Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000613

Physical Location & Seq

Genomic Coordinates Forward (+)

93781477 .. 93782623

Gene Structure 1147 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00072750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGATGGGAGCACTGGTTTTCGGTTCATCGTTAGGCACGCGTGGGCGGGGCTGTTTCCAAGCGGCGGTGGCAGTGCAGCAGCGTCTGCTCGTTTGGCCGCATCAAGGTGGCTTATCCAAGATGGGTTGTGGGGCTTCAAAATACTCTCTTCGGAAGGATTAGAAAGCAGGAAATTTGAGAATACGTCACTAGCTTTGGACCATAAACTCAAAGGGACGACACTTATTGGTTTTGTTTACCGTGAGGGCATCATAGTTGGAGCTGAATCTAGGGCTTCTAATGAATATGATGAGCTTCTATATCCACTTACAATTCGAGACAACAGACGCAAAATGACTCCAATATCTTCCAACATGATTTACGTAGTACAAGGGGTAGAGGCTGATTGTACACAAATGAGGTTGCATATAAGTGAGAAGTTTCCGGACATGGTAAGGGCACCTATTACCATGCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0002376 GO:0003674 GO:0003824 GO:0004175 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005813 GO:0005815 GO:0005829 GO:0005839 GO:0005856 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010498 GO:0015630 GO:0016579 GO:0016787 GO:0019221 GO:0019222 GO:0019538 GO:0019774 GO:0019882 GO:0019941 GO:0023052 GO:0030154 GO:0030162 GO:0030163 GO:0031974 GO:0031981 GO:0032502 GO:0032991 GO:0034097 GO:0034340 GO:0036211 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043632 GO:0043687 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0045444 GO:0048869 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051246 GO:0051336 GO:0051603 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0060337 GO:0065007 GO:0065009 GO:0070011 GO:0070013 GO:0070646 GO:0070647 GO:0070887 GO:0071310 GO:0071345 GO:0071357 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369 GO:1990111

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

Proteasome

Protein Analysis

152

Amino Acids

16.89

Weight (kDa)

8.82

Isoelectric Point (pI)

