Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0034402.1

Orthogroup ID

OG0001789

Physical Location & Seq

Genomic Coordinates Reverse (-)

3581 .. 5206

Gene Structure 1626 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0034402.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

atgtacatgggggataatgggtttgttgaagcacttctacactttcttaactcagttgtgcgtgaagcaaatgttttggctcaagaaagtggagctatggctctattcaatcttgctgtgaatattaacaggagcaagctgtctcatgtctctttatgttgtgtaatgggaatgagaaatgcagtcagatggtcctgcggcctgcgggaaggggtaattcctgcattggtgttgatgtccgttaatggaacatcaagaggaaaagagaaagctcagaagctgttaatgctgttttgtgagcagagagacaaaagagaccaatcacctccggaggagaaggtacaactctgcgaacaaaatgacaacaatcccatacccgctccagaatcaaagcctatgcaaatccgtctcaagaagaaagatgggcaaagcttttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0033612 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0070647 GO:0070696 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KAP U-box

Protein Analysis

145

Amino Acids

16.19

Weight (kDa)

8.9

Isoelectric Point (pI)

50.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001789)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24330 AT1G24330 AT1G27910 AT1G67530 AT1G67530 AT1G67530 AT1G67530
fragaria_vesca	FvH4_4g24030 FvH4_4g24030 FvH4_4g24030
malus_domestica	MD16G1116600.v1.1
prunus_persica	Prupe.1G229500_v2.0.a1 Prupe.1G229500_v2.0.a1 Prupe.1G229500_v2.0.a1 Prupe.1G229500_v2.0.a1 Prupe.1G229500_v2.0.a1
pyrus_communis	pycom13g10100 pycom16g09990
rosa_chinensis	RchiOBHm_Chr4g0430741 RchiOBHm_Chr7g0222371 RchiOBHm_Chr7g0222381
rosa_laevigata	RLG00000002065 RLG00000002066 RLG00000006953
rosa_multiflora	Rmu_co8254499.1_g000001 Rmu_sc0008769.1_g000015 Rmu_sc0030350.1_g000001 Rmu_sc0034402.1_g000003
rosa_roxburghii	Rroxscaffold_3G00237030 Rroxscaffold_5G00372450
rosa_rugosa	Rorug04G0245300 Rorug04G0245300 Rorug04G0245400 Rorug04G0245500 Rorug07G0207800
rosa_samantha	Rh4AG301500 Rh4BG309400 Rh4CG326100 Rh4DG306400 Rh7AG350300 Rh7BG340600 Rh7BG340700 Rh7CG367800 Rh7DG346500 Rh7DG346600
rosa_wichuraiana	Rw4G026200 Rw7G029570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	380
AccIII	TCCGGA	1 cut(s)	328
AciI	CCGC	3 cut(s)	198, 205, 378
AfaI	GTAC	2 cut(s)	5, 342
AgsI	TTSAA	2 cut(s)	29, 109
AluBI	AGCT	5 cut(s)	95, 139, 272, 280, 432
AluI	AGCT	5 cut(s)	95, 139, 272, 280, 432
Alw26I	GTCTC	5 cut(s)	147, 154, 300, 309, 413
AlwNI	CAGNNNCTG	1 cut(s)	280
Aor13HI	TCCGGA	1 cut(s)	328
AoxI	GGCC	1 cut(s)	199
Asp700I	GAANNNNTTC	1 cut(s)	33
AspS9I	GGNCC	1 cut(s)	192
AsuHPI	GGTGA	1 cut(s)	315
AvaII	GGWCC	1 cut(s)	192
BarI	GAAGNNNNNNTAC	2 cut(s)	21, 53
BccI	CCATC	2 cut(s)	183, 416
BcoDI	GTCTC	5 cut(s)	147, 154, 300, 309, 413
BisI	GCNGC	1 cut(s)	199
BlsI	GCNGC	1 cut(s)	200
Bme18I	GGWCC	1 cut(s)	192
BmgT120I	GGNCC	1 cut(s)	192
BpmI	CTGGAG	1 cut(s)	366
BpuEI	CTTGAG	2 cut(s)	66, 395
BsaI	GGTCTC	1 cut(s)	309
BsaWI	WCCGGW	1 cut(s)	328
BseAI	TCCGGA	1 cut(s)	328
