Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0000613

Physical Location & Seq

Genomic Coordinates Reverse (-)

4018224 .. 4021235

Gene Structure 3012 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1030600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGAAGCTTGACACTAGCGGTCTCGAATCACACGCGCCGCATCTCTTCGGCGAGAGCAGTGGGTTTCTCGACGGCGTTTCCGGTCCTCCGTCTTTCGAGGTTCCCACTACCAATGATTTTGATGGATTTCAGAAGGAAGCTATCCAGATGGTGAAGCCTGCAAAGGGGACAACCACGCTTGCATTCATCTTCAAGGATGGAGTCATGGTTGCTGCCGATTCTCGAGCTTCAATGGGAGGCTATATCTCGTCACAATCTGTGAAGAAGATTATTGAAATCAATCCGTACATGCTCGGTACAATGGCTGGAGGAGCTGCTGACTGCCAGTTTTGGCACAGAAATTTGGGGATTAAGTGTCGGCTTCATGAGTTAGCAAATAAGCGCAGAATTTCTGTTACTGGAGCATCGAAGCTGTTGGCAAATATTTTGTACTCTTACCGCGGAATGGGTCTCTCTGTTGGGACCATGATTGCTGGCTGGGACGAAACAGGTCCTGGACTGTATTATGTTGACAGTGAGGGAGGCCGTTTGAAAGGAATGAGGTTTTCTGTTGGTTCGGGCTCGCCTTACGCTTATGGTGTTCTGGATAATGGGTACCGGTATGACATGTCAGTCGAAGAAGCTGCTGAGTTGGCTAGAAGAGCTATCTATCATGCAACATTCCGTGATGGGGCCAGCGGGGGAGTGGCAAGCGTCTATCACGTGGGGCCAAACGGATGGAAGAAGCTGTCCGGAGACGATGTTGGCGAACTTCACTACCACTATTACCCTGTAGTGGCAGGTTCTGTTGAGCAAGAAATGGTTGAAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005839 GO:0019774 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

Proteasome

Protein Analysis

271

Amino Acids

29.11

Weight (kDa)

6.06

Isoelectric Point (pI)

