Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001789

Physical Location & Seq

Genomic Coordinates Reverse (-)

43725401 .. 43725862

Gene Structure 462 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19903

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGTGTGACCCGGTCATCATTGCTTCTGGTCAAACATATGAAAGGATTTGCATTGAAAAGTGGTTTAGCGATGGGCATAGTACCTGCCCAACGACTCAACAAAAGCTGAGTCGTCTTTCTTTAACTCCCAATTACTGTTTGCTTGACCTTAACTATTGGAGGCTGGCATTTTCTGAGTCTGAGTCCGCTAATTCAAAATCTATGGGTAGTGTTGGCTCTTGCAAGTTGAAGGGTGCTAAAGTGGTTCCTATAGAGGAGAGTTGTACAATAGAGGAGGCTGTCGGAAATGAAACAGAAGAGCTATCTCTGGCATCAGAAGAATCTGAGCCTGATGCATGCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0033612 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0070647 GO:0070696 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KAP U-box

Protein Analysis

114

Amino Acids

12.52

Weight (kDa)

4.47

Isoelectric Point (pI)

64.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
U-box	PF04564	1 - 47	2.1e-10	U-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001789)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24330 AT1G24330 AT1G27910 AT1G67530 AT1G67530 AT1G67530 AT1G67530
fragaria_vesca	FvH4_4g24030 FvH4_4g24030 FvH4_4g24030
malus_domestica	MD16G1116600.v1.1
prunus_persica	Prupe.1G229500_v2.0.a1 Prupe.1G229500_v2.0.a1 Prupe.1G229500_v2.0.a1 Prupe.1G229500_v2.0.a1 Prupe.1G229500_v2.0.a1
pyrus_communis	pycom13g10100 pycom16g09990
rosa_chinensis	RchiOBHm_Chr4g0430741 RchiOBHm_Chr7g0222371 RchiOBHm_Chr7g0222381
rosa_laevigata	RLG00000002065 RLG00000002066 RLG00000006953
rosa_multiflora	Rmu_co8254499.1_g000001 Rmu_sc0008769.1_g000015 Rmu_sc0030350.1_g000001 Rmu_sc0034402.1_g000003
rosa_roxburghii	Rroxscaffold_3G00237030 Rroxscaffold_5G00372450
rosa_rugosa	Rorug04G0245300 Rorug04G0245300 Rorug04G0245400 Rorug04G0245500 Rorug07G0207800
rosa_samantha	Rh4AG301500 Rh4BG309400 Rh4CG326100 Rh4DG306400 Rh7AG350300 Rh7BG340600 Rh7BG340700 Rh7CG367800 Rh7DG346500 Rh7DG346600
rosa_wichuraiana	Rw4G026200 Rw7G029570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	92
AciI	CCGC	1 cut(s)	186
AfaI	GTAC	2 cut(s)	82, 265
AgsI	TTSAA	3 cut(s)	56, 195, 229
AluBI	AGCT	2 cut(s)	106, 301
AluI	AGCT	2 cut(s)	106, 301
ArsI	GACNNNNNNTTYG	2 cut(s)	94, 126
AsuC2I	CCSGG	1 cut(s)	11
BccI	CCATC	1 cut(s)	65
BcnI	CCSGG	1 cut(s)	11
BfmI	CTRYAG	1 cut(s)	249
BfuAI	ACCTGC	1 cut(s)	92
Bme1390I	CCNGG	1 cut(s)	11
BmiI	GGNNCC	1 cut(s)	246
BmrFI	CCNGG	1 cut(s)	11
BmsI	GCATC	2 cut(s)	320, 322
BpuMI	CCSGG	1 cut(s)	11
Bse3DI	GCAATG	1 cut(s)	18
BseMI	GCAATG	1 cut(s)	18
BseMII	CTCAG	4 cut(s)	98, 165, 171, 315
BseRI	GAGGAG	2 cut(s)	269, 287
BsiSI	CCGG	1 cut(s)	11
Bsp1407I	TGTACA	1 cut(s)	263
BspACI	CCGC	1 cut(s)	186
BspCNI	CTCAG	4 cut(s)	99, 166, 172, 316
BspLI	GGNNCC	1 cut(s)	246
BspMI	ACCTGC	1 cut(s)	92
BspQI	GCTCTTC	1 cut(s)	291
BsrDI	GCAATG	1 cut(s)	18
BsrGI	TGTACA	1 cut(s)	263
Bst4CI	ACNGT	1 cut(s)	137
Bst6I	CTCTTC	1 cut(s)	291
BstAUI	TGTACA	1 cut(s)	263
BstC8I	GCNNGC	2 cut(s)	165, 337
BstDEI	CTNAG	4 cut(s)	107, 174, 180, 324
BstNSI	RCATGY	1 cut(s)	339
BstSCI	CCNGG	1 cut(s)	9
BstSFI	CTRYAG	1 cut(s)	249
BtgZI	GCGATG	1 cut(s)	84
BveI	ACCTGC	1 cut(s)	92
Cac8I	GCNNGC	2 cut(s)	165, 337
Csp6I	GTAC	2 cut(s)	81, 264
CviAII	CATG	1 cut(s)	336
CviJI	RGCY	6 cut(s)	106, 163, 216, 278, 301, 328
CviKI_1	RGCY	6 cut(s)	106, 163, 216, 278, 301, 328
CviQI	GTAC	2 cut(s)	81, 264
DdeI	CTNAG	4 cut(s)	107, 174, 180, 324
Eam1104I	CTCTTC	1 cut(s)	291
EarI	CTCTTC	1 cut(s)	291
EcoT22I	ATGCAT	1 cut(s)	337
FaeI	CATG	1 cut(s)	339
FaiI	YATR	6 cut(s)	37, 39, 78, 203, 251, 337
FatI	CATG	1 cut(s)	335
FauNDI	CATATG	1 cut(s)	37
HapII	CCGG	1 cut(s)	11
Hin1II	CATG	1 cut(s)	339
HinfI	GANTC	5 cut(s)	94, 109, 176, 182, 320
HpaII	CCGG	1 cut(s)	11
Hpy188I	TCNGA	5 cut(s)	175, 181, 284, 316, 325
HpyAV	CCTTC	1 cut(s)	223
HpyCH4III	ACNGT	1 cut(s)	137
HpyCH4V	TGCA	3 cut(s)	51, 222, 335
HpyF3I	CTNAG	4 cut(s)	107, 174, 180, 324
Hsp92II	CATG	1 cut(s)	339
LguI	GCTCTTC	1 cut(s)	291
LpnPI	CCDG	5 cut(s)	12, 24, 97, 149, 293
LweI	GCATC	2 cut(s)	320, 322
MaeIII	GTNAC	1 cut(s)	5
MboII	GAAGA	2 cut(s)	308, 329
MluCI	AATT	2 cut(s)	130, 190
MlyI	GAGTC	4 cut(s)	88, 118, 185, 191
MmeI	TCCRAC	1 cut(s)	262
MnlI	CCTC	4 cut(s)	153, 247, 265, 268
Mph1103I	ATGCAT	1 cut(s)	337
MseI	TTAA	2 cut(s)	122, 150
MspI	CCGG	1 cut(s)	11
MspR9I	CCNGG	1 cut(s)	11
NciI	CCSGG	1 cut(s)	11
NdeI	CATATG	1 cut(s)	37
NlaIII	CATG	1 cut(s)	339
NlaIV	GGNNCC	1 cut(s)	246
NmuCI	GTSAC	1 cut(s)	5
NsiI	ATGCAT	1 cut(s)	337
NspI	RCATGY	1 cut(s)	339
PaeI	GCATGC	1 cut(s)	339
PciSI	GCTCTTC	1 cut(s)	291
PfeI	GAWTC	1 cut(s)	320
PflFI	GACNNNGTC	1 cut(s)	11
PleI	GAGTC	4 cut(s)	88, 117, 184, 190
PpsI	GAGTC	4 cut(s)	88, 117, 184, 190
PspN4I	GGNNCC	1 cut(s)	246
PsyI	GACNNNGTC	1 cut(s)	11
RsaI	GTAC	2 cut(s)	82, 265
RsaNI	GTAC	2 cut(s)	81, 264
SapI	GCTCTTC	1 cut(s)	291
SaqAI	TTAA	2 cut(s)	122, 150
SchI	GAGTC	4 cut(s)	88, 118, 185, 191
ScrFI	CCNGG	1 cut(s)	11
SetI	ASST	4 cut(s)	86, 108, 150, 303
SfaNI	GCATC	2 cut(s)	320, 322
SfcI	CTRYAG	1 cut(s)	249
SphI	GCATGC	1 cut(s)	339
Sse9I	AATT	2 cut(s)	130, 190
SsiI	CCGC	1 cut(s)	186
StyD4I	CCNGG	1 cut(s)	9
TaaI	ACNGT	1 cut(s)	137
TasI	AATT	2 cut(s)	130, 190
TatI	WGTACW	1 cut(s)	263
TfiI	GAWTC	1 cut(s)	320
Tru1I	TTAA	2 cut(s)	122, 150
Tru9I	TTAA	2 cut(s)	122, 150
TseFI	GTSAC	1 cut(s)	5
Tsp45I	GTSAC	1 cut(s)	5
TspDTI	ATGAA	2 cut(s)	54, 303
Tth111I	GACNNNGTC	1 cut(s)	11
XceI	RCATGY	1 cut(s)	339
Zsp2I	ATGCAT	1 cut(s)	337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.