Rroxscaffold_6G00429820

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000613
Physical Location & Seq
Forward (+)
50031673 .. 50036112
4440 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00429820.1

Sequence Viewer

Length: 1092 bp
ATGAAGGAAATAGAGGAAGAGGAAGATGAAAGAACTGGAAGAAAACAAAAGAAATGGGACAAGAAACTGATGGAGATTCGGAAAAAAAAACTGAAGGAGATGAGGATGAATAGGGAGAAGAAATTACGAGACGAGAAAGAAAAAATTAAGAAGCTATCTTCCCACATCAACTTATTGTGCACATCTATGGGGCAAATTGATGATTGGGAGAAAATGTACCGTTATGTGTGTCGGAATGGTTTTCAAATTCGTAGTGTTACTCTTCGGGCTACAATATTCTCGAAAGCAACCCTCGATGCAACATTTTTAACACTAGGGTCCGGTGAGGATGAAGCGTACGAAATTTTGAACTCAGCAAACACATATGCGTATATGACTAGAGAACGTGCATATGACTTGGCTTTTCATGCCTTATTTTACGCAACTTTATTGGATAAGTACTCTGGTGGAACTCTAAAAGTGATACATCTGTCTAAGACCACTTCTTCTCTCGAGACCCGCAATGCTTTGCAAGTCTACCCCAAATTTTATAACCTTATGCCTAGAGTTGCAAGTGACGTTCATAGCAGAACATTTTTCGTGCTTTATCCTACGAATTCCTATTCCAAACTTGTGTGGGAAGGTGATGGCCTTGAAGAGCTCATCCTCAGAGTCTGGCCAAAGGGAGATGTAGACGTACAACAGCACCTACAAGCAAGCCATTTTGTAGCAAAGAAGTACGATTTCTACTTTCACCGTTTCGTGTTCAACCAAGTAAACAAGGCTGTACAAGCATACAATACTATCACTACCATAGCTCCTCCCCAACGTCATAACGCTATAGAAGATTATTTCCAAGGTAATTTCATACGTTCTGGCAGCCAAAGGAAGCCCGTATATATTGGATGGAGCTCACAGGACTTGTTGCAACGCATCTGTAACATGAAGGATGCTAAAAAGTCATGGTTCTGCCAATCTGTAATTCGAGAGGCTCCAGAGTCCAGACTTCCAGCATATTACAAACGCATAGACGCGGGGCCTTATCCTTTAGCAGCAGAAACACTTAAAAGTACTCAGTTCCCCTATTCTGATATCAGCTACCTATTAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

363

Amino Acids

42.57

Weight (kDa)

9.36

Isoelectric Point (pI)

