Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000613

Physical Location & Seq

Genomic Coordinates Reverse (-)

23614656 .. 23615634

Gene Structure 979 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g30500.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGGTTGCGGGGATTCAAAATTCTCTTCAGATTTGGACCAGGAACTCAAGGGGACGACCCTTATCGGTTTTGCTTACAGTGGGGGCATCATACTTGGAGCTGAATCTAGGGCTTCTAATGAACGTGAAGAGCTTCTATATCCGCTTCGAATTCGGGACGACAAAGACAAAGTGGTTCAAATATCTTCTAACATAATATACGTAGTTCAAGGGGACGAGGTTGATTGCGGAAACATGAACGATTCTATGAAACAGAAGTTTCCGTACCAAGGTTATACTACACCTTCAGTTTCATGTGTAGTAGAAACGATGTATAACTATCAGAACAGTCTCGACGAGAAGAAAGGTCCTCAAGTTCACCGTGTTTTTCTGAAAAACAAAAGGGTTGTGAAAGAACGAGCTGGTTTTCCCGCAGCGCTAGGAAGTGGTCAAATTTTTGCTCTTGATGTACTTGAAGGTTACTACTACAATATGACCACTGAAGCTGCTATTGAGTTGGCGTTTAAAGCTTTATTTAGAGCAACCTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0002376 GO:0003674 GO:0003824 GO:0004175 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005813 GO:0005815 GO:0005829 GO:0005839 GO:0005856 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010498 GO:0015630 GO:0016579 GO:0016787 GO:0019221 GO:0019222 GO:0019538 GO:0019774 GO:0019882 GO:0019941 GO:0023052 GO:0030154 GO:0030162 GO:0030163 GO:0031974 GO:0031981 GO:0032502 GO:0032991 GO:0034097 GO:0034340 GO:0036211 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043632 GO:0043687 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0045444 GO:0048869 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051246 GO:0051336 GO:0051603 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0060337 GO:0065007 GO:0065009 GO:0070011 GO:0070013 GO:0070646 GO:0070647 GO:0070887 GO:0071310 GO:0071345 GO:0071357 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369 GO:1990111

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

Proteasome

Protein Analysis

177

Amino Acids

19.66

Weight (kDa)

5.28

Isoelectric Point (pI)