37.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Proteasome	PF00227	55 - 235	6.4e-53	Proteasome subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000613)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13060 AT1G13060 AT1G13060 AT3G26340
fragaria_vesca	FvH4_1g01201 FvH4_4g24020 FvH4_6g30500
malus_domestica	MD10G1030600.v1.1 MD16G1116800.v1.1
prunus_persica	Prupe.1G229300_v2.0.a1 Prupe.1G229300_v2.0.a1 Prupe.1G229300_v2.0.a1
pyrus_communis	pycom10g01980 pycom13g10110
rosa_chinensis	RchiOBHm_Chr4g0430701 RchiOBHm_Chr5g0003071
rosa_laevigata	RLG00000006954 RLG00000031090 RLG00000031094 RLG00000031099 RLG00000031107 RLG00000031108 RLG00000031111 RLG00000031116 RLG00000032188
rosa_multiflora	Rmu_sc0000131.1_g000009 Rmu_sc0000146.1_g000015 Rmu_sc0002209.1_g000027
rosa_roxburghii	Rroxscaffold_1G00061170 Rroxscaffold_1G00061240 Rroxscaffold_1G00061300 Rroxscaffold_1G00072510 Rroxscaffold_1G00072750 Rroxscaffold_1G00072760 Rroxscaffold_5G00372440 Rroxscaffold_6G00429800 Rroxscaffold_6G00429810 Rroxscaffold_6G00429820 Rroxscaffold_6G00429850
rosa_rugosa	Rorug04G0245300 Rorug04G0402100 Rorug04G0402100 Rorug04G0402100 Rorug05G0025600 Rorug05G0026200
rosa_samantha	Rh3BG233200 Rh3DG047000 Rh3DG047300 Rh3DG047400 Rh3DG047800 Rh4AG053100 Rh4AG227500 Rh4BG230300 Rh4BG309300 Rh4CG242400 Rh4DG160600 Rh4DG225800 Rh5AG024300 Rh5AG024400 Rh5AG024700 Rh5AG027100 Rh5AG119900 Rh5BG118400 Rh5CG027100 Rh5CG027300 Rh5CG027700 Rh5CG128900 Rh5DG026900 Rh5DG027000 Rh5DG027700 Rh5DG028000 Rh5DG028500
rosa_wichuraiana	Rw0G010900 Rw3G003590 Rw4G026180 Rw5G002310 Rw5G002480 Rw5G002600 Rw5G010340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	611
Acc36I	ACCTGC	1 cut(s)	770
Acc65I	GGTACC	1 cut(s)	594
AccB1I	GGYRCC	1 cut(s)	594
AccII	CGCG	2 cut(s)	35, 441
AccIII	TCCGGA	1 cut(s)	731
AciI	CCGC	5 cut(s)	18, 38, 439, 441, 678
AcsI	RAATTY	2 cut(s)	340, 387
AcvI	CACGTG	1 cut(s)	703
AfaI	GTAC	4 cut(s)	287, 298, 431, 596
AfiI	CCNNNNNNNGG	4 cut(s)	164, 445, 670, 775
AflIII	ACRYGT	1 cut(s)	606
AgeI	ACCGGT	1 cut(s)	597
AgsI	TTSAA	5 cut(s)	193, 231, 275, 532, 806
AjnI	CCWGG	1 cut(s)	493
AluBI	AGCT	8 cut(s)	7, 140, 227, 314, 412, 623, 644, 727
AluI	AGCT	8 cut(s)	7, 140, 227, 314, 412, 623, 644, 727
Alw26I	GTCTC	3 cut(s)	26, 455, 729
AlwNI	CAGNNNCTG	2 cut(s)	494, 785
Ama87I	CYCGRG	1 cut(s)	222
Aor13HI	TCCGGA	1 cut(s)	731
AoxI	GGCC	3 cut(s)	523, 672, 707
ApeKI	GCWGC	3 cut(s)	212, 314, 623
ApoI	RAATTY	2 cut(s)	340, 387
AsiGI	ACCGGT	1 cut(s)	597
Asp718I	GGTACC	1 cut(s)	594
AspLEI	GCGC	2 cut(s)	37, 384
AspS9I	GGNCC	5 cut(s)	83, 462, 491, 672, 707
AsuHPI	GGTGA	1 cut(s)	163
AvaI	CYCGRG	1 cut(s)	222
AvaII	GGWCC	3 cut(s)	83, 462, 491
BanI	GGYRCC	1 cut(s)	594
BanII	GRGCYC	1 cut(s)	563
