Rh5AG119900

threonine-type endopeptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000613
Physical Location & Seq
Forward (+)
11118052 .. 11119223
1172 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG119900.1

Sequence Viewer

Length: 780 bp
ATGGAGGATGAAGAGGAATTAATATTTGGCACTATCATCGCTGGATGGCAAAAAACAACGGGTTTTGAACTTTATAATGTTAACCTGGATGGCAACAGGGCTTGGAAGACAGACCGTAAAAGTTCAACAATACTAGGATCTGGTGCTAAATATGCTCAGGATGTTATGGACCCAGTTAAGAACTTCTACGACATGTCTAGTGAAGATGCTGCCGACTTTGCCCTAAAAGCACTGTTTATGGCAACCTTTTATGATAAGTGGTGTGGAGGGACTCTACATGTTTATCATGTGCATGAAAATGGATATCAAGAGAAACGCAGCCTCGATGCTTTAGAAGTCTACTCGCGATATTATAACATTTACGACCTTTACACATATGAACCAAAGACGTTTTTCTTGCTGTATTCTACAGATTACCAACCCATTGCTGGCAATGATCTCATAAACCTCGGATCAGATGAAGGGCTAGTGGCAGCTCATCTTGTAGCAAAGAAGCGAGACTTTAACATCCACCGCCTCGTGTTCAACTCTGAGAATGAGGCTTCAACAGCATACGAAGCTATTGCTAAAGTTGAGCCTAGAGGTGCATCTAGGTTCCCCCGTCTGCAAAATTTTCGTCTTTGTGAATTAAAAATAAAGAGTAAAAGAGTTCCAGTATATGTCCAAAAAAGCTCAAGCGAATTGTTGGAAAGCATATGCGAATTGCCTCCAGCTCCAGAGACCAACCAATGTTGGCTGCCACGCATAATCAGATTGCCTTCATGTTTCGGGTGTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000502 GO:0001775 GO:0002376 GO:0002520 GO:0002521 GO:0003674 GO:0003824 GO:0004175 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005783 GO:0005789 GO:0005829 GO:0005839 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010498 GO:0010499 GO:0012505 GO:0016020 GO:0016043 GO:0016579 GO:0016787 GO:0019221 GO:0019222 GO:0019538 GO:0019774 GO:0019882 GO:0019941 GO:0022607 GO:0023052 GO:0030097 GO:0030098 GO:0030154 GO:0030162 GO:0030163 GO:0030217 GO:0031597 GO:0031974 GO:0031981 GO:0031984 GO:0032501 GO:0032502 GO:0032991 GO:0034097 GO:0034340 GO:0034515 GO:0034622 GO:0036037 GO:0036211 GO:0042110 GO:0042175 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043248 GO:0043374 GO:0043412 GO:0043632 GO:0043687 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044432 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045087 GO:0045321 GO:0045444 GO:0046631 GO:0046632 GO:0046649 GO:0048513 GO:0048534 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051246 GO:0051336 GO:0051603 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0060337 GO:0065003 GO:0065007 GO:0065009 GO:0070011 GO:0070013 GO:0070646 GO:0070647 GO:0070887 GO:0071310 GO:0071345 GO:0071357 GO:0071704 GO:0071840 GO:0080090 GO:0080129 GO:0098827 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369 GO:1990111
KEGG Pathways
Metabolic & Signaling
ko02010 ko03050 ko04145 ko04612 ko05168 ko05340 map02010 map03050 map04145 map04612 map05168 map05340
Pfam Domains
Protein Families
Proteasome

Protein Analysis

259

Amino Acids

29.62

Weight (kDa)

5.48

Isoelectric Point (pI)