34.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Proteasome	PF00227	17 - 175	2.4e-09	Proteasome subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000613)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13060 AT1G13060 AT1G13060 AT3G26340
fragaria_vesca	FvH4_1g01201 FvH4_4g24020 FvH4_6g30500
malus_domestica	MD10G1030600.v1.1 MD16G1116800.v1.1
prunus_persica	Prupe.1G229300_v2.0.a1 Prupe.1G229300_v2.0.a1 Prupe.1G229300_v2.0.a1
pyrus_communis	pycom10g01980 pycom13g10110
rosa_chinensis	RchiOBHm_Chr4g0430701 RchiOBHm_Chr5g0003071
rosa_laevigata	RLG00000006954 RLG00000031090 RLG00000031094 RLG00000031099 RLG00000031107 RLG00000031108 RLG00000031111 RLG00000031116 RLG00000032188
rosa_multiflora	Rmu_sc0000131.1_g000009 Rmu_sc0000146.1_g000015 Rmu_sc0002209.1_g000027
rosa_roxburghii	Rroxscaffold_1G00061170 Rroxscaffold_1G00061240 Rroxscaffold_1G00061300 Rroxscaffold_1G00072510 Rroxscaffold_1G00072750 Rroxscaffold_1G00072760 Rroxscaffold_5G00372440 Rroxscaffold_6G00429800 Rroxscaffold_6G00429810 Rroxscaffold_6G00429820 Rroxscaffold_6G00429850
rosa_rugosa	Rorug04G0245300 Rorug04G0402100 Rorug04G0402100 Rorug04G0402100 Rorug05G0025600 Rorug05G0026200
rosa_samantha	Rh3BG233200 Rh3DG047000 Rh3DG047300 Rh3DG047400 Rh3DG047800 Rh4AG053100 Rh4AG227500 Rh4BG230300 Rh4BG309300 Rh4CG242400 Rh4DG160600 Rh4DG225800 Rh5AG024300 Rh5AG024400 Rh5AG024700 Rh5AG027100 Rh5AG119900 Rh5BG118400 Rh5CG027100 Rh5CG027300 Rh5CG027700 Rh5CG128900 Rh5DG026900 Rh5DG027000 Rh5DG027700 Rh5DG028000 Rh5DG028500
rosa_wichuraiana	Rw0G010900 Rw3G003590 Rw4G026180 Rw5G002310 Rw5G002480 Rw5G002600 Rw5G010340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	9, 143, 228, 411
AcsI	RAATTY	3 cut(s)	20, 150, 432
AcuI	CTGAAG	3 cut(s)	12, 270, 501
AfaI	GTAC	2 cut(s)	266, 450
AfeI	AGCGCT	1 cut(s)	417
AfiI	CCNNNNNNNGG	1 cut(s)	269
AgsI	TTSAA	4 cut(s)	18, 179, 209, 455
AjnI	CCWGG	1 cut(s)	39
AluBI	AGCT	5 cut(s)	101, 133, 401, 485, 509
AluI	AGCT	5 cut(s)	101, 133, 401, 485, 509
Alw26I	GTCTC	1 cut(s)	335
Aor51HI	AGCGCT	1 cut(s)	417
ApeKI	GCWGC	2 cut(s)	413, 485
ApoI	RAATTY	3 cut(s)	20, 150, 432
Asp700I	GAANNNNTTC	1 cut(s)	132
AspLEI	GCGC	1 cut(s)	418
AspS9I	GGNCC	2 cut(s)	37, 347
AsuHPI	GGTGA	1 cut(s)	350
AsuII	TTCGAA	1 cut(s)	148
AvaII	GGWCC	2 cut(s)	37, 347
BarI	GAAGNNNNNNTAC	2 cut(s)	248, 280