BseMII	CTCAG	2 cut(s)	66, 287
BseRI	GAGGAG	1 cut(s)	347
BshFI	GGCC	1 cut(s)	201
BsiSI	CCGG	1 cut(s)	329
BsmAI	GTCTC	5 cut(s)	147, 154, 300, 309, 413
BsmBI	CGTCTC	1 cut(s)	413
BsnI	GGCC	1 cut(s)	201
Bso31I	GGTCTC	1 cut(s)	309
Bsp13I	TCCGGA	1 cut(s)	328
Bsp1407I	TGTACA	1 cut(s)	3
BspACI	CCGC	3 cut(s)	198, 205, 378
BspANI	GGCC	1 cut(s)	201
BspCNI	CTCAG	2 cut(s)	65, 286
BspEI	TCCGGA	1 cut(s)	328
BspTNI	GGTCTC	1 cut(s)	309
BsrBI	CCGCTC	1 cut(s)	380
BsrGI	TGTACA	1 cut(s)	3
BstAUI	TGTACA	1 cut(s)	3
BstC8I	GCNNGC	2 cut(s)	137, 203
BstDEI	CTNAG	2 cut(s)	52, 273
BstMAI	GTCTC	5 cut(s)	147, 154, 300, 309, 413
BstMWI	GCNNNNNNNGC	1 cut(s)	286
BsuRI	GGCC	1 cut(s)	201
Cac8I	GCNNGC	2 cut(s)	137, 203
CaiI	CAGNNNCTG	1 cut(s)	280
Cfr13I	GGNCC	1 cut(s)	192
Csp6I	GTAC	2 cut(s)	4, 341
CviAII	CATG	2 cut(s)	7, 146
CviJI	RGCY	9 cut(s)	80, 95, 101, 139, 201, 272, 280, 394, 432
CviKI_1	RGCY	9 cut(s)	80, 95, 101, 139, 201, 272, 280, 394, 432
CviQI	GTAC	2 cut(s)	4, 341
DdeI	CTNAG	2 cut(s)	52, 273
Eco31I	GGTCTC	1 cut(s)	309
Eco47I	GGWCC	1 cut(s)	192
Esp3I	CGTCTC	1 cut(s)	413
FaeI	CATG	2 cut(s)	10, 149
FaiI	YATR	6 cut(s)	8, 98, 147, 157, 374, 398
FatI	CATG	2 cut(s)	6, 145
FauI	CCCGC	2 cut(s)	198, 385
Fnu4HI	GCNGC	1 cut(s)	199
Fsp4HI	GCNGC	1 cut(s)	199
GluI	GCNGC	1 cut(s)	199
GsuI	CTGGAG	1 cut(s)	366
HaeIII	GGCC	1 cut(s)	201
HapII	CCGG	1 cut(s)	329
Hin1II	CATG	2 cut(s)	10, 149
HindIII	AAGCTT	1 cut(s)	430
HinfI	GANTC	1 cut(s)	386
HpaII	CCGG	1 cut(s)	329
HphI	GGTGA	1 cut(s)	315
Hpy188I	TCNGA	2 cut(s)	188, 276
Hpy188III	TCNNGA	5 cut(s)	83, 255, 329, 383, 412
HpyAV	CCTTC	2 cut(s)	203, 331
HpyCH4V	TGCA	3 cut(s)	182, 224, 400
HpyF10VI	GCNNNNNNNGC	1 cut(s)	286
HpyF3I	CTNAG	2 cut(s)	52, 273
Hsp92II	CATG	2 cut(s)	10, 149
Kpn2I	TCCGGA	1 cut(s)	328
LmnI	GCTCC	3 cut(s)	92, 132, 385
LpnPI	CCDG	6 cut(s)	115, 208, 215, 234, 342, 396
MbiI	CCGCTC	1 cut(s)	380
MboII	GAAGA	1 cut(s)	427
MluCI	AATT	1 cut(s)	216
MnlI	CCTC	3 cut(s)	251, 325, 336
MroI	TCCGGA	1 cut(s)	328
MroXI	GAANNNNTTC	1 cut(s)	33
MseI	TTAA	4 cut(s)	48, 126, 243, 284
MspI	CCGG	1 cut(s)	329
MwoI	GCNNNNNNNGC	1 cut(s)	286
NlaIII	CATG	2 cut(s)	10, 149
PdmI	GAANNNNTTC	1 cut(s)	33
PfeI	GAWTC	1 cut(s)	386
PkrI	GCNGC	1 cut(s)	200
PspPI	GGNCC	1 cut(s)	192
PstNI	CAGNNNCTG	1 cut(s)	280
RsaI	GTAC	2 cut(s)	5, 342
RsaNI	GTAC	2 cut(s)	4, 341
SaqAI	TTAA	4 cut(s)	48, 126, 243, 284
SatI	GCNGC	1 cut(s)	199
Sau96I	GGNCC	1 cut(s)	192
SetI	ASST	7 cut(s)	97, 141, 274, 282, 328, 342, 434
SinI	GGWCC	1 cut(s)	192
SmlI	CTYRAG	2 cut(s)	81, 410
SmoI	CTYRAG	2 cut(s)	81, 410
Sse9I	AATT	1 cut(s)	216
SsiI	CCGC	3 cut(s)	198, 205, 378
SspI	AATATT	1 cut(s)	124
TasI	AATT	1 cut(s)	216
TatI	WGTACW	1 cut(s)	3
TauI	GCSGC	1 cut(s)	201
TfiI	GAWTC	1 cut(s)	386
Tru1I	TTAA	4 cut(s)	48, 126, 243, 284
Tru9I	TTAA	4 cut(s)	48, 126, 243, 284
TspGWI	ACGGA	2 cut(s)	229, 395
VpaK11BI	GGWCC	1 cut(s)	192
XmnI	GAANNNNTTC	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.