46.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 531
AccI GTMKAC 2 cut(s) 516, 672
AccII CGCG 1 cut(s) 1013
AciI CCGC 2 cut(s) 499, 1013
AcoI YGGCCR 1 cut(s) 656
AcsI RAATTY 4 cut(s) 246, 342, 524, 595
AcuI CTGAAG 1 cut(s) 113
AfaI GTAC 7 cut(s) 218, 338, 440, 678, 719, 768, 1051
AgsI TTSAA 4 cut(s) 245, 349, 635, 748
AjuI GAANNNNNNNTTGG 2 cut(s) 945, 977
AluBI AGCT 5 cut(s) 154, 640, 797, 891, 1077
AluI AGCT 5 cut(s) 154, 640, 797, 891, 1077
Alw21I GWGCWC 3 cut(s) 182, 642, 893
Alw26I GTCTC 2 cut(s) 123, 488
Alw44I GTGCAC 1 cut(s) 178
AlwNI CAGNNNCTG 1 cut(s) 654
Ama87I CYCGRG 1 cut(s) 491
AoxI GGCC 3 cut(s) 628, 656, 1016
ApaLI GTGCAC 1 cut(s) 178
ApeKI GCWGC 2 cut(s) 858, 1031
ApoI RAATTY 4 cut(s) 246, 342, 524, 595
AseI ATTAAT 1 cut(s) 1085
AspS9I GGNCC 2 cut(s) 318, 1016
AsuHPI GGTGA 3 cut(s) 335, 635, 725
AvaI CYCGRG 1 cut(s) 491
AvaII GGWCC 1 cut(s) 318
BaeGI GKGCMC 1 cut(s) 182
BaeI ACNNNNGTAYC 2 cut(s) 455, 488
BalI TGGCCA 1 cut(s) 658
BanII GRGCYC 2 cut(s) 642, 893
Bbv12I GWGCWC 3 cut(s) 182, 642, 893
BbvI GCAGC 2 cut(s) 870, 1043
BccI CCATC 3 cut(s) 64, 620, 879
BcoDI GTCTC 2 cut(s) 123, 488
BfaI CTAG 3 cut(s) 314, 378, 543
BfmI CTRYAG 1 cut(s) 819
BisI GCNGC 2 cut(s) 859, 1032
BlsI GCNGC 2 cut(s) 860, 1033
BmcAI AGTACT 2 cut(s) 440, 1051
Bme18I GGWCC 1 cut(s) 318
BmeT110I CYCGRG 1 cut(s) 491
BmgT120I GGNCC 2 cut(s) 318, 1016
BmiI GGNNCC 3 cut(s) 319, 972, 1017
BmsI GCATC 3 cut(s) 286, 919, 921
BpmI CTGGAG 1 cut(s) 957
BsaI GGTCTC 1 cut(s) 488
BsaJI CCNNGG 1 cut(s) 835
BsaWI WCCGGW 1 cut(s) 320
BsaXI ACNNNNNCTCC 4 cut(s) 200, 230, 781, 811
Bse1I ACTGG 1 cut(s) 40
Bse3DI GCAATG 1 cut(s) 508
BseDI CCNNGG 1 cut(s) 835
BseGI GGATG 5 cut(s) 111, 334, 642, 890, 934
BseMI GCAATG 1 cut(s) 508
BseMII CTCAG 3 cut(s) 366, 661, 1067
BseNI ACTGG 1 cut(s) 40
BseRI GAGGAG 1 cut(s) 789
BseSI GKGCMC 1 cut(s) 182
BseXI GCAGC 2 cut(s) 870, 1043
Bsh1236I CGCG 1 cut(s) 1013
BshFI GGCC 3 cut(s) 630, 658, 1018
BsiHKAI GWGCWC 3 cut(s) 182, 642, 893
BsiHKCI CYCGRG 1 cut(s) 491
BsiSI CCGG 1 cut(s) 321
BsiWI CGTACG 1 cut(s) 336
BslFI GGGAC 1 cut(s) 71
BsmAI GTCTC 2 cut(s) 123, 488
BsmBI CGTCTC 1 cut(s) 123
BsmFI GGGAC 1 cut(s) 71
BsnI GGCC 3 cut(s) 630, 658, 1018
Bso31I GGTCTC 1 cut(s) 488
BsoBI CYCGRG 1 cut(s) 491
Bsp1286I GDGCHC 3 cut(s) 182, 642, 893
Bsp1407I TGTACA 1 cut(s) 766
BspACI CCGC 2 cut(s) 499, 1013
BspANI GGCC 3 cut(s) 630, 658, 1018
BspCNI CTCAG 3 cut(s) 365, 660, 1066
BspFNI CGCG 1 cut(s) 1013
BspLI GGNNCC 3 cut(s) 319, 972, 1017
BspQI GCTCTTC 1 cut(s) 630
BspTNI GGTCTC 1 cut(s) 488
BsrDI GCAATG 1 cut(s) 508
BsrGI TGTACA 1 cut(s) 766
BsrI ACTGG 1 cut(s) 40
BssECI CCNNGG 1 cut(s) 835