46.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Proteasome PF00227 6 - 97 5.8e-09 Proteasome subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 75, 354
AccI GTMKAC 1 cut(s) 339
AccII CGCG 1 cut(s) 346
AciI CCGC 1 cut(s) 514
AclWI GGATC 2 cut(s) 145, 460
AcsI RAATTY 1 cut(s) 610
AfiI CCNNNNNNNGG 1 cut(s) 428
AflIII ACRYGT 2 cut(s) 192, 277
AgsI TTSAA 4 cut(s) 68, 126, 526, 546
AjnI CCWGG 1 cut(s) 84
AjuI GAANNNNNNNTTGG 2 cut(s) 9, 41
AluBI AGCT 4 cut(s) 476, 560, 672, 713
AluI AGCT 4 cut(s) 476, 560, 672, 713
Alw26I GTCTC 2 cut(s) 492, 713
AlwI GGATC 2 cut(s) 145, 460
ApeKI GCWGC 4 cut(s) 209, 318, 473, 736
ApoI RAATTY 1 cut(s) 610
ArsI GACNNNNNNTTYG 2 cut(s) 601, 633
AseI ATTAAT 1 cut(s) 20
AspS9I GGNCC 1 cut(s) 169
AvaII GGWCC 1 cut(s) 169
BauI CACGAG 1 cut(s) 518
BbsI GAAGAC 1 cut(s) 113
BbvI GCAGC 4 cut(s) 196, 330, 485, 723
BccI CCATC 2 cut(s) 39, 83
BcgI CGANNNNNNTGC 6 cut(s) 19, 53, 545, 579, 596, 630
BciT130I CCWGG 1 cut(s) 86
BcoDI GTCTC 2 cut(s) 492, 713
BfaI CTAG 5 cut(s) 134, 198, 467, 579, 591
BfmI CTRYAG 1 cut(s) 408
BisI GCNGC 4 cut(s) 210, 319, 474, 737
BlsI GCNGC 4 cut(s) 211, 320, 475, 738
Bme1390I CCNGG 1 cut(s) 86
Bme18I GGWCC 1 cut(s) 169
BmgT120I GGNCC 1 cut(s) 169
BmiI GGNNCC 2 cut(s) 171, 596
BmrFI CCNGG 1 cut(s) 86
BmrI ACTGGG 1 cut(s) 167
BmsI GCATC 3 cut(s) 196, 316, 596
BmuI ACTGGG 1 cut(s) 167
BpiI GAAGAC 1 cut(s) 113
BpmI CTGGAG 2 cut(s) 693, 699
Bpu10I CCTNAGC 1 cut(s) 156
BpuEI CTTGAG 1 cut(s) 658
BsaI GGTCTC 1 cut(s) 713
BsaJI CCNNGG 1 cut(s) 448
Bsc4I CCNNNNNNNGG 1 cut(s) 428
Bse1I ACTGG 2 cut(s) 173, 653
Bse3DI GCAATG 2 cut(s) 423, 439
BseBI CCWGG 1 cut(s) 86
BseDI CCNNGG 1 cut(s) 448
BseGI GGATG 5 cut(s) 13, 50, 94, 166, 507
BseLI CCNNNNNNNGG 1 cut(s) 428
BseMI GCAATG 2 cut(s) 423, 439
BseMII CTCAG 2 cut(s) 170, 522
BseNI ACTGG 2 cut(s) 173, 653
BseXI GCAGC 4 cut(s) 196, 330, 485, 723
Bsh1236I CGCG 1 cut(s) 346
BslFI GGGAC 1 cut(s) 283
BslI CCNNNNNNNGG 1 cut(s) 428
BsmAI GTCTC 2 cut(s) 492, 713
BsmFI GGGAC 1 cut(s) 283
Bso31I GGTCTC 1 cut(s) 713
Bsp143I GATC 3 cut(s) 137, 436, 452
Bsp68I TCGCGA 1 cut(s) 346
BspACI CCGC 1 cut(s) 514
BspCNI CTCAG 2 cut(s) 169, 523
BspFNI CGCG 1 cut(s) 346
BspLI GGNNCC 2 cut(s) 171, 596
BspPI GGATC 2 cut(s) 145, 460
BspTNI GGTCTC 1 cut(s) 713
BsrDI GCAATG 2 cut(s) 423, 439
BsrI ACTGG 2 cut(s) 173, 653