BbrPI	CACGTG	1 cut(s)	703
BbvI	GCAGC	3 cut(s)	199, 301, 610
BccI	CCATC	5 cut(s)	116, 142, 191, 662, 711
BceAI	ACGGC	2 cut(s)	88, 510
BcgI	CGANNNNNNTGC	2 cut(s)	605, 639
BciT130I	CCWGG	1 cut(s)	495
BcoDI	GTCTC	3 cut(s)	26, 455, 729
BfaI	CTAG	2 cut(s)	15, 636
BfmI	CTRYAG	1 cut(s)	771
BfuAI	ACCTGC	1 cut(s)	770
BisI	GCNGC	4 cut(s)	38, 213, 315, 624
BlsI	GCNGC	4 cut(s)	39, 214, 316, 625
Bme1390I	CCNGG	1 cut(s)	495
Bme18I	GGWCC	3 cut(s)	83, 462, 491
BmeT110I	CYCGRG	1 cut(s)	222
BmgT120I	GGNCC	5 cut(s)	83, 462, 491, 672, 707
BmiI	GGNNCC	5 cut(s)	102, 463, 596, 673, 708
BmrFI	CCNGG	1 cut(s)	495
BmsI	GCATC	2 cut(s)	49, 413
BpmI	CTGGAG	2 cut(s)	327, 420
BsaAI	YACGTR	1 cut(s)	703
BsaI	GGTCTC	2 cut(s)	26, 455
BsaJI	CCNNGG	1 cut(s)	439
BsaWI	WCCGGW	3 cut(s)	80, 597, 731
BsaXI	ACNNNNNCTCC	4 cut(s)	192, 222, 726, 756
Bsc4I	CCNNNNNNNGG	4 cut(s)	164, 445, 670, 775
Bse118I	RCCGGY	1 cut(s)	597
Bse1I	ACTGG	2 cut(s)	325, 403
BseAI	TCCGGA	1 cut(s)	731
BseBI	CCWGG	1 cut(s)	495
BseDI	CCNNGG	1 cut(s)	439
BseGI	GGATG	2 cut(s)	202, 722
BseLI	CCNNNNNNNGG	4 cut(s)	164, 445, 670, 775
BseMII	CTCAG	1 cut(s)	618
BseNI	ACTGG	2 cut(s)	325, 403
BseRI	GAGGAG	1 cut(s)	324
BseXI	GCAGC	3 cut(s)	199, 301, 610
BseYI	CCCAGC	1 cut(s)	477
Bsh1236I	CGCG	2 cut(s)	35, 441
BshFI	GGCC	3 cut(s)	525, 674, 709
BshNI	GGYRCC	1 cut(s)	594
BshTI	ACCGGT	1 cut(s)	597
BsiHKCI	CYCGRG	1 cut(s)	222
BsiSI	CCGG	3 cut(s)	81, 598, 732
BslFI	GGGAC	3 cut(s)	181, 475, 494
BslI	CCNNNNNNNGG	4 cut(s)	164, 445, 670, 775
BsmAI	GTCTC	3 cut(s)	26, 455, 729
BsmBI	CGTCTC	1 cut(s)	729
BsmFI	GGGAC	3 cut(s)	181, 475, 494
BsmI	GAATGC	1 cut(s)	182
BsnI	GGCC	3 cut(s)	525, 674, 709
Bso31I	GGTCTC	2 cut(s)	26, 455
BsoBI	CYCGRG	1 cut(s)	222
Bsp1286I	GDGCHC	1 cut(s)	563
Bsp13I	TCCGGA	1 cut(s)	731
BspACI	CCGC	5 cut(s)	18, 38, 439, 441, 678
BspANI	GGCC	3 cut(s)	525, 674, 709
BspCNI	CTCAG	1 cut(s)	619
BspEI	TCCGGA	1 cut(s)	731
BspFNI	CGCG	2 cut(s)	35, 441
BspHI	TCATGA	1 cut(s)	364
BspLI	GGNNCC	5 cut(s)	102, 463, 596, 673, 708
BspMI	ACCTGC	1 cut(s)	770
BspQI	GCTCTTC	1 cut(s)	634
BspT107I	GGYRCC	1 cut(s)	594
BspTNI	GGTCTC	2 cut(s)	26, 455
BsrFI	RCCGGY	1 cut(s)	597
BsrI	ACTGG	2 cut(s)	325, 403
BssAI	RCCGGY	1 cut(s)	597
BssECI	CCNNGG	1 cut(s)	439
Bst2UI	CCWGG	1 cut(s)	495
Bst4CI	ACNGT	2 cut(s)	501, 515
Bst6I	CTCTTC	2 cut(s)	50, 634
BstBAI	YACGTR	1 cut(s)	703
BstC8I	GCNNGC	6 cut(s)	159, 180, 475, 563, 676, 691
BstDEI	CTNAG	1 cut(s)	627
BstDSI	CCRYGG	1 cut(s)	439
BstF5I	GGATG	2 cut(s)	202, 722
BstFNI	CGCG	2 cut(s)	35, 441
BstHHI	GCGC	2 cut(s)	37, 384
BstMAI	GTCTC	3 cut(s)	26, 455, 729
BstMWI	GCNNNNNNNGC	3 cut(s)	311, 632, 641
BstNI	CCWGG	1 cut(s)	495
BstNSI	RCATGY	2 cut(s)	292, 610
BstSCI	CCNGG	1 cut(s)	493
BstSFI	CTRYAG	1 cut(s)	771
