Rh4AG053100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000613
Physical Location & Seq
Reverse (-)
11128004 .. 11133339
5336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG053100.1

Sequence Viewer

Length: 696 bp
ATGCATTCGATCGACAAAACCAGCAAAACAGACCCAAGCTCCACTGCAACTCTTCGCTCTTCGCCCTCCCCCAAGCCACCGCAGAACAGATCGATTCATTCGATCCCCAAAACCAGCAAAACAGACCCAAGCGACTGCAGCTCTTCGTTCTTCACCATCCCCCAAGCCATCGCAGCTCCACCGCAGCTCTTCGCTCGTCGCCCTCCCCCAAGCCACCGCAGAACAGATCGATTCATTCGATCCCCAAAACCAGCAAAACAGACCCAGCCACCGAAGCTCTTCGCTCTTCGCTCTTCGCCCTCCCCCAAGCCACCGCAGCTCTTCACCCTCCCCCAAGCCACCGCAGCTCTTCGCTCTTCGTACTCCCCCAAGCCACTGCAGCTCCACCGCAGCTCTTCGGCCTTCTCCTTCCCTCAAGCCACCACAGCTCCACCGCAGATTTTTTTTGTTGAATTGGTTGTTGACAGGAGTTCTTGTTCAGTCCGCTGGATAAAATTTATCAGTGGATCTGTAGACAACAAGAAGGGGGATCTAGAGTTGCAACAGGCGATATACTCAACTACCTTCAGGTTATTTGCGTATCACTTGGAGGCTAATCTGCTCTGTTCTCTATTCTCTTTGATCTATCTTCCACTCGTCATAGAAAATTCAAGCTCAGTTGTAGGCAATGTTTGTTCACTTTGGTTAATTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

231

Amino Acids

25.54

Weight (kDa)

10.16

Isoelectric Point (pI)