39.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000613)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13060 AT1G13060 AT1G13060 AT3G26340
fragaria_vesca	FvH4_1g01201 FvH4_4g24020 FvH4_6g30500
malus_domestica	MD10G1030600.v1.1 MD16G1116800.v1.1
prunus_persica	Prupe.1G229300_v2.0.a1 Prupe.1G229300_v2.0.a1 Prupe.1G229300_v2.0.a1
pyrus_communis	pycom10g01980 pycom13g10110
rosa_chinensis	RchiOBHm_Chr4g0430701 RchiOBHm_Chr5g0003071
rosa_laevigata	RLG00000006954 RLG00000031090 RLG00000031094 RLG00000031099 RLG00000031107 RLG00000031108 RLG00000031111 RLG00000031116 RLG00000032188
rosa_multiflora	Rmu_sc0000131.1_g000009 Rmu_sc0000146.1_g000015 Rmu_sc0002209.1_g000027
rosa_roxburghii	Rroxscaffold_1G00061170 Rroxscaffold_1G00061240 Rroxscaffold_1G00061300 Rroxscaffold_1G00072510 Rroxscaffold_1G00072750 Rroxscaffold_1G00072760 Rroxscaffold_5G00372440 Rroxscaffold_6G00429800 Rroxscaffold_6G00429810 Rroxscaffold_6G00429820 Rroxscaffold_6G00429850
rosa_rugosa	Rorug04G0245300 Rorug04G0402100 Rorug04G0402100 Rorug04G0402100 Rorug05G0025600 Rorug05G0026200
rosa_samantha	Rh3BG233200 Rh3DG047000 Rh3DG047300 Rh3DG047400 Rh3DG047800 Rh4AG053100 Rh4AG227500 Rh4BG230300 Rh4BG309300 Rh4CG242400 Rh4DG160600 Rh4DG225800 Rh5AG024300 Rh5AG024400 Rh5AG024700 Rh5AG027100 Rh5AG119900 Rh5BG118400 Rh5CG027100 Rh5CG027300 Rh5CG027700 Rh5CG128900 Rh5DG026900 Rh5DG027000 Rh5DG027700 Rh5DG028000 Rh5DG028500
rosa_wichuraiana	Rw0G010900 Rw3G003590 Rw4G026180 Rw5G002310 Rw5G002480 Rw5G002600 Rw5G010340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	439
AccII	CGCG	1 cut(s)	41
AccIII	TCCGGA	1 cut(s)	424
AciI	CCGC	4 cut(s)	47, 63, 66, 99
AcoI	YGGCCR	1 cut(s)	96
AcsI	RAATTY	1 cut(s)	173
AfaI	GTAC	2 cut(s)	369, 391
AfiI	CCNNNNNNNGG	2 cut(s)	65, 105
AflIII	ACRYGT	1 cut(s)	39
AgsI	TTSAA	1 cut(s)	139
AluBI	AGCT	3 cut(s)	194, 263, 295
AluI	AGCT	3 cut(s)	194, 263, 295
Alw21I	GWGCWC	1 cut(s)	14
Alw26I	GTCTC	1 cut(s)	312
AlwNI	CAGNNNCTG	1 cut(s)	86
Aor13HI	TCCGGA	1 cut(s)	424
AoxI	GGCC	1 cut(s)	96
ApeKI	GCWGC	2 cut(s)	77, 80
ApoI	RAATTY	1 cut(s)	173
AspS9I	GGNCC	1 cut(s)	199
AvaII	GGWCC	1 cut(s)	199
BaeGI	GKGCMC	1 cut(s)	442
BanI	GGYRCC	1 cut(s)	439
Bbv12I	GWGCWC	1 cut(s)	14
BbvI	GCAGC	2 cut(s)	89, 92
BccI	CCATC	1 cut(s)	116
BcoDI	GTCTC	1 cut(s)	312
BfaI	CTAG	2 cut(s)	191, 270
BisI	GCNGC	4 cut(s)	64, 78, 81, 99
BlsI	GCNGC	4 cut(s)	65, 79, 82, 100