BbvI	GCAGC	2 cut(s)	425, 472
BciT130I	CCWGG	1 cut(s)	41
BcoDI	GTCTC	1 cut(s)	335
BfaI	CTAG	2 cut(s)	108, 419
BfoI	RGCGCY	1 cut(s)	419
BisI	GCNGC	2 cut(s)	414, 486
BlsI	GCNGC	2 cut(s)	415, 487
Bme1390I	CCNGG	1 cut(s)	41
Bme18I	GGWCC	2 cut(s)	37, 347
BmgT120I	GGNCC	2 cut(s)	37, 347
BmrFI	CCNGG	1 cut(s)	41
BmsI	GCATC	1 cut(s)	96
Bpu14I	TTCGAA	1 cut(s)	148
BpuEI	CTTGAG	2 cut(s)	32, 336
BsaAI	YACGTR	1 cut(s)	202
BsaJI	CCNNGG	1 cut(s)	268
Bsc4I	CCNNNNNNNGG	1 cut(s)	269
BseBI	CCWGG	1 cut(s)	41
BseDI	CCNNGG	1 cut(s)	268
BseLI	CCNNNNNNNGG	1 cut(s)	269
BseXI	GCAGC	2 cut(s)	425, 472
BslFI	GGGAC	3 cut(s)	67, 170, 227
BslI	CCNNNNNNNGG	1 cut(s)	269
BsmAI	GTCTC	1 cut(s)	335
BsmFI	GGGAC	3 cut(s)	67, 170, 227
Bsp119I	TTCGAA	1 cut(s)	148
BspACI	CCGC	4 cut(s)	9, 143, 228, 411
BspQI	GCTCTTC	1 cut(s)	123
BspT104I	TTCGAA	1 cut(s)	148
BssECI	CCNNGG	1 cut(s)	268
BssT1I	CCWWGG	1 cut(s)	268
Bst2UI	CCWGG	1 cut(s)	41
Bst4CI	ACNGT	3 cut(s)	80, 329, 362
Bst6I	CTCTTC	2 cut(s)	31, 123
BstBAI	YACGTR	1 cut(s)	202
BstBI	TTCGAA	1 cut(s)	148
BstH2I	RGCGCY	1 cut(s)	419
BstHHI	GCGC	1 cut(s)	418
BstMAI	GTCTC	1 cut(s)	335
BstMWI	GCNNNNNNNGC	1 cut(s)	506
BstNI	CCWGG	1 cut(s)	41
BstSCI	CCNGG	1 cut(s)	39
BstSNI	TACGTA	1 cut(s)	202
BstV1I	GCAGC	2 cut(s)	425, 472
BtsIMutI	CAGTG	2 cut(s)	85, 477
CfoI	GCGC	1 cut(s)	418
Cfr13I	GGNCC	2 cut(s)	37, 347
Csp6I	GTAC	2 cut(s)	265, 449
CviAII	CATG	2 cut(s)	235, 294
CviJI	RGCY	6 cut(s)	101, 113, 133, 401, 485, 509
CviKI_1	RGCY	6 cut(s)	101, 113, 133, 401, 485, 509
CviQI	GTAC	2 cut(s)	265, 449
DraI	TTTAAA	1 cut(s)	505
Eam1104I	CTCTTC	2 cut(s)	31, 123
EarI	CTCTTC	2 cut(s)	31, 123
Eco105I	TACGTA	1 cut(s)	202
Eco130I	CCWWGG	1 cut(s)	268
Eco47I	GGWCC	2 cut(s)	37, 347
Eco47III	AGCGCT	1 cut(s)	417
Eco57I	CTGAAG	3 cut(s)	12, 270, 501
EcoO109I	RGGNCCY	1 cut(s)	347
EcoRI	GAATTC	1 cut(s)	150
EcoRII	CCWGG	1 cut(s)	39
EcoT14I	CCWWGG	1 cut(s)	268
ErhI	CCWWGG	1 cut(s)	268
FaeI	CATG	2 cut(s)	238, 297
FaqI	GGGAC	3 cut(s)	67, 170, 227
FatI	CATG	2 cut(s)	234, 293
FauI	CCCGC	2 cut(s)	2, 418
Fnu4HI	GCNGC	2 cut(s)	414, 486
Fsp4HI	GCNGC	2 cut(s)	414, 486
FspBI	CTAG	2 cut(s)	108, 419
GlaI	GCGC	1 cut(s)	417
GluI	GCNGC	2 cut(s)	414, 486
HaeII	RGCGCY	1 cut(s)	419
HhaI	GCGC	1 cut(s)	418
Hin1II	CATG	2 cut(s)	238, 297
Hin6I	GCGC	1 cut(s)	416
HinP1I	GCGC	1 cut(s)	416
HindIII	AAGCTT	1 cut(s)	507