BstUI	CGCG	2 cut(s)	35, 441
BstV1I	GCAGC	3 cut(s)	199, 301, 610
BstXI	CCANNNNNNTGG	1 cut(s)	717
BsuRI	GGCC	3 cut(s)	525, 674, 709
BtgI	CCRYGG	1 cut(s)	439
BtsCI	GGATG	2 cut(s)	202, 722
BtsI	GCAGTG	1 cut(s)	64
BtsIMutI	CAGTG	2 cut(s)	64, 520
BveI	ACCTGC	1 cut(s)	770
Cac8I	GCNNGC	6 cut(s)	159, 180, 475, 563, 676, 691
CaiI	CAGNNNCTG	2 cut(s)	494, 785
CciI	TCATGA	1 cut(s)	364
CfoI	GCGC	2 cut(s)	37, 384
Cfr10I	RCCGGY	1 cut(s)	597
Cfr13I	GGNCC	5 cut(s)	83, 462, 491, 672, 707
Cfr42I	CCGCGG	1 cut(s)	442
CseI	GACGC	1 cut(s)	682
Csp6I	GTAC	4 cut(s)	286, 297, 430, 595
CspAI	ACCGGT	1 cut(s)	597
CviAII	CATG	6 cut(s)	205, 289, 365, 466, 607, 653
CviQI	GTAC	4 cut(s)	286, 297, 430, 595
DdeI	CTNAG	1 cut(s)	627
DrdI	GACNNNNNNGTC	1 cut(s)	611
DseDI	GACNNNNNNGTC	1 cut(s)	611
Eam1104I	CTCTTC	2 cut(s)	50, 634
EarI	CTCTTC	2 cut(s)	50, 634
Eco24I	GRGCYC	1 cut(s)	563
Eco31I	GGTCTC	2 cut(s)	26, 455
Eco47I	GGWCC	3 cut(s)	83, 462, 491
Eco72I	CACGTG	1 cut(s)	703
Eco88I	CYCGRG	1 cut(s)	222
EcoO109I	RGGNCCY	1 cut(s)	491
EcoRII	CCWGG	1 cut(s)	493
EcoT38I	GRGCYC	1 cut(s)	563
Esp3I	CGTCTC	1 cut(s)	729
FaeI	CATG	6 cut(s)	208, 292, 368, 469, 610, 656
FaqI	GGGAC	3 cut(s)	181, 475, 494
FatI	CATG	6 cut(s)	204, 288, 364, 465, 606, 652
FauI	CCCGC	1 cut(s)	671
Fnu4HI	GCNGC	4 cut(s)	38, 213, 315, 624
FokI	GGATG	2 cut(s)	209, 729
FriOI	GRGCYC	1 cut(s)	563
Fsp4HI	GCNGC	4 cut(s)	38, 213, 315, 624
FspBI	CTAG	2 cut(s)	15, 636
GlaI	GCGC	2 cut(s)	36, 383
GluI	GCNGC	4 cut(s)	38, 213, 315, 624
GsaI	CCCAGC	1 cut(s)	481
GsuI	CTGGAG	2 cut(s)	327, 420
HaeIII	GGCC	3 cut(s)	525, 674, 709
HapII	CCGG	3 cut(s)	81, 598, 732
HgaI	GACGC	1 cut(s)	682
HhaI	GCGC	2 cut(s)	37, 384
Hin1II	CATG	6 cut(s)	208, 292, 368, 469, 610, 656
Hin6I	GCGC	2 cut(s)	35, 382
HinP1I	GCGC	2 cut(s)	35, 382
HincII	GTYRAC	1 cut(s)	511
HindII	GTYRAC	1 cut(s)	511
HindIII	AAGCTT	1 cut(s)	5
HinfI	GANTC	3 cut(s)	26, 201, 218
HpaII	CCGG	3 cut(s)	81, 598, 732
HphI	GGTGA	1 cut(s)	163
Hpy166II	GTNNAC	1 cut(s)	511
Hpy188I	TCNGA	2 cut(s)	132, 812
Hpy188III	TCNNGA	7 cut(s)	23, 68, 145, 222, 365, 584, 732
Hpy8I	GTNNAC	1 cut(s)	511
Hpy99I	CGWCG	1 cut(s)	74
HpyAV	CCTTC	1 cut(s)	127
HpyCH4III	ACNGT	2 cut(s)	501, 515
HpyCH4IV	ACGT	1 cut(s)	702
HpyCH4V	TGCA	3 cut(s)	161, 182, 656
HpyF10VI	GCNNNNNNNGC	3 cut(s)	311, 632, 641
HpyF3I	CTNAG	1 cut(s)	627
HpySE526I	ACGT	1 cut(s)	702
Hsp92II	CATG	6 cut(s)	208, 292, 368, 469, 610, 656
HspAI	GCGC	2 cut(s)	35, 382
Kpn2I	TCCGGA	1 cut(s)	731
KpnI	GGTACC	1 cut(s)	598
KspI	CCGCGG	1 cut(s)	442
LguI	GCTCTTC	1 cut(s)	634
LmnI	GCTCC	2 cut(s)	311, 401
Lsp1109I	GCAGC	3 cut(s)	199, 301, 610
LweI	GCATC	2 cut(s)	49, 413
MaeI	CTAG	2 cut(s)	15, 636
MaeII	ACGT	1 cut(s)	702
MaeIII	GTNAC	2 cut(s)	249, 394
MboII	GAAGA	7 cut(s)	37, 181, 274, 277, 629, 651, 733