84.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 513
AciI CCGC 8 cut(s) 80, 182, 217, 314, 342, 388, 434, 484
AclWI GGATC 4 cut(s) 97, 234, 514, 537
AcsI RAATTY 2 cut(s) 494, 646
AcuI CTGAAG 1 cut(s) 550
AfaI GTAC 1 cut(s) 362
AgsI TTSAA 2 cut(s) 452, 651
AloI GAACNNNNNNTCC 2 cut(s) 460, 492
AlwI GGATC 4 cut(s) 97, 234, 514, 537
AoxI GGCC 1 cut(s) 399
ApeKI GCWGC 7 cut(s) 138, 173, 184, 316, 344, 379, 390
ApoI RAATTY 2 cut(s) 494, 646
Asp700I GAANNNNTTC 1 cut(s) 278
AsuHPI GGTGA 2 cut(s) 145, 316
BbvI GCAGC 7 cut(s) 150, 185, 196, 328, 356, 391, 402
BccI CCATC 2 cut(s) 164, 176
BfaI CTAG 1 cut(s) 533
BfmI CTRYAG 3 cut(s) 136, 377, 510
BisI GCNGC 7 cut(s) 139, 174, 185, 317, 345, 380, 391
BlsI GCNGC 7 cut(s) 140, 175, 186, 318, 346, 381, 392
BpuEI CTTGAG 1 cut(s) 399
Bsa29I ATCGAT 2 cut(s) 92, 229
BsaXI ACNNNNNCTCC 8 cut(s) 23, 53, 366, 396, 412, 442, 460, 490
Bse3DI GCAATG 1 cut(s) 673
BseCI ATCGAT 2 cut(s) 92, 229
BseGI GGATG 1 cut(s) 156
BseMI GCAATG 1 cut(s) 673
BseMII CTCAG 1 cut(s) 669
BseXI GCAGC 7 cut(s) 150, 185, 196, 328, 356, 391, 402
BseYI CCCAGC 1 cut(s) 264
Bsh1285I CGRYCG 1 cut(s) 12
BshFI GGCC 1 cut(s) 401
BshVI ATCGAT 2 cut(s) 92, 229
BsiEI CGRYCG 1 cut(s) 12
BsmI GAATGC 1 cut(s) 4
BsnI GGCC 1 cut(s) 401
Bsp143I GATC 8 cut(s) 9, 89, 102, 226, 239, 506, 529, 621
BspACI CCGC 8 cut(s) 80, 182, 217, 314, 342, 388, 434, 484
BspANI GGCC 1 cut(s) 401
BspCNI CTCAG 1 cut(s) 668
BspDI ATCGAT 2 cut(s) 92, 229
BspMAI CTGCAG 2 cut(s) 140, 381
BspPI GGATC 4 cut(s) 97, 234, 514, 537
BsrDI GCAATG 1 cut(s) 673
BssMI GATC 8 cut(s) 9, 89, 102, 226, 239, 506, 529, 621
BstDEI CTNAG 1 cut(s) 655
BstF5I GGATG 1 cut(s) 156
BstKTI GATC 8 cut(s) 12, 92, 105, 229, 242, 509, 532, 624
BstMBI GATC 8 cut(s) 9, 89, 102, 226, 239, 506, 529, 621
BstMCI CGRYCG 1 cut(s) 12
BstMWI GCNNNNNNNGC 7 cut(s) 138, 173, 274, 316, 344, 379, 425
BstSFI CTRYAG 3 cut(s) 136, 377, 510
BstV1I GCAGC 7 cut(s) 150, 185, 196, 328, 356, 391, 402
BstX2I RGATCY 2 cut(s) 506, 529
BstYI RGATCY 2 cut(s) 506, 529
Bsu15I ATCGAT 2 cut(s) 92, 229
BsuRI GGCC 1 cut(s) 401
BsuTUI ATCGAT 2 cut(s) 92, 229
BtgZI GCGATG 1 cut(s) 154
BtsCI GGATG 1 cut(s) 156
BtsI GCAGTG 2 cut(s) 42, 374
BtsIMutI CAGTG 3 cut(s) 42, 374, 508
ClaI ATCGAT 2 cut(s) 92, 229
Csp6I GTAC 1 cut(s) 361
CviQI GTAC 1 cut(s) 361
DdeI CTNAG 1 cut(s) 655
DpnI GATC 8 cut(s) 11, 91, 104, 228, 241, 508, 531, 623
DpnII GATC 8 cut(s) 9, 89, 102, 226, 239, 506, 529, 621
Eco57I CTGAAG 1 cut(s) 550
EcoT22I ATGCAT 1 cut(s) 6
FaiI YATR 2 cut(s) 553, 641
FblI GTMKAC 1 cut(s) 513
Fnu4HI GCNGC 7 cut(s) 139, 174, 185, 317, 345, 380, 391
FokI GGATG 1 cut(s) 143
Fsp4HI GCNGC 7 cut(s) 139, 174, 185, 317, 345, 380, 391
FspBI CTAG 1 cut(s) 533
GluI GCNGC 7 cut(s) 139, 174, 185, 317, 345, 380, 391
GsaI CCCAGC 1 cut(s) 268
HaeIII GGCC 1 cut(s) 401
HincII GTYRAC 1 cut(s) 463
HindII GTYRAC 1 cut(s) 463
HinfI GANTC 2 cut(s) 94, 231
HphI GGTGA 2 cut(s) 145, 316
Hpy166II GTNNAC 3 cut(s) 463, 514, 677
Hpy188III TCNNGA 1 cut(s) 533
Hpy8I GTNNAC 3 cut(s) 463, 514, 677
Hpy99I CGWCG 1 cut(s) 201
HpyAV CCTTC 4 cut(s) 412, 418, 517, 574
HpyCH4V TGCA 5 cut(s) 4, 47, 138, 379, 541
HpyF10VI GCNNNNNNNGC 7 cut(s) 138, 173, 274, 316, 344, 379, 425
HpyF3I CTNAG 1 cut(s) 655
Kzo9I GATC 8 cut(s) 9, 89, 102, 226, 239, 506, 529, 621
LmnI GCTCC 4 cut(s) 44, 181, 387, 433
LpnPI CCDG 8 cut(s) 34, 127, 264, 278, 451, 472, 530, 553
Lsp1109I GCAGC 7 cut(s) 150, 185, 196, 328, 356, 391, 402
MaeI CTAG 1 cut(s) 533
MalI GATC 8 cut(s) 11, 91, 104, 228, 241, 508, 531, 623
MboI GATC 8 cut(s) 9, 89, 102, 226, 239, 506, 529, 621
MflI RGATCY 2 cut(s) 506, 529
MluCI AATT 4 cut(s) 452, 494, 646, 687
MnlI CCTC 6 cut(s) 76, 213, 310, 338, 423, 583
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 278
MseI TTAA 1 cut(s) 686
MspA1I CMGCKG 1 cut(s) 486
Mva1269I GAATGC 1 cut(s) 4
MwoI GCNNNNNNNGC 7 cut(s) 138, 173, 274, 316, 344, 379, 425
NdeII GATC 8 cut(s) 9, 89, 102, 226, 239, 506, 529, 621
NsiI ATGCAT 1 cut(s) 6
PcsI WCGNNNNNNNCGW 2 cut(s) 98, 235
PctI GAATGC 1 cut(s) 4
PdmI GAANNNNTTC 1 cut(s) 278
PfeI GAWTC 2 cut(s) 94, 231
PkrI GCNGC 7 cut(s) 140, 175, 186, 318, 346, 381, 392
Ple19I CGATCG 1 cut(s) 12
PspFI CCCAGC 1 cut(s) 264
PstI CTGCAG 2 cut(s) 140, 381
PsuI RGATCY 2 cut(s) 506, 529
PvuI CGATCG 1 cut(s) 12
RsaI GTAC 1 cut(s) 362
RsaNI GTAC 1 cut(s) 361
SaqAI TTAA 1 cut(s) 686
SatI GCNGC 7 cut(s) 139, 174, 185, 317, 345, 380, 391
Sau3AI GATC 8 cut(s) 9, 89, 102, 226, 239, 506, 529, 621
SfcI CTRYAG 3 cut(s) 136, 377, 510
SmlI CTYRAG 1 cut(s) 414
SmoI CTYRAG 1 cut(s) 414
Sse9I AATT 4 cut(s) 452, 494, 646, 687
SsiI CCGC 8 cut(s) 80, 182, 217, 314, 342, 388, 434, 484
SspMI CTAG 1 cut(s) 533
TaqI TCGA 6 cut(s) 8, 12, 92, 101, 229, 238
TasI AATT 4 cut(s) 452, 494, 646, 687
TfiI GAWTC 2 cut(s) 94, 231
Tru1I TTAA 1 cut(s) 686
Tru9I TTAA 1 cut(s) 686
TscAI CASTG 3 cut(s) 49, 381, 508
TseI GCWGC 7 cut(s) 138, 173, 184, 316, 344, 379, 390
TspDTI ATGAA 2 cut(s) 86, 223
TspRI CASTG 3 cut(s) 49, 381, 508
XapI RAATTY 2 cut(s) 494, 646
XbaI TCTAGA 1 cut(s) 532
XmiI GTMKAC 1 cut(s) 513
XmnI GAANNNNTTC 1 cut(s) 278
XspI CTAG 1 cut(s) 533
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.