Bme18I	GGWCC	1 cut(s)	199
BmgT120I	GGNCC	1 cut(s)	199
BmiI	GGNNCC	1 cut(s)	441
BmsI	GCATC	2 cut(s)	110, 258
BsaAI	YACGTR	1 cut(s)	364
BsaWI	WCCGGW	1 cut(s)	424
BsaXI	ACNNNNNCTCC	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	2 cut(s)	65, 105
Bse1I	ACTGG	1 cut(s)	19
BseAI	TCCGGA	1 cut(s)	424
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	2 cut(s)	65, 105
BseNI	ACTGG	1 cut(s)	19
BseSI	GKGCMC	1 cut(s)	442
BseXI	GCAGC	2 cut(s)	89, 92
BsgI	GTGCAG	1 cut(s)	96
Bsh1236I	CGCG	1 cut(s)	41
BshFI	GGCC	1 cut(s)	98
BshNI	GGYRCC	1 cut(s)	439
BsiHKAI	GWGCWC	1 cut(s)	14
BsiSI	CCGG	1 cut(s)	425
BslFI	GGGAC	1 cut(s)	229
BslI	CCNNNNNNNGG	2 cut(s)	65, 105
BsmAI	GTCTC	1 cut(s)	312
BsmFI	GGGAC	1 cut(s)	229
BsnI	GGCC	1 cut(s)	98
Bsp1286I	GDGCHC	2 cut(s)	14, 442
Bsp13I	TCCGGA	1 cut(s)	424
Bsp1407I	TGTACA	1 cut(s)	389
BspACI	CCGC	4 cut(s)	47, 63, 66, 99
BspANI	GGCC	1 cut(s)	98
BspEI	TCCGGA	1 cut(s)	424
BspFNI	CGCG	1 cut(s)	41
BspLI	GGNNCC	1 cut(s)	441
BspT107I	GGYRCC	1 cut(s)	439
BsrGI	TGTACA	1 cut(s)	389
BsrI	ACTGG	1 cut(s)	19
Bst4CI	ACNGT	1 cut(s)	242
Bst6I	CTCTTC	1 cut(s)	154
BstAPI	GCANNNNNTGC	1 cut(s)	86
BstAUI	TGTACA	1 cut(s)	389
BstBAI	YACGTR	1 cut(s)	364
BstC8I	GCNNGC	1 cut(s)	39
BstF5I	GGATG	1 cut(s)	10
BstFNI	CGCG	1 cut(s)	41
BstMAI	GTCTC	1 cut(s)	312
BstMWI	GCNNNNNNNGC	3 cut(s)	69, 86, 95
BstSLI	GKGCMC	1 cut(s)	442
BstSNI	TACGTA	1 cut(s)	364
BstUI	CGCG	1 cut(s)	41
BstV1I	GCAGC	2 cut(s)	89, 92
BsuRI	GGCC	1 cut(s)	98
BtsCI	GGATG	1 cut(s)	10
BtsI	GCAGTG	1 cut(s)	79
BtsIMutI	CAGTG	2 cut(s)	12, 79
Cac8I	GCNNGC	1 cut(s)	39
CaiI	CAGNNNCTG	1 cut(s)	86
Cfr13I	GGNCC	1 cut(s)	199
CseI	GACGC	2 cut(s)	72, 336
Csp6I	GTAC	2 cut(s)	368, 390
CviAII	CATG	3 cut(s)	355, 430, 451
CviJI	RGCY	9 cut(s)	52, 98, 112, 135, 194, 263, 275, 295, 383
CviKI_1	RGCY	9 cut(s)	52, 98, 112, 135, 194, 263, 275, 295, 383
CviQI	GTAC	2 cut(s)	368, 390
EaeI	YGGCCR	1 cut(s)	96
Eam1104I	CTCTTC	1 cut(s)	154
EarI	CTCTTC	1 cut(s)	154
Eco105I	TACGTA	1 cut(s)	364
Eco47I	GGWCC	1 cut(s)	199
FaeI	CATG	3 cut(s)	358, 433, 454
FaiI	YATR	9 cut(s)	204, 254, 288, 301, 356, 408, 410, 431, 452
FaqI	GGGAC	1 cut(s)	229
FatI	CATG	3 cut(s)	354, 429, 450
FauI	CCCGC	1 cut(s)	40
Fnu4HI	GCNGC	4 cut(s)	64, 78, 81, 99
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	4 cut(s)	64, 78, 81, 99
FspBI	CTAG	2 cut(s)	191, 270
GluI	GCNGC	4 cut(s)	64, 78, 81, 99