BssECI CCNNGG 1 cut(s) 448
BssMI GATC 3 cut(s) 137, 436, 452
BssSI CACGAG 1 cut(s) 518
Bst2BI CACGAG 1 cut(s) 518
Bst2UI CCWGG 1 cut(s) 86
Bst4CI ACNGT 2 cut(s) 116, 234
Bst6I CTCTTC 1 cut(s) 6
BstC8I GCNNGC 1 cut(s) 430
BstDEI CTNAG 2 cut(s) 156, 531
BstF5I GGATG 5 cut(s) 13, 50, 94, 166, 507
BstFNI CGCG 1 cut(s) 346
BstKTI GATC 3 cut(s) 140, 439, 455
BstMAI GTCTC 2 cut(s) 492, 713
BstMBI GATC 3 cut(s) 137, 436, 452
BstMWI GCNNNNNNNGC 5 cut(s) 152, 218, 227, 548, 557
BstNI CCWGG 1 cut(s) 86
BstNSI RCATGY 2 cut(s) 196, 281
BstSCI CCNGG 1 cut(s) 84
BstSFI CTRYAG 1 cut(s) 408
BstUI CGCG 1 cut(s) 346
BstV1I GCAGC 4 cut(s) 196, 330, 485, 723
BstV2I GAAGAC 1 cut(s) 113
BstX2I RGATCY 1 cut(s) 137
BstYI RGATCY 1 cut(s) 137
BtgZI GCGATG 1 cut(s) 22
BtsCI GGATG 5 cut(s) 13, 50, 94, 166, 507
BtsIMutI CAGTG 1 cut(s) 230
BtuMI TCGCGA 1 cut(s) 346
Cac8I GCNNGC 1 cut(s) 430
Cfr13I GGNCC 1 cut(s) 169
CviAII CATG 6 cut(s) 193, 278, 287, 293, 762, 777
DdeI CTNAG 2 cut(s) 156, 531
DpnI GATC 3 cut(s) 139, 438, 454
DpnII GATC 3 cut(s) 137, 436, 452
Eam1104I CTCTTC 1 cut(s) 6
EarI CTCTTC 1 cut(s) 6
Eco31I GGTCTC 1 cut(s) 713
Eco32I GATATC 1 cut(s) 305
Eco47I GGWCC 1 cut(s) 169
EcoRII CCWGG 1 cut(s) 84
EcoRV GATATC 1 cut(s) 305
FaeI CATG 6 cut(s) 196, 281, 290, 296, 765, 780
FalI AAGNNNNNCTT 2 cut(s) 485, 517
FaqI GGGAC 1 cut(s) 283
FatI CATG 6 cut(s) 192, 277, 286, 292, 761, 776
FauNDI CATATG 2 cut(s) 376, 695
FblI GTMKAC 1 cut(s) 339
Fnu4HI GCNGC 4 cut(s) 210, 319, 474, 737
FokI GGATG 5 cut(s) 20, 57, 101, 173, 494
Fsp4HI GCNGC 4 cut(s) 210, 319, 474, 737
FspBI CTAG 5 cut(s) 134, 198, 467, 579, 591
GluI GCNGC 4 cut(s) 210, 319, 474, 737
GsuI CTGGAG 2 cut(s) 693, 699
Hin1II CATG 6 cut(s) 196, 281, 290, 296, 765, 780
HincII GTYRAC 1 cut(s) 82
HindII GTYRAC 1 cut(s) 82
HinfI GANTC 1 cut(s) 271
HpaI GTTAAC 1 cut(s) 82
Hpy166II GTNNAC 2 cut(s) 82, 340
Hpy188I TCNGA 4 cut(s) 452, 457, 532, 752
Hpy188III TCNNGA 4 cut(s) 158, 308, 345, 716
Hpy8I GTNNAC 2 cut(s) 82, 340
HpyAV CCTTC 2 cut(s) 455, 768
HpyCH4III ACNGT 2 cut(s) 116, 234
HpyCH4IV ACGT 1 cut(s) 389
HpyCH4V TGCA 4 cut(s) 292, 587, 607, 776
HpyF10VI GCNNNNNNNGC 5 cut(s) 152, 218, 227, 548, 557
HpyF3I CTNAG 2 cut(s) 156, 531
HpySE526I ACGT 1 cut(s) 389
Hsp92II CATG 6 cut(s) 196, 281, 290, 296, 765, 780
KspAI GTTAAC 1 cut(s) 82
Kzo9I GATC 3 cut(s) 137, 436, 452