HinfI	GANTC	3 cut(s)	14, 104, 242
HphI	GGTGA	1 cut(s)	350
Hpy166II	GTNNAC	1 cut(s)	358
Hpy188I	TCNGA	3 cut(s)	31, 324, 372
Hpy188III	TCNNGA	3 cut(s)	155, 332, 443
Hpy8I	GTNNAC	1 cut(s)	358
Hpy99I	CGWCG	1 cut(s)	338
HpyAV	CCTTC	2 cut(s)	294, 449
HpyCH4III	ACNGT	3 cut(s)	80, 329, 362
HpyCH4IV	ACGT	2 cut(s)	124, 201
HpyF10VI	GCNNNNNNNGC	1 cut(s)	506
HpySE526I	ACGT	2 cut(s)	124, 201
Hsp92II	CATG	2 cut(s)	238, 297
HspAI	GCGC	1 cut(s)	416
LguI	GCTCTTC	1 cut(s)	123
LmnI	GCTCC	1 cut(s)	98
LpnPI	CCDG	3 cut(s)	26, 53, 387
Lsp1109I	GCAGC	2 cut(s)	425, 472
LweI	GCATC	1 cut(s)	96
MaeI	CTAG	2 cut(s)	108, 419
MaeII	ACGT	2 cut(s)	124, 201
MaeIII	GTNAC	1 cut(s)	458
MboII	GAAGA	4 cut(s)	18, 140, 177, 352
MluCI	AATT	3 cut(s)	20, 150, 432
MnlI	CCTC	2 cut(s)	211, 360
MroXI	GAANNNNTTC	1 cut(s)	132
MseI	TTAA	1 cut(s)	504
MspR9I	CCNGG	1 cut(s)	41
MvaI	CCWGG	1 cut(s)	41
MwoI	GCNNNNNNNGC	1 cut(s)	506
NlaIII	CATG	2 cut(s)	238, 297
NspV	TTCGAA	1 cut(s)	148
PciSI	GCTCTTC	1 cut(s)	123
PdmI	GAANNNNTTC	1 cut(s)	132
PfeI	GAWTC	3 cut(s)	14, 104, 242
PkrI	GCNGC	2 cut(s)	415, 487
Ppu21I	YACGTR	1 cut(s)	202
PpuMI	RGGWCCY	1 cut(s)	347
Psp5II	RGGWCCY	1 cut(s)	347
Psp6I	CCWGG	1 cut(s)	39
PspGI	CCWGG	1 cut(s)	39
PspPI	GGNCC	2 cut(s)	37, 347
PspPPI	RGGWCCY	1 cut(s)	347
RsaI	GTAC	2 cut(s)	266, 450
RsaNI	GTAC	2 cut(s)	265, 449
SapI	GCTCTTC	1 cut(s)	123
SaqAI	TTAA	1 cut(s)	504
SatI	GCNGC	2 cut(s)	414, 486
Sau96I	GGNCC	2 cut(s)	37, 347
ScrFI	CCNGG	1 cut(s)	41
SfaNI	GCATC	1 cut(s)	96
SfuI	TTCGAA	1 cut(s)	148
SinI	GGWCC	2 cut(s)	37, 347
SmlI	CTYRAG	2 cut(s)	47, 351
SmoI	CTYRAG	2 cut(s)	47, 351
SnaBI	TACGTA	1 cut(s)	202
Sse9I	AATT	3 cut(s)	20, 150, 432
SsiI	CCGC	4 cut(s)	9, 143, 228, 411
SspMI	CTAG	2 cut(s)	108, 419
StyD4I	CCNGG	1 cut(s)	39
StyI	CCWWGG	1 cut(s)	268
TaaI	ACNGT	3 cut(s)	80, 329, 362
TaiI	ACGT	2 cut(s)	127, 204
TaqI	TCGA	2 cut(s)	148, 333
TasI	AATT	3 cut(s)	20, 150, 432
TatI	WGTACW	1 cut(s)	448
TfiI	GAWTC	3 cut(s)	14, 104, 242
Tru1I	TTAA	1 cut(s)	504
Tru9I	TTAA	1 cut(s)	504
TscAI	CASTG	2 cut(s)	85, 484
TseI	GCWGC	2 cut(s)	413, 485
TspDTI	ATGAA	4 cut(s)	135, 251, 263, 282
TspGWI	ACGGA	1 cut(s)	252
TspRI	CASTG	2 cut(s)	85, 484
VpaK11BI	GGWCC	2 cut(s)	37, 347
XapI	RAATTY	3 cut(s)	20, 150, 432
XmnI	GAANNNNTTC	1 cut(s)	132
XspI	CTAG	2 cut(s)	108, 419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.