BssT1I CCWWGG 1 cut(s) 835
Bst4CI ACNGT 2 cut(s) 221, 737
Bst6I CTCTTC 3 cut(s) 12, 267, 630
BstAUI TGTACA 1 cut(s) 766
BstC8I GCNNGC 1 cut(s) 697
BstDEI CTNAG 4 cut(s) 352, 474, 647, 1053
BstF5I GGATG 5 cut(s) 111, 334, 642, 890, 934
BstFNI CGCG 1 cut(s) 1013
BstMAI GTCTC 2 cut(s) 123, 488
BstMWI GCNNNNNNNGC 2 cut(s) 407, 770
BstSFI CTRYAG 1 cut(s) 819
BstSLI GKGCMC 1 cut(s) 182
BstUI CGCG 1 cut(s) 1013
BstV1I GCAGC 2 cut(s) 870, 1043
BsuRI GGCC 3 cut(s) 630, 658, 1018
BtsCI GGATG 5 cut(s) 111, 334, 642, 890, 934
Cac8I GCNNGC 1 cut(s) 697
CaiI CAGNNNCTG 1 cut(s) 654
Cfr13I GGNCC 2 cut(s) 318, 1016
CseI GACGC 1 cut(s) 1019
Csp6I GTAC 7 cut(s) 217, 337, 439, 677, 718, 767, 1050
CviAII CATG 3 cut(s) 407, 922, 942
CviQI GTAC 7 cut(s) 217, 337, 439, 677, 718, 767, 1050
DdeI CTNAG 4 cut(s) 352, 474, 647, 1053
EaeI YGGCCR 1 cut(s) 656
Eam1104I CTCTTC 3 cut(s) 12, 267, 630
EarI CTCTTC 3 cut(s) 12, 267, 630
Ecl136II GAGCTC 2 cut(s) 640, 891
Eco130I CCWWGG 1 cut(s) 835
Eco24I GRGCYC 2 cut(s) 642, 893
Eco31I GGTCTC 1 cut(s) 488
Eco32I GATATC 1 cut(s) 1072
Eco47I GGWCC 1 cut(s) 318
Eco53kI GAGCTC 2 cut(s) 640, 891
Eco57I CTGAAG 1 cut(s) 113
Eco88I CYCGRG 1 cut(s) 491
EcoICRI GAGCTC 2 cut(s) 640, 891
EcoO109I RGGNCCY 1 cut(s) 1016
EcoRI GAATTC 1 cut(s) 595
EcoRV GATATC 1 cut(s) 1072
EcoT14I CCWWGG 1 cut(s) 835
EcoT38I GRGCYC 2 cut(s) 642, 893
ErhI CCWWGG 1 cut(s) 835
Esp3I CGTCTC 1 cut(s) 123
FaeI CATG 3 cut(s) 410, 925, 945
FaqI GGGAC 1 cut(s) 71
FatI CATG 3 cut(s) 406, 921, 941
FauI CCCGC 2 cut(s) 506, 1006
FauNDI CATATG 2 cut(s) 364, 391
FblI GTMKAC 2 cut(s) 516, 672
Fnu4HI GCNGC 2 cut(s) 859, 1032
FokI GGATG 5 cut(s) 118, 341, 629, 897, 941
FriOI GRGCYC 2 cut(s) 642, 893
Fsp4HI GCNGC 2 cut(s) 859, 1032
FspBI CTAG 3 cut(s) 314, 378, 543
GluI GCNGC 2 cut(s) 859, 1032
GsuI CTGGAG 1 cut(s) 957
HaeIII GGCC 3 cut(s) 630, 658, 1018
HapII CCGG 1 cut(s) 321
HgaI GACGC 1 cut(s) 1019
Hin1II CATG 3 cut(s) 410, 925, 945
HinfI GANTC 3 cut(s) 76, 651, 977
HpaII CCGG 1 cut(s) 321
HphI GGTGA 3 cut(s) 335, 635, 725
Hpy166II GTNNAC 4 cut(s) 180, 517, 673, 757
Hpy188I TCNGA 4 cut(s) 81, 234, 650, 1069
Hpy188III TCNNGA 6 cut(s) 280, 491, 493, 965, 974, 981
Hpy8I GTNNAC 4 cut(s) 180, 517, 673, 757
HpyAV CCTTC 3 cut(s) 88, 614, 919
HpyCH4III ACNGT 2 cut(s) 221, 737
HpyCH4IV ACGT 5 cut(s) 385, 558, 675, 808, 850
HpyCH4V TGCA 6 cut(s) 180, 299, 389, 511, 551, 907
HpyF10VI GCNNNNNNNGC 2 cut(s) 407, 770
HpyF3I CTNAG 4 cut(s) 352, 474, 647, 1053
HpySE526I ACGT 5 cut(s) 385, 558, 675, 808, 850
Hsp92II CATG 3 cut(s) 410, 925, 945
LguI GCTCTTC 1 cut(s) 630
LmnI GCTCC 3 cut(s) 802, 888, 976
LpnPI CCDG 9 cut(s) 21, 334, 429, 640, 840, 881, 987, 994, 1002