LmnI GCTCC 1 cut(s) 718
Lsp1109I GCAGC 4 cut(s) 196, 330, 485, 723
LweI GCATC 3 cut(s) 196, 316, 596
MaeI CTAG 5 cut(s) 134, 198, 467, 579, 591
MaeII ACGT 1 cut(s) 389
MalI GATC 3 cut(s) 139, 438, 454
MboI GATC 3 cut(s) 137, 436, 452
MboII GAAGA 3 cut(s) 23, 118, 215
MflI RGATCY 1 cut(s) 137
MluCI AATT 5 cut(s) 17, 610, 626, 680, 701
MlyI GAGTC 1 cut(s) 265
MmeI TCCRAC 1 cut(s) 666
MnlI CCTC 8 cut(s) 7, 260, 332, 458, 527, 532, 575, 717
MseI TTAA 5 cut(s) 20, 81, 177, 504, 629
MslI CAYNNNNRTG 2 cut(s) 291, 297
MspR9I CCNGG 1 cut(s) 86
MvaI CCWGG 1 cut(s) 86
MvnI CGCG 1 cut(s) 346
MwoI GCNNNNNNNGC 5 cut(s) 152, 218, 227, 548, 557
NdeI CATATG 2 cut(s) 376, 695
NdeII GATC 3 cut(s) 137, 436, 452
NlaIII CATG 6 cut(s) 196, 281, 290, 296, 765, 780
NlaIV GGNNCC 2 cut(s) 171, 596
NruI TCGCGA 1 cut(s) 346
NspI RCATGY 2 cut(s) 196, 281
PciI ACATGT 2 cut(s) 192, 277
PkrI GCNGC 4 cut(s) 211, 320, 475, 738
PleI GAGTC 1 cut(s) 265
PpsI GAGTC 1 cut(s) 265
PscI ACATGT 2 cut(s) 192, 277
PshBI ATTAAT 1 cut(s) 20
PsiI TTATAA 2 cut(s) 75, 354
Psp6I CCWGG 1 cut(s) 84
PspGI CCWGG 1 cut(s) 84
PspN4I GGNNCC 2 cut(s) 171, 596
PspPI GGNCC 1 cut(s) 169
PsuI RGATCY 1 cut(s) 137
RruI TCGCGA 1 cut(s) 346
RseI CAYNNNNRTG 2 cut(s) 291, 297
SaqAI TTAA 5 cut(s) 20, 81, 177, 504, 629
SatI GCNGC 4 cut(s) 210, 319, 474, 737
Sau3AI GATC 3 cut(s) 137, 436, 452
Sau96I GGNCC 1 cut(s) 169
SchI GAGTC 1 cut(s) 265
ScrFI CCNGG 1 cut(s) 86
SfaNI GCATC 3 cut(s) 196, 316, 596
SfcI CTRYAG 1 cut(s) 408
SinI GGWCC 1 cut(s) 169
SmiMI CAYNNNNRTG 2 cut(s) 291, 297
SmlI CTYRAG 1 cut(s) 673
SmoI CTYRAG 1 cut(s) 673
Sse9I AATT 5 cut(s) 17, 610, 626, 680, 701
SsiI CCGC 1 cut(s) 514
SspI AATATT 1 cut(s) 24
SspMI CTAG 5 cut(s) 134, 198, 467, 579, 591
StyD4I CCNGG 1 cut(s) 84
TaaI ACNGT 2 cut(s) 116, 234
TaiI ACGT 1 cut(s) 392
TaqI TCGA 1 cut(s) 324
TasI AATT 5 cut(s) 17, 610, 626, 680, 701
Tru1I TTAA 5 cut(s) 20, 81, 177, 504, 629
Tru9I TTAA 5 cut(s) 20, 81, 177, 504, 629
TscAI CASTG 1 cut(s) 237
TseI GCWGC 4 cut(s) 209, 318, 473, 736
TspDTI ATGAA 5 cut(s) 24, 309, 393, 474, 750
TspRI CASTG 1 cut(s) 237
VpaK11BI GGWCC 1 cut(s) 169
VspI ATTAAT 1 cut(s) 20
XapI RAATTY 1 cut(s) 610
XceI RCATGY 2 cut(s) 196, 281
XcmI CCANNNNNNNNNTGG 1 cut(s) 425
XmiI GTMKAC 1 cut(s) 339
XspI CTAG 5 cut(s) 134, 198, 467, 579, 591
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.