsaJI	CCNNGG	1 cut(s)	772
Bsc4I	CCNNNNNNNGG	1 cut(s)	752
Bse1I	ACTGG	1 cut(s)	497
Bse3DI	GCAATG	2 cut(s)	747, 763
BseBI	CCWGG	1 cut(s)	410
BseDI	CCNNGG	1 cut(s)	772
BseGI	GGATG	4 cut(s)	337, 374, 418, 490
BseLI	CCNNNNNNNGG	1 cut(s)	752
BseMI	GCAATG	2 cut(s)	747, 763
BseMII	CTCAG	1 cut(s)	494
BseNI	ACTGG	1 cut(s)	497
BseSI	GKGCMC	1 cut(s)	253
BseXI	GCAGC	3 cut(s)	284, 520, 654
BsgI	GTGCAG	1 cut(s)	233
Bsh1236I	CGCG	2 cut(s)	100, 670
BshFI	GGCC	1 cut(s)	203
BsiHKAI	GWGCWC	1 cut(s)	253
BsiHKCI	CYCGRG	1 cut(s)	773
BslFI	GGGAC	2 cut(s)	49, 607
BslI	CCNNNNNNNGG	1 cut(s)	752
BsmFI	GGGAC	2 cut(s)	49, 607
BsnI	GGCC	1 cut(s)	203
BsoBI	CYCGRG	1 cut(s)	773
Bsp1286I	GDGCHC	1 cut(s)	253
Bsp1407I	TGTACA	1 cut(s)	164
Bsp143I	GATC	2 cut(s)	461, 760
BspACI	CCGC	2 cut(s)	100, 670
BspANI	GGCC	1 cut(s)	203
BspCNI	CTCAG	1 cut(s)	493
BspFNI	CGCG	2 cut(s)	100, 670
BspLI	GGNNCC	1 cut(s)	495
BspMI	ACCTGC	1 cut(s)	262
BspPI	GGATC	1 cut(s)	469
BspQI	GCTCTTC	1 cut(s)	228
BsrDI	GCAATG	2 cut(s)	747, 763
BsrGI	TGTACA	1 cut(s)	164
BsrI	ACTGG	1 cut(s)	497
BssECI	CCNNGG	1 cut(s)	772
BssMI	GATC	2 cut(s)	461, 760
Bst2UI	CCWGG	1 cut(s)	410
Bst4CI	ACNGT	3 cut(s)	262, 440, 558
Bst6I	CTCTTC	2 cut(s)	228, 330
BstAUI	TGTACA	1 cut(s)	164
BstC8I	GCNNGC	1 cut(s)	754
BstDEI	CTNAG	1 cut(s)	480
BstF5I	GGATG	4 cut(s)	337, 374, 418, 490
BstFNI	CGCG	2 cut(s)	100, 670
BstH2I	RGCGCY	1 cut(s)	287
BstHHI	GCGC	1 cut(s)	286
BstKTI	GATC	2 cut(s)	464, 763
BstMBI	GATC	2 cut(s)	461, 760
BstMWI	GCNNNNNNNGC	4 cut(s)	281, 476, 542, 551
BstNI	CCWGG	1 cut(s)	410
BstNSI	RCATGY	2 cut(s)	520, 605
BstSCI	CCNGG	1 cut(s)	408
BstSFI	CTRYAG	2 cut(s)	111, 732
BstSLI	GKGCMC	1 cut(s)	253
BstUI	CGCG	2 cut(s)	100, 670
BstV1I	GCAGC	3 cut(s)	284, 520, 654
BstV2I	GAAGAC	2 cut(s)	233, 437
BstX2I	RGATCY	1 cut(s)	461
BstYI	RGATCY	1 cut(s)	461
BsuRI	GGCC	1 cut(s)	203
BtgZI	GCGATG	1 cut(s)	346
BtsCI	GGATG	4 cut(s)	337, 374, 418, 490
BtsIMutI	CAGTG	2 cut(s)	316, 554
BveI	ACCTGC	1 cut(s)	262
Cac8I	GCNNGC	1 cut(s)	754
CfoI	GCGC	1 cut(s)	286
Cfr13I	GGNCC	2 cut(s)	202, 493
CseI	GACGC	1 cut(s)	227
Csp6I	GTAC	2 cut(s)	165, 301
CviAII	CATG	6 cut(s)	185, 199, 517, 602, 611, 617