Lsp1109I GCAGC 2 cut(s) 870, 1043
LweI GCATC 3 cut(s) 286, 919, 921
MaeI CTAG 3 cut(s) 314, 378, 543
MaeII ACGT 5 cut(s) 385, 558, 675, 808, 850
MaeIII GTNAC 3 cut(s) 256, 554, 917
MboII GAAGA 9 cut(s) 29, 35, 51, 130, 150, 254, 477, 647, 836
MhlI GDGCHC 3 cut(s) 182, 642, 893
MlsI TGGCCA 1 cut(s) 658
MluNI TGGCCA 1 cut(s) 658
MlyI GAGTC 2 cut(s) 660, 986
MmeI TCCRAC 1 cut(s) 212
MnlI CCTC 8 cut(s) 7, 13, 96, 302, 319, 656, 810, 961
Mox20I TGGCCA 1 cut(s) 658
MscI TGGCCA 1 cut(s) 658
MseI TTAA 4 cut(s) 147, 308, 1044, 1085
MslI CAYNNNNRTG 1 cut(s) 185
Msp20I TGGCCA 1 cut(s) 658
MspI CCGG 1 cut(s) 321
MvnI CGCG 1 cut(s) 1013
MwoI GCNNNNNNNGC 2 cut(s) 407, 770
NdeI CATATG 2 cut(s) 364, 391
NlaIII CATG 3 cut(s) 410, 925, 945
NlaIV GGNNCC 3 cut(s) 319, 972, 1017
NmuCI GTSAC 1 cut(s) 554
PaeR7I CTCGAG 1 cut(s) 491
PciSI GCTCTTC 1 cut(s) 630
PfeI GAWTC 1 cut(s) 76
Pfl23II CGTACG 1 cut(s) 336
PkrI GCNGC 2 cut(s) 860, 1033
PleI GAGTC 2 cut(s) 659, 985
PpsI GAGTC 2 cut(s) 659, 985
PshBI ATTAAT 1 cut(s) 1085
PsiI TTATAA 1 cut(s) 531
Psp124BI GAGCTC 2 cut(s) 642, 893
PspLI CGTACG 1 cut(s) 336
PspN4I GGNNCC 3 cut(s) 319, 972, 1017
PspPI GGNCC 2 cut(s) 318, 1016
PstNI CAGNNNCTG 1 cut(s) 654
RsaI GTAC 7 cut(s) 218, 338, 440, 678, 719, 768, 1051
RsaNI GTAC 7 cut(s) 217, 337, 439, 677, 718, 767, 1050
RseI CAYNNNNRTG 1 cut(s) 185
SacI GAGCTC 2 cut(s) 642, 893
SapI GCTCTTC 1 cut(s) 630
SaqAI TTAA 4 cut(s) 147, 308, 1044, 1085
SatI GCNGC 2 cut(s) 859, 1032
Sau96I GGNCC 2 cut(s) 318, 1016
ScaI AGTACT 2 cut(s) 440, 1051
SchI GAGTC 2 cut(s) 660, 986
SduI GDGCHC 3 cut(s) 182, 642, 893
SfaNI GCATC 3 cut(s) 286, 919, 921
SfcI CTRYAG 1 cut(s) 819
Sfr274I CTCGAG 1 cut(s) 491
SinI GGWCC 1 cut(s) 318
SlaI CTCGAG 1 cut(s) 491
SmiMI CAYNNNNRTG 1 cut(s) 185
SmlI CTYRAG 1 cut(s) 491
SmoI CTYRAG 1 cut(s) 491
SsiI CCGC 2 cut(s) 499, 1013
SspI AATATT 1 cut(s) 276
SspMI CTAG 3 cut(s) 314, 378, 543
SstI GAGCTC 2 cut(s) 642, 893
StyI CCWWGG 1 cut(s) 835
TaaI ACNGT 2 cut(s) 221, 737
TaiI ACGT 5 cut(s) 388, 561, 678, 811, 853
TaqI TCGA 4 cut(s) 281, 294, 492, 964
TatI WGTACW 3 cut(s) 438, 766, 1049
TfiI GAWTC 1 cut(s) 76
Tru1I TTAA 4 cut(s) 147, 308, 1044, 1085
Tru9I TTAA 4 cut(s) 147, 308, 1044, 1085
TseFI GTSAC 1 cut(s) 554
TseI GCWGC 2 cut(s) 858, 1031
Tsp45I GTSAC 1 cut(s) 554
TspDTI ATGAA 8 cut(s) 17, 42, 122, 345, 395, 551, 835, 938
VneI GTGCAC 1 cut(s) 178
VpaK11BI GGWCC 1 cut(s) 318
VspI ATTAAT 1 cut(s) 1085
XapI RAATTY 4 cut(s) 246, 342, 524, 595
XhoI CTCGAG 1 cut(s) 491
XmiI GTMKAC 2 cut(s) 516, 672
XspI CTAG 3 cut(s) 314, 378, 543
ZrmI AGTACT 2 cut(s) 440, 1051
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.