MhlI	GDGCHC	1 cut(s)	563
MluCI	AATT	2 cut(s)	340, 387
MlyI	GAGTC	1 cut(s)	210
MnlI	CCTC	7 cut(s)	91, 96, 230, 302, 511, 515, 534
MroI	TCCGGA	1 cut(s)	731
MseI	TTAA	1 cut(s)	351
MspA1I	CMGCKG	2 cut(s)	441, 678
MspI	CCGG	3 cut(s)	81, 598, 732
MspR9I	CCNGG	1 cut(s)	495
Mva1269I	GAATGC	1 cut(s)	182
MvaI	CCWGG	1 cut(s)	495
MvnI	CGCG	2 cut(s)	35, 441
MwoI	GCNNNNNNNGC	3 cut(s)	311, 632, 641
NlaIII	CATG	6 cut(s)	208, 292, 368, 469, 610, 656
NlaIV	GGNNCC	5 cut(s)	102, 463, 596, 673, 708
NmuCI	GTSAC	1 cut(s)	249
NspI	RCATGY	2 cut(s)	292, 610
PaeR7I	CTCGAG	1 cut(s)	222
PagI	TCATGA	1 cut(s)	364
PciI	ACATGT	1 cut(s)	606
PciSI	GCTCTTC	1 cut(s)	634
PcsI	WCGNNNNNNNCGW	1 cut(s)	744
PctI	GAATGC	1 cut(s)	182
PfeI	GAWTC	2 cut(s)	26, 218
PfoI	TCCNGGA	1 cut(s)	493
PinAI	ACCGGT	1 cut(s)	597
PkrI	GCNGC	4 cut(s)	39, 214, 316, 625
PleI	GAGTC	1 cut(s)	209
PmaCI	CACGTG	1 cut(s)	703
PmlI	CACGTG	1 cut(s)	703
PpsI	GAGTC	1 cut(s)	209
Ppu21I	YACGTR	1 cut(s)	703
PpuMI	RGGWCCY	1 cut(s)	491
PscI	ACATGT	1 cut(s)	606
Psp5II	RGGWCCY	1 cut(s)	491
Psp6I	CCWGG	1 cut(s)	493
PspCI	CACGTG	1 cut(s)	703
PspFI	CCCAGC	1 cut(s)	477
PspGI	CCWGG	1 cut(s)	493
PspN4I	GGNNCC	5 cut(s)	102, 463, 596, 673, 708
PspPI	GGNCC	5 cut(s)	83, 462, 491, 672, 707
PspPPI	RGGWCCY	1 cut(s)	491
PstNI	CAGNNNCTG	2 cut(s)	494, 785
RsaI	GTAC	4 cut(s)	287, 298, 431, 596
RsaNI	GTAC	4 cut(s)	286, 297, 430, 595
SacII	CCGCGG	1 cut(s)	442
SapI	GCTCTTC	1 cut(s)	634
SaqAI	TTAA	1 cut(s)	351
SatI	GCNGC	4 cut(s)	38, 213, 315, 624
Sau96I	GGNCC	5 cut(s)	83, 462, 491, 672, 707
SchI	GAGTC	1 cut(s)	210
ScrFI	CCNGG	1 cut(s)	495
SduI	GDGCHC	1 cut(s)	563
SfaNI	GCATC	2 cut(s)	49, 413
SfcI	CTRYAG	1 cut(s)	771
Sfr274I	CTCGAG	1 cut(s)	222
Sfr303I	CCGCGG	1 cut(s)	442
SgrBI	CCGCGG	1 cut(s)	442
SinI	GGWCC	3 cut(s)	83, 462, 491
SlaI	CTCGAG	1 cut(s)	222
SmlI	CTYRAG	1 cut(s)	222
SmoI	CTYRAG	1 cut(s)	222
Sse9I	AATT	2 cut(s)	340, 387
SsiI	CCGC	5 cut(s)	18, 38, 439, 441, 678
SspI	AATATT	1 cut(s)	424
SspMI	CTAG	2 cut(s)	15, 636
StyD4I	CCNGG	1 cut(s)	493
TaaI	ACNGT	2 cut(s)	501, 515
TaiI	ACGT	1 cut(s)	705
TaqI	TCGA	6 cut(s)	24, 69, 96, 223, 407, 615
TasI	AATT	2 cut(s)	340, 387
TatI	WGTACW	1 cut(s)	429
TauI	GCSGC	1 cut(s)	40
TfiI	GAWTC	2 cut(s)	26, 218
Tru1I	TTAA	1 cut(s)	351
Tru9I	TTAA	1 cut(s)	351
TscAI	CASTG	2 cut(s)	64, 520
TseFI	GTSAC	1 cut(s)	249
TseI	GCWGC	3 cut(s)	212, 314, 623
Tsp45I	GTSAC	1 cut(s)	249
TspDTI	ATGAA	3 cut(s)	17, 175, 353
TspGWI	ACGGA	4 cut(s)	78, 273, 653, 729
TspRI	CASTG	2 cut(s)	64, 520
VpaK11BI	GGWCC	3 cut(s)	83, 462, 491
XapI	RAATTY	2 cut(s)	340, 387
XceI	RCATGY	2 cut(s)	292, 610
XcmI	CCANNNNNNNNNTGG	1 cut(s)	682
XhoI	CTCGAG	1 cut(s)	222
XspI	CTAG	2 cut(s)	15, 636

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.