HaeIII	GGCC	1 cut(s)	98
HapII	CCGG	1 cut(s)	425
HgaI	GACGC	2 cut(s)	72, 336
Hin1II	CATG	3 cut(s)	358, 433, 454
HinfI	GANTC	2 cut(s)	266, 337
HpaII	CCGG	1 cut(s)	425
Hpy166II	GTNNAC	2 cut(s)	238, 392
Hpy188I	TCNGA	1 cut(s)	154
Hpy188III	TCNNGA	2 cut(s)	317, 425
Hpy8I	GTNNAC	2 cut(s)	238, 392
HpyAV	CCTTC	1 cut(s)	149
HpyCH4III	ACNGT	1 cut(s)	242
HpyCH4IV	ACGT	2 cut(s)	185, 363
HpyCH4V	TGCA	2 cut(s)	77, 406
HpyF10VI	GCNNNNNNNGC	3 cut(s)	69, 86, 95
HpySE526I	ACGT	2 cut(s)	185, 363
Hsp92II	CATG	3 cut(s)	358, 433, 454
Kpn2I	TCCGGA	1 cut(s)	424
LmnI	GCTCC	2 cut(s)	9, 260
LpnPI	CCDG	2 cut(s)	154, 438
Lsp1109I	GCAGC	2 cut(s)	89, 92
LweI	GCATC	2 cut(s)	110, 258
MaeI	CTAG	2 cut(s)	191, 270
MaeII	ACGT	2 cut(s)	185, 363
MaeIII	GTNAC	1 cut(s)	186
MboII	GAAGA	2 cut(s)	141, 339
MhlI	GDGCHC	2 cut(s)	14, 442
MluCI	AATT	2 cut(s)	173, 312
MluI	ACGCGT	1 cut(s)	39
MlyI	GAGTC	1 cut(s)	331
MmeI	TCCRAC	2 cut(s)	238, 375
MnlI	CCTC	3 cut(s)	238, 373, 393
MroI	TCCGGA	1 cut(s)	424
MslI	CAYNNNNRTG	2 cut(s)	106, 411
MspI	CCGG	1 cut(s)	425
MvnI	CGCG	1 cut(s)	41
MwoI	GCNNNNNNNGC	3 cut(s)	69, 86, 95
NlaIII	CATG	3 cut(s)	358, 433, 454
NlaIV	GGNNCC	1 cut(s)	441
NmuCI	GTSAC	1 cut(s)	186
PfeI	GAWTC	1 cut(s)	266
PkrI	GCNGC	4 cut(s)	65, 79, 82, 100
PleI	GAGTC	1 cut(s)	331
PpsI	GAGTC	1 cut(s)	331
Ppu21I	YACGTR	1 cut(s)	364
PspN4I	GGNNCC	1 cut(s)	441
PspPI	GGNCC	1 cut(s)	199
PstNI	CAGNNNCTG	1 cut(s)	86
RsaI	GTAC	2 cut(s)	369, 391
RsaNI	GTAC	2 cut(s)	368, 390
RseI	CAYNNNNRTG	2 cut(s)	106, 411
SatI	GCNGC	4 cut(s)	64, 78, 81, 99
Sau96I	GGNCC	1 cut(s)	199
SchI	GAGTC	1 cut(s)	331
SduI	GDGCHC	2 cut(s)	14, 442
SetI	ASST	8 cut(s)	110, 188, 196, 265, 297, 366, 404, 445
SfaNI	GCATC	2 cut(s)	110, 258
SinI	GGWCC	1 cut(s)	199
SmiMI	CAYNNNNRTG	2 cut(s)	106, 411
SnaBI	TACGTA	1 cut(s)	364
Sse9I	AATT	2 cut(s)	173, 312
SsiI	CCGC	4 cut(s)	47, 63, 66, 99
SspMI	CTAG	2 cut(s)	191, 270
TaaI	ACNGT	1 cut(s)	242
TaiI	ACGT	2 cut(s)	188, 366
TaqI	TCGA	1 cut(s)	316
TasI	AATT	2 cut(s)	173, 312
TatI	WGTACW	2 cut(s)	367, 389
TauI	GCSGC	2 cut(s)	66, 101
TfiI	GAWTC	1 cut(s)	266
TscAI	CASTG	2 cut(s)	19, 79
TseFI	GTSAC	1 cut(s)	186
TseI	GCWGC	2 cut(s)	77, 80
Tsp45I	GTSAC	1 cut(s)	186
TspDTI	ATGAA	2 cut(s)	16, 297
TspRI	CASTG	2 cut(s)	19, 79
VpaK11BI	GGWCC	1 cut(s)	199
XapI	RAATTY	1 cut(s)	173
XspI	CTAG	2 cut(s)	191, 270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.