CviJI	RGCY	4 cut(s)	25, 203, 425, 645
CviKI_1	RGCY	4 cut(s)	25, 203, 425, 645
CviQI	GTAC	2 cut(s)	165, 301
DdeI	CTNAG	1 cut(s)	480
DpnI	GATC	2 cut(s)	463, 762
DpnII	GATC	2 cut(s)	461, 760
Eam1104I	CTCTTC	2 cut(s)	228, 330
EarI	CTCTTC	2 cut(s)	228, 330
Eco32I	GATATC	1 cut(s)	629
Eco47I	GGWCC	1 cut(s)	493
Eco88I	CYCGRG	1 cut(s)	773
EcoRI	GAATTC	1 cut(s)	305
EcoRII	CCWGG	1 cut(s)	408
EcoRV	GATATC	1 cut(s)	629
FaeI	CATG	6 cut(s)	188, 202, 520, 605, 614, 620
FalI	AAGNNNNNCTT	2 cut(s)	225, 257
FaqI	GGGAC	2 cut(s)	49, 607
FatI	CATG	6 cut(s)	184, 198, 516, 601, 610, 616
FauNDI	CATATG	2 cut(s)	268, 700
FblI	GTMKAC	1 cut(s)	663
Fnu4HI	GCNGC	3 cut(s)	273, 534, 643
FokI	GGATG	4 cut(s)	344, 381, 425, 497
Fsp4HI	GCNGC	3 cut(s)	273, 534, 643
FspBI	CTAG	4 cut(s)	26, 90, 458, 522
GlaI	GCGC	1 cut(s)	285
GluI	GCNGC	3 cut(s)	273, 534, 643
HaeII	RGCGCY	1 cut(s)	287
HaeIII	GGCC	1 cut(s)	203
HgaI	GACGC	1 cut(s)	227
HhaI	GCGC	1 cut(s)	286
Hin1II	CATG	6 cut(s)	188, 202, 520, 605, 614, 620
Hin6I	GCGC	1 cut(s)	284
HinP1I	GCGC	1 cut(s)	284
HincII	GTYRAC	1 cut(s)	406
HindII	GTYRAC	1 cut(s)	406
HinfI	GANTC	3 cut(s)	86, 93, 595
HpaI	GTTAAC	1 cut(s)	406
Hpy166II	GTNNAC	3 cut(s)	251, 406, 664
Hpy188I	TCNGA	1 cut(s)	121
Hpy188III	TCNNGA	3 cut(s)	90, 482, 632
Hpy8I	GTNNAC	3 cut(s)	251, 406, 664
HpyAV	CCTTC	2 cut(s)	25, 59
HpyCH4III	ACNGT	3 cut(s)	262, 440, 558
HpyCH4IV	ACGT	1 cut(s)	713
HpyCH4V	TGCA	5 cut(s)	214, 251, 257, 272, 616
HpyF10VI	GCNNNNNNNGC	4 cut(s)	281, 476, 542, 551
HpyF3I	CTNAG	1 cut(s)	480
HpySE526I	ACGT	1 cut(s)	713
Hsp92II	CATG	6 cut(s)	188, 202, 520, 605, 614, 620
HspAI	GCGC	1 cut(s)	284
KspAI	GTTAAC	1 cut(s)	406
Kzo9I	GATC	2 cut(s)	461, 760
LguI	GCTCTTC	1 cut(s)	228
Lsp1109I	GCAGC	3 cut(s)	284, 520, 654
LweI	GCATC	2 cut(s)	520, 640
MaeI	CTAG	4 cut(s)	26, 90, 458, 522
MaeII	ACGT	1 cut(s)	713
MaeIII	GTNAC	1 cut(s)	311
MalI	GATC	2 cut(s)	463, 762
MboI	GATC	2 cut(s)	461, 760
MboII	GAAGA	5 cut(s)	233, 245, 347, 442, 539
MflI	RGATCY	1 cut(s)	461
MhlI	GDGCHC	1 cut(s)	253
MluCI	AATT	2 cut(s)	305, 341
MlyI	GAGTC	1 cut(s)	589
MnlI	CCTC	4 cut(s)	322, 331, 584, 656
MseI	TTAA	4 cut(s)	153, 344, 405, 501
MslI	CAYNNNNRTG	2 cut(s)	615, 621
MspR9I	CCNGG	1 cut(s)	410
MvaI	CCWGG	1 cut(s)	410
MvnI	CGCG	2 cut(s)	100, 670
MwoI	GCNNNNNNNGC	4 cut(s)	281, 476, 542, 551
NdeI	CATATG	2 cut(s)	268, 700
NdeII	GATC	2 cut(s)	461, 760
NlaIII	CATG	6 cut(s)	188, 202, 520, 605, 614, 620
NlaIV	GGNNCC	1 cut(s)	495
NmuCI	GTSAC	1 cut(s)	311
NspI	RCATGY	2 cut(s)	520, 605
PaqCI	CACCTGC	1 cut(s)	262
PciI	ACATGT	2 cut(s)	516, 601
PciSI	GCTCTTC	1 cut(s)	228
PfeI	GAWTC	2 cut(s)	86, 93
PkrI	GCNGC	3 cut(s)	274, 535, 644
PleI	GAGTC	1 cut(s)	589
PpsI	GAGTC	1 cut(s)	589
PscI	ACATGT	2 cut(s)	516, 601
PshBI	ATTAAT	1 cut(s)	344
PsiI	TTATAA	1 cut(s)	399
Psp6I	CCWGG	1 cut(s)	408
PspGI	CCWGG	1 cut(s)	408
PspN4I	GGNNCC	1 cut(s)	495
PspPI	GGNCC	2 cut(s)	202, 493
PsuI	RGATCY	1 cut(s)	461
RsaI	GTAC	2 cut(s)	166, 302
RsaNI	GTAC	2 cut(s)	165, 301
RseI	CAYNNNNRTG	2 cut(s)	615, 621
SapI	GCTCTTC	1 cut(s)	228
SaqAI	TTAA	4 cut(s)	153, 344, 405, 501
SatI	GCNGC	3 cut(s)	273, 534, 643
Sau3AI	GATC	2 cut(s)	461, 760
Sau96I	GGNCC	2 cut(s)	202, 493
SchI	GAGTC	1 cut(s)	589
ScrFI	CCNGG	1 cut(s)	410
SduI	GDGCHC	1 cut(s)	253
SetI	ASST	8 cut(s)	27, 225, 256, 411, 572, 693, 716, 774
SfaNI	GCATC	2 cut(s)	520, 640
SfcI	CTRYAG	2 cut(s)	111, 732
SinI	GGWCC	1 cut(s)	493
SmiMI	CAYNNNNRTG	2 cut(s)	615, 621
Sse9I	AATT	2 cut(s)	305, 341
SsiI	CCGC	2 cut(s)	100, 670
SspI	AATATT	1 cut(s)	348
SspMI	CTAG	4 cut(s)	26, 90, 458, 522
StyD4I	CCNGG	1 cut(s)	408
TaaI	ACNGT	3 cut(s)	262, 440, 558
TaiI	ACGT	1 cut(s)	716
TaqI	TCGA	1 cut(s)	648
TasI	AATT	2 cut(s)	305, 341
TatI	WGTACW	1 cut(s)	164
TfiI	GAWTC	2 cut(s)	86, 93
Tru1I	TTAA	4 cut(s)	153, 344, 405, 501
Tru9I	TTAA	4 cut(s)	153, 344, 405, 501
TscAI	CASTG	2 cut(s)	316, 561
TseFI	GTSAC	1 cut(s)	311
TseI	GCWGC	3 cut(s)	272, 533, 642
Tsp45I	GTSAC	1 cut(s)	311
TspDTI	ATGAA	6 cut(s)	173, 255, 333, 348, 633, 717
TspRI	CASTG	2 cut(s)	316, 561
VneI	GTGCAC	1 cut(s)	249
VpaK11BI	GGWCC	1 cut(s)	493
VspI	ATTAAT	1 cut(s)	344
XapI	RAATTY	1 cut(s)	305
XbaI	TCTAGA	1 cut(s)	89
XceI	RCATGY	2 cut(s)	520, 605
XcmI	CCANNNNNNNNNTGG	1 cut(s)	749
XmiI	GTMKAC	1 cut(s)	663
XspI	CTAG	4 cut(s)	26, 90, 